Search results for the GEO ID: GSE6338 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM146142 | GPL570 |
|
PTCL_BO_001
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146142
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146142/suppl/GSM146142.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146143 | GPL570 |
|
PTCL.BO.05
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146143
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146143/suppl/GSM146143.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146144 | GPL570 |
|
PTCL.BO.06
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146144
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146144/suppl/GSM146144.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146145 | GPL570 |
|
PTCL.BO.08
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146145
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146145/suppl/GSM146145.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146146 | GPL570 |
|
PTCL.BO.09
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146146
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146146/suppl/GSM146146.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146147 | GPL570 |
|
PTCL.BO.04
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146147
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146147/suppl/GSM146147.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146148 | GPL570 |
|
PTCL.BO.03
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146148
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146148/suppl/GSM146148.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146149 | GPL570 |
|
PTCL_AV_029
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146149
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146149/suppl/GSM146149.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146150 | GPL570 |
|
PTCL_026
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146150
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146150/suppl/GSM146150.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146151 | GPL570 |
|
PTCL_AV_019
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146151
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146151/suppl/GSM146151.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146152 | GPL570 |
|
PTCL_AV_020
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146152
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146152/suppl/GSM146152.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146153 | GPL570 |
|
PTCL_021
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146153
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146153/suppl/GSM146153.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146154 | GPL570 |
|
PTCL_AV_022
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146154
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146154/suppl/GSM146154.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146155 | GPL570 |
|
PTCL_AV_023
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146155
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146155/suppl/GSM146155.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146156 | GPL570 |
|
PTCL_025
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146156
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146156/suppl/GSM146156.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146157 | GPL570 |
|
PTCL_028
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146157
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146157/suppl/GSM146157.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146158 | GPL570 |
|
PTCL_027
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146158
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146158/suppl/GSM146158.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146159 | GPL570 |
|
PTCL_AV_024
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146159
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146159/suppl/GSM146159.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146160 | GPL570 |
|
PTCL.BO.10
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146160
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146160/suppl/GSM146160.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146161 | GPL570 |
|
PTCL.BO.11
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146161
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146161/suppl/GSM146161.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146162 | GPL570 |
|
PTCL.BO-12
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146162
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146162/suppl/GSM146162.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146163 | GPL570 |
|
PTCL.BO-13
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146163
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146163/suppl/GSM146163.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146164 | GPL570 |
|
PTCL.PG.14
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146164
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146164/suppl/GSM146164.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146165 | GPL570 |
|
PTCL.PG.15
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146165
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146165/suppl/GSM146165.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146166 | GPL570 |
|
PTCL.PG.16
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146166
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146166/suppl/GSM146166.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146167 | GPL570 |
|
PTCL.PG.17
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146167
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146167/suppl/GSM146167.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146168 | GPL570 |
|
PTCL.BG.18
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146168
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146168/suppl/GSM146168.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146169 | GPL570 |
|
PTCL.BO.02
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146169
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146169/suppl/GSM146169.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146170 | GPL570 |
|
AILD-01
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146170
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146170/suppl/GSM146170.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146171 | GPL570 |
|
AILD-02
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146171
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146171/suppl/GSM146171.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146172 | GPL570 |
|
AILD-03
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146172
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146172/suppl/GSM146172.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146173 | GPL570 |
|
AILD_AV_004
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146173
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146173/suppl/GSM146173.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146174 | GPL570 |
|
AILD_AV_005
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146174
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146174/suppl/GSM146174.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146175 | GPL570 |
|
AILD_006
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146175
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146175/suppl/GSM146175.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146176 | GPL570 |
|
ALCL_AV_003
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146176
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146176/suppl/GSM146176.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146177 | GPL570 |
|
ALCL_AV_004
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146177
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146177/suppl/GSM146177.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146178 | GPL570 |
|
ALCL_AV_005
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146178
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146178/suppl/GSM146178.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146179 | GPL570 |
|
ALCL_006
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146179
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146179/suppl/GSM146179.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146180 | GPL570 |
|
ALCL_AV_001
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146180
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146180/suppl/GSM146180.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146181 | GPL570 |
|
ALCL_AV_002
|
Human subject, Patient
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146181
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146181/suppl/GSM146181.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146182 | GPL570 |
|
TC.CD4-1
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146182
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146182/suppl/GSM146182.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146183 | GPL570 |
|
TC.CD4-2
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146183
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suiteversion 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146183/suppl/GSM146183.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146184 | GPL570 |
|
TC.CD4-3
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146184
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146184/suppl/GSM146184.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146185 | GPL570 |
|
TC.CD4-5
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146185
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146185/suppl/GSM146185.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146186 | GPL570 |
|
TC.CD4-6
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146186
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146186/suppl/GSM146186.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146187 | GPL570 |
|
TC.CD8-1
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146187
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146187/suppl/GSM146187.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146188 | GPL570 |
|
TC.CD8-2
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146188
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146188/suppl/GSM146188.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146189 | GPL570 |
|
TC.CD8-3
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146189
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146189/suppl/GSM146189.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146191 | GPL570 |
|
TC.CD8-5
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146191
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146191/suppl/GSM146191.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146192 | GPL570 |
|
TC.DR+-1
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146192
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146192/suppl/GSM146192.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146193 | GPL570 |
|
TC.DR+-2A
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146193
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146193/suppl/GSM146193.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146194 | GPL570 |
|
TC.DR+-3
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146194
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146194/suppl/GSM146194.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146195 | GPL570 |
|
TC.DR+-4
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146195
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146195/suppl/GSM146195.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146196 | GPL570 |
|
TC.DR+-5
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146196
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146196/suppl/GSM146196.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146197 | GPL570 |
|
TC.DR-1
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146197
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146197/suppl/GSM146197.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146198 | GPL570 |
|
TC.DR-2
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146198
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146198/suppl/GSM146198.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146199 | GPL570 |
|
TC.DR--3
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146199
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146199/suppl/GSM146199.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146200 | GPL570 |
|
TC.DR-6
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146200
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146200/suppl/GSM146200.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
GSM146201 | GPL570 |
|
TC.DR-7
|
Human subject, Control
|
Lymph-node biopsy
|
Gene expression data from PTCL/U patient at diagnosis
|
Sample_geo_accession | GSM146201
| Sample_status | Public on Dec 25 2006
| Sample_submission_date | Nov 17 2006
| Sample_last_update_date | Nov 22 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Frozen samples homogenized on ice in the Trizol solution (GibcoBRL).
| Sample_growth_protocol_ch1 | Frozen samples
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA and hybridized on the HG U133 2.0 plus GeneChip.
| Sample_hyb_protocol | Following fragmentation, 15 mg of fragmented cRNA were hybridized to HG-U133 2.0 plus microarrays (Affymetrix, Inc.). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | pier paolo,,piccaluga
| Sample_contact_email | ppicca@med.unibo.it
| Sample_contact_institute | university of bologna
| Sample_contact_address | via massarenti 9
| Sample_contact_city | bologna
| Sample_contact_zip/postal_code | 40138
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM146nnn/GSM146201/suppl/GSM146201.CEL.gz
| Sample_series_id | GSE6338
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|