Search results for the GEO ID: GSE6377  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM147173 | GPL201 |
|
VAP_patient29_time1
|
VAP_patient29_time1
|
Tissue: Blood
VAP: Day 14
Gender: Male
Age: 27
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147173
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147173/suppl/GSM147173.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147174 | GPL201 |
|
VAP_patient29_time7
|
VAP_patient29_time7
|
Tissue: Blood
VAP: Day 14
Gender: Male
Age: 27
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147174
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147174/suppl/GSM147174.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147175 | GPL201 |
|
VAP_patient29_time9
|
VAP_patient29_time9
|
Tissue: Blood
VAP: Day 14
Gender: Male
Age: 27
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147175
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147175/suppl/GSM147175.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147176 | GPL201 |
|
VAP_patient29_time13
|
VAP_patient29_time13
|
Tissue: Blood
VAP: Day 14
Gender: Male
Age: 27
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147176
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147176/suppl/GSM147176.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147177 | GPL201 |
|
VAP_patient29_time15
|
VAP_patient29_time15
|
Tissue: Blood
VAP: Day 14
Gender: Male
Age: 27
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147177
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147177/suppl/GSM147177.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147178 | GPL201 |
|
VAP_patient29_time17
|
VAP_patient29_time17
|
Tissue: Blood
VAP: Day 14
Gender: Male
Age: 27
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147178
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147178/suppl/GSM147178.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147179 | GPL201 |
|
VAP_patient29_time19
|
VAP_patient29_time19
|
Tissue: Blood
VAP: Day 14
Gender: Male
Age: 27
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147179
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147179/suppl/GSM147179.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147180 | GPL201 |
|
VAP_patient29_time21
|
VAP_patient29_time21
|
Tissue: Blood
VAP: Day 14
Gender: Male
Age: 27
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147180
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147180/suppl/GSM147180.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147181 | GPL201 |
|
VAP_patient22_time1
|
VAP_patient22_time1
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 33
Ethnicity: African American
Infecting Organism: Haemophilus influenzae (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147181
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147181/suppl/GSM147181.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147182 | GPL201 |
|
VAP_patient22_time3
|
VAP_patient22_time3
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 33
Ethnicity: African American
Infecting Organism: Haemophilus influenzae (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147182
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147182/suppl/GSM147182.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147183 | GPL201 |
|
VAP_patient22_time5
|
VAP_patient22_time5
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 33
Ethnicity: African American
Infecting Organism: Haemophilus influenzae (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147183
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147183/suppl/GSM147183.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147184 | GPL201 |
|
VAP_patient22_time7
|
VAP_patient22_time7
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 33
Ethnicity: African American
Infecting Organism: Haemophilus influenzae (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147184
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147184/suppl/GSM147184.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147185 | GPL201 |
|
VAP_patient22_time9
|
VAP_patient22_time9
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 33
Ethnicity: African American
Infecting Organism: Haemophilus influenzae (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147185
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147185/suppl/GSM147185.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147186 | GPL201 |
|
VAP_patient22_time13
|
VAP_patient22_time13
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 33
Ethnicity: African American
Infecting Organism: Haemophilus influenzae (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147186
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147186/suppl/GSM147186.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147187 | GPL201 |
|
VAP_patient22_time17
|
VAP_patient22_time17
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 33
Ethnicity: African American
Infecting Organism: Haemophilus influenzae (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147187
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147187/suppl/GSM147187.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147188 | GPL201 |
|
VAP_patient18_time1
|
VAP_patient18_time1
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 47
Ethnicity: Caucasian
Infecting Organism: Escerischia coli, Haemophilus influenzae and Streptococcus pneumoniae (Mixed Gram Positive and Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147188
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147188/suppl/GSM147188.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147189 | GPL201 |
|
VAP_patient18_time3
|
VAP_patient18_time3
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 47
Ethnicity: Caucasian
Infecting Organism: Escerischia coli, Haemophilus influenzae and Streptococcus pneumoniae (Mixed Gram Positive and Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147189
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147189/suppl/GSM147189.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147190 | GPL201 |
|
VAP_patient18_time5
|
VAP_patient18_time5
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 47
Ethnicity: Caucasian
Infecting Organism: Escerischia coli, Haemophilus influenzae and Streptococcus pneumoniae (Mixed Gram Positive and Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147190
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147190/suppl/GSM147190.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147191 | GPL201 |
|
VAP_patient18_time7
|
VAP_patient18_time7
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 47
Ethnicity: Caucasian
Infecting Organism: Escerischia coli, Haemophilus influenzae and Streptococcus pneumoniae (Mixed Gram Positive and Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147191
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147191/suppl/GSM147191.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147192 | GPL201 |
|
VAP_patient18_time9
|
VAP_patient18_time9
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 47
Ethnicity: Caucasian
Infecting Organism: Escerischia coli, Haemophilus influenzae and Streptococcus pneumoniae (Mixed Gram Positive and Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147192
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147192/suppl/GSM147192.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147193 | GPL201 |
|
VAP_patient18_time11
|
VAP_patient18_time11
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 47
Ethnicity: Caucasian
Infecting Organism: Escerischia coli, Haemophilus influenzae and Streptococcus pneumoniae (Mixed Gram Positive and Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147193
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147193/suppl/GSM147193.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147194 | GPL201 |
|
VAP_patient18_time13
|
VAP_patient18_time13
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 47
Ethnicity: Caucasian
Infecting Organism: Escerischia coli, Haemophilus influenzae and Streptococcus pneumoniae (Mixed Gram Positive and Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147194
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147194/suppl/GSM147194.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147195 | GPL201 |
|
VAP_patient18_time15
|
VAP_patient18_time15
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 47
Ethnicity: Caucasian
Infecting Organism: Escerischia coli, Haemophilus influenzae and Streptococcus pneumoniae (Mixed Gram Positive and Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147195
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147195/suppl/GSM147195.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147196 | GPL201 |
|
VAP_patient18_time17
|
VAP_patient18_time17
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 47
Ethnicity: Caucasian
Infecting Organism: Escerischia coli, Haemophilus influenzae and Streptococcus pneumoniae (Mixed Gram Positive and Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147196
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147196/suppl/GSM147196.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147197 | GPL201 |
|
VAP_patient18_time19
|
VAP_patient18_time19
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 47
Ethnicity: Caucasian
Infecting Organism: Escerischia coli, Haemophilus influenzae and Streptococcus pneumoniae (Mixed Gram Positive and Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147197
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147197/suppl/GSM147197.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147198 | GPL201 |
|
VAP_patient18_time21
|
VAP_patient18_time21
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 47
Ethnicity: Caucasian
Infecting Organism: Escerischia coli, Haemophilus influenzae and Streptococcus pneumoniae (Mixed Gram Positive and Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147198
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147198/suppl/GSM147198.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147199 | GPL201 |
|
VAP_patient11_time1
|
VAP_patient11_time1
|
Tissue: Blood
VAP: Day 5
Gender: Female
Age: 44
Ethnicity: African American
Infecting Organism: Acinetobacter calcoaceticus-baumanii (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147199
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147199/suppl/GSM147199.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147200 | GPL201 |
|
VAP_patient11_time3
|
VAP_patient11_time3
|
Tissue: Blood
VAP: Day 5
Gender: Female
Age: 44
Ethnicity: African American
Infecting Organism: Acinetobacter calcoaceticus-baumanii (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147200
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147200/suppl/GSM147200.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147201 | GPL201 |
|
VAP_patient11_time5
|
VAP_patient11_time5
|
Tissue: Blood
VAP: Day 5
Gender: Female
Age: 44
Ethnicity: African American
Infecting Organism: Acinetobacter calcoaceticus-baumanii (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147201
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147201/suppl/GSM147201.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147202 | GPL201 |
|
VAP_patient11_time7
|
VAP_patient11_time7
|
Tissue: Blood
VAP: Day 5
Gender: Female
Age: 44
Ethnicity: African American
Infecting Organism: Acinetobacter calcoaceticus-baumanii (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147202
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147202/suppl/GSM147202.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147203 | GPL201 |
|
VAP_patient11_time9
|
VAP_patient11_time9
|
Tissue: Blood
VAP: Day 5
Gender: Female
Age: 44
Ethnicity: African American
Infecting Organism: Acinetobacter calcoaceticus-baumanii (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147203
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147203/suppl/GSM147203.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147204 | GPL201 |
|
VAP_patient11_time11
|
VAP_patient11_time11
|
Tissue: Blood
VAP: Day 5
Gender: Female
Age: 44
Ethnicity: African American
Infecting Organism: Acinetobacter calcoaceticus-baumanii (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147204
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147204/suppl/GSM147204.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147205 | GPL201 |
|
VAP_patient11_time13
|
VAP_patient11_time13
|
Tissue: Blood
VAP: Day 5
Gender: Female
Age: 44
Ethnicity: African American
Infecting Organism: Acinetobacter calcoaceticus-baumanii (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147205
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147205/suppl/GSM147205.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147206 | GPL201 |
|
VAP_patient10_time1
|
VAP_patient10_time1
|
Tissue: Blood
VAP: Day 19
Gender: Female
Age: 68
Ethnicity: Caucasian
Infecting Organism:3-Pantoea (enterobacter) agglomerans; 19-Stenotrophomonas maltophilia and Pseudomonas aeruginosa (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147206
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147206/suppl/GSM147206.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147207 | GPL201 |
|
VAP_patient10_time3
|
VAP_patient10_time3
|
Tissue: Blood
VAP: Day 19
Gender: Female
Age: 68
Ethnicity: Caucasian
Infecting Organism:3-Pantoea (enterobacter) agglomerans; 19-Stenotrophomonas maltophilia and Pseudomonas aeruginosa (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147207
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147207/suppl/GSM147207.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147208 | GPL201 |
|
VAP_patient10_time5
|
VAP_patient10_time5
|
Tissue: Blood
VAP: Day 19
Gender: Female
Age: 68
Ethnicity: Caucasian
Infecting Organism:3-Pantoea (enterobacter) agglomerans; 19-Stenotrophomonas maltophilia and Pseudomonas aeruginosa (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147208
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147208/suppl/GSM147208.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147209 | GPL201 |
|
VAP_patient10_time7
|
VAP_patient10_time7
|
Tissue: Blood
VAP: Day 19
Gender: Female
Age: 68
Ethnicity: Caucasian
Infecting Organism:3-Pantoea (enterobacter) agglomerans; 19-Stenotrophomonas maltophilia and Pseudomonas aeruginosa (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147209
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147209/suppl/GSM147209.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147210 | GPL201 |
|
VAP_patient10_time9
|
VAP_patient10_time9
|
Tissue: Blood
VAP: Day 19
Gender: Female
Age: 68
Ethnicity: Caucasian
Infecting Organism:3-Pantoea (enterobacter) agglomerans; 19-Stenotrophomonas maltophilia and Pseudomonas aeruginosa (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147210
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147210/suppl/GSM147210.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147211 | GPL201 |
|
VAP_patient10_time11
|
VAP_patient10_time11
|
Tissue: Blood
VAP: Day 19
Gender: Female
Age: 68
Ethnicity: Caucasian
Infecting Organism:3-Pantoea (enterobacter) agglomerans; 19-Stenotrophomonas maltophilia and Pseudomonas aeruginosa (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147211
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147211/suppl/GSM147211.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147212 | GPL201 |
|
VAP_patient10_time13
|
VAP_patient10_time13
|
Tissue: Blood
VAP: Day 19
Gender: Female
Age: 68
Ethnicity: Caucasian
Infecting Organism:3-Pantoea (enterobacter) agglomerans; 19-Stenotrophomonas maltophilia and Pseudomonas aeruginosa (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147212
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147212/suppl/GSM147212.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147213 | GPL201 |
|
VAP_patient10_time15
|
VAP_patient10_time15
|
Tissue: Blood
VAP: Day 19
Gender: Female
Age: 68
Ethnicity: Caucasian
Infecting Organism:3-Pantoea (enterobacter) agglomerans; 19-Stenotrophomonas maltophilia and Pseudomonas aeruginosa (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147213
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147213/suppl/GSM147213.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147214 | GPL201 |
|
VAP_patient10_time17
|
VAP_patient10_time17
|
Tissue: Blood
VAP: Day 19
Gender: Female
Age: 68
Ethnicity: Caucasian
Infecting Organism:3-Pantoea (enterobacter) agglomerans; 19-Stenotrophomonas maltophilia and Pseudomonas aeruginosa (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147214
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147214/suppl/GSM147214.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147215 | GPL201 |
|
VAP_patient10_time19
|
VAP_patient10_time19
|
Tissue: Blood
VAP: Day 19
Gender: Female
Age: 68
Ethnicity: Caucasian
Infecting Organism:3-Pantoea (enterobacter) agglomerans; 19-Stenotrophomonas maltophilia and Pseudomonas aeruginosa (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147215
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147215/suppl/GSM147215.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147216 | GPL201 |
|
VAP_patient10_time21
|
VAP_patient10_time21
|
Tissue: Blood
VAP: Day 19
Gender: Female
Age: 68
Ethnicity: Caucasian
Infecting Organism:3-Pantoea (enterobacter) agglomerans; 19-Stenotrophomonas maltophilia and Pseudomonas aeruginosa (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147216
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147216/suppl/GSM147216.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147217 | GPL201 |
|
VAP_patient9_time1
|
VAP_patient9_time1
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 20
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147217
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147217/suppl/GSM147217.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147218 | GPL201 |
|
VAP_patient9_time3
|
VAP_patient9_time3
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 20
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147218
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147218/suppl/GSM147218.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147219 | GPL201 |
|
VAP_patient9_time5
|
VAP_patient9_time5
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 20
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147219
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147219/suppl/GSM147219.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147220 | GPL201 |
|
VAP_patient9_time7
|
VAP_patient9_time7
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 20
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147220
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147220/suppl/GSM147220.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147221 | GPL201 |
|
VAP_patient9_time9
|
VAP_patient9_time9
|
Tissue: Blood
VAP: Day 6
Gender: Female
Age: 20
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147221
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147221/suppl/GSM147221.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147222 | GPL201 |
|
VAP_patient7_time1
|
VAP_patient7_time1
|
Tissue: Blood
VAP: Day 4
Gender: Female
Age: 76
Ethnicity: African American
Infecting Organism: Stenotrophomonas maltophilia (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147222
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147222/suppl/GSM147222.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147223 | GPL201 |
|
VAP_patient7_time3
|
VAP_patient7_time3
|
Tissue: Blood
VAP: Day 4
Gender: Female
Age: 76
Ethnicity: African American
Infecting Organism: Stenotrophomonas maltophilia (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147223
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147223/suppl/GSM147223.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147224 | GPL201 |
|
VAP_patient7_time5
|
VAP_patient7_time5
|
Tissue: Blood
VAP: Day 4
Gender: Female
Age: 76
Ethnicity: African American
Infecting Organism: Stenotrophomonas maltophilia (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147224
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147224/suppl/GSM147224.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147225 | GPL201 |
|
VAP_patient7_time7
|
VAP_patient7_time7
|
Tissue: Blood
VAP: Day 4
Gender: Female
Age: 76
Ethnicity: African American
Infecting Organism: Stenotrophomonas maltophilia (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147225
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147225/suppl/GSM147225.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147226 | GPL201 |
|
VAP_patient7_time9
|
VAP_patient7_time9
|
Tissue: Blood
VAP: Day 4
Gender: Female
Age: 76
Ethnicity: African American
Infecting Organism: Stenotrophomonas maltophilia (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147226
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147226/suppl/GSM147226.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147227 | GPL201 |
|
VAP_patient7_time11
|
VAP_patient7_time11
|
Tissue: Blood
VAP: Day 4
Gender: Female
Age: 76
Ethnicity: African American
Infecting Organism: Stenotrophomonas maltophilia (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147227
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147227/suppl/GSM147227.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147228 | GPL201 |
|
VAP_patient7_time13
|
VAP_patient7_time13
|
Tissue: Blood
VAP: Day 4
Gender: Female
Age: 76
Ethnicity: African American
Infecting Organism: Stenotrophomonas maltophilia (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147228
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147228/suppl/GSM147228.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147229 | GPL201 |
|
VAP_patient7_time15
|
VAP_patient7_time15
|
Tissue: Blood
VAP: Day 4
Gender: Female
Age: 76
Ethnicity: African American
Infecting Organism: Stenotrophomonas maltophilia (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147229
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147229/suppl/GSM147229.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147230 | GPL201 |
|
VAP_patient7_time17
|
VAP_patient7_time17
|
Tissue: Blood
VAP: Day 4
Gender: Female
Age: 76
Ethnicity: African American
Infecting Organism: Stenotrophomonas maltophilia (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147230
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147230/suppl/GSM147230.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147231 | GPL201 |
|
VAP_patient7_time19
|
VAP_patient7_time19
|
Tissue: Blood
VAP: Day 4
Gender: Female
Age: 76
Ethnicity: African American
Infecting Organism: Stenotrophomonas maltophilia (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147231
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147231/suppl/GSM147231.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147232 | GPL201 |
|
VAP_patient7_time21
|
VAP_patient7_time21
|
Tissue: Blood
VAP: Day 4
Gender: Female
Age: 76
Ethnicity: African American
Infecting Organism: Stenotrophomonas maltophilia (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147232
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147232/suppl/GSM147232.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147233 | GPL201 |
|
VAP_patient5_time1
|
VAP_patient5_time1
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 49
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147233
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147233/suppl/GSM147233.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147234 | GPL201 |
|
VAP_patient5_time3
|
VAP_patient5_time3
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 49
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147234
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147234/suppl/GSM147234.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147235 | GPL201 |
|
VAP_patient5_time5
|
VAP_patient5_time5
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 49
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147235
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147235/suppl/GSM147235.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147236 | GPL201 |
|
VAP_patient5_time7
|
VAP_patient5_time7
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 49
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147236
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147236/suppl/GSM147236.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147237 | GPL201 |
|
VAP_patient5_time9
|
VAP_patient5_time9
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 49
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147237
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147237/suppl/GSM147237.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147238 | GPL201 |
|
VAP_patient5_time11
|
VAP_patient5_time11
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 49
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147238
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147238/suppl/GSM147238.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147239 | GPL201 |
|
VAP_patient5_time13
|
VAP_patient5_time13
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 49
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147239
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147239/suppl/GSM147239.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147240 | GPL201 |
|
VAP_patient5_time15
|
VAP_patient5_time15
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 49
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147240
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147240/suppl/GSM147240.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147241 | GPL201 |
|
VAP_patient5_time17
|
VAP_patient5_time17
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 49
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147241
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147241/suppl/GSM147241.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147242 | GPL201 |
|
VAP_patient5_time19
|
VAP_patient5_time19
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 49
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147242
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147242/suppl/GSM147242.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147243 | GPL201 |
|
VAP_patient5_time21
|
VAP_patient5_time21
|
Tissue: Blood
VAP: Day 3
Gender: Female
Age: 49
Ethnicity: Caucasian
Infecting Organism: Staphylococcus aureus (Gram Positive)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147243
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147243/suppl/GSM147243.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147244 | GPL201 |
|
VAP_patient3_time1
|
VAP_patient3_time1
|
Tissue: Blood
VAP: Day 4
Gender: Male
Age: 69
Ethnicity: Caucasian
Infecting Organism: Enterobacter aerogenes (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147244
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147244/suppl/GSM147244.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147245 | GPL201 |
|
VAP_patient3_time3
|
VAP_patient3_time3
|
Tissue: Blood
VAP: Day 4
Gender: Male
Age: 69
Ethnicity: Caucasian
Infecting Organism: Enterobacter aerogenes (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147245
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147245/suppl/GSM147245.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147246 | GPL201 |
|
VAP_patient3_time5
|
VAP_patient3_time5
|
Tissue: Blood
VAP: Day 4
Gender: Male
Age: 69
Ethnicity: Caucasian
Infecting Organism: Enterobacter aerogenes (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147246
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147246/suppl/GSM147246.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147247 | GPL201 |
|
VAP_patient3_time7
|
VAP_patient3_time7
|
Tissue: Blood
VAP: Day 4
Gender: Male
Age: 69
Ethnicity: Caucasian
Infecting Organism: Enterobacter aerogenes (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147247
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147247/suppl/GSM147247.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147248 | GPL201 |
|
VAP_patient3_time9
|
VAP_patient3_time9
|
Tissue: Blood
VAP: Day 4
Gender: Male
Age: 69
Ethnicity: Caucasian
Infecting Organism: Enterobacter aerogenes (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147248
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147248/suppl/GSM147248.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147249 | GPL201 |
|
VAP_patient3_time11
|
VAP_patient3_time11
|
Tissue: Blood
VAP: Day 4
Gender: Male
Age: 69
Ethnicity: Caucasian
Infecting Organism: Enterobacter aerogenes (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147249
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147249/suppl/GSM147249.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147250 | GPL201 |
|
VAP_patient3_time13
|
VAP_patient3_time13
|
Tissue: Blood
VAP: Day 4
Gender: Male
Age: 69
Ethnicity: Caucasian
Infecting Organism: Enterobacter aerogenes (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147250
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147250/suppl/GSM147250.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147251 | GPL201 |
|
VAP_patient3_time15
|
VAP_patient3_time15
|
Tissue: Blood
VAP: Day 4
Gender: Male
Age: 69
Ethnicity: Caucasian
Infecting Organism: Enterobacter aerogenes (Gram Negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147251
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147251/suppl/GSM147251.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147252 | GPL201 |
|
VAP_patient2_time1
|
VAP_patient2_time1
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 21
Ethnicity: Caucasian
Infecting Organism: Acinetobacter calcoaceticus-baumanii & Serratia marcescens (Gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147252
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147252/suppl/GSM147252.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147253 | GPL201 |
|
VAP_patient2_time3
|
VAP_patient2_time3
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 21
Ethnicity: Caucasian
Infecting Organism: Acinetobacter calcoaceticus-baumanii & Serratia marcescens (Gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147253
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147253/suppl/GSM147253.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147254 | GPL201 |
|
VAP_patient2_time5
|
VAP_patient2_time5
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 21
Ethnicity: Caucasian
Infecting Organism: Acinetobacter calcoaceticus-baumanii & Serratia marcescens (Gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147254
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147254/suppl/GSM147254.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147255 | GPL201 |
|
VAP_patient2_time7
|
VAP_patient2_time7
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 21
Ethnicity: Caucasian
Infecting Organism: Acinetobacter calcoaceticus-baumanii & Serratia marcescens (Gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147255
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147255/suppl/GSM147255.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147256 | GPL201 |
|
VAP_patient2_time9
|
VAP_patient2_time9
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 21
Ethnicity: Caucasian
Infecting Organism: Acinetobacter calcoaceticus-baumanii & Serratia marcescens (Gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147256
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147256/suppl/GSM147256.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147257 | GPL201 |
|
VAP_patient2_time11
|
VAP_patient2_time11
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 21
Ethnicity: Caucasian
Infecting Organism: Acinetobacter calcoaceticus-baumanii & Serratia marcescens (Gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147257
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147257/suppl/GSM147257.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147258 | GPL201 |
|
VAP_patient2_time13
|
VAP_patient2_time13
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 21
Ethnicity: Caucasian
Infecting Organism: Acinetobacter calcoaceticus-baumanii & Serratia marcescens (Gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147258
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147258/suppl/GSM147258.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147259 | GPL201 |
|
VAP_patient2_time17
|
VAP_patient2_time17
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 21
Ethnicity: Caucasian
Infecting Organism: Acinetobacter calcoaceticus-baumanii & Serratia marcescens (Gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147259
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147259/suppl/GSM147259.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147260 | GPL201 |
|
VAP_patient2_time19
|
VAP_patient2_time19
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 21
Ethnicity: Caucasian
Infecting Organism: Acinetobacter calcoaceticus-baumanii & Serratia marcescens (Gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147260
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147260/suppl/GSM147260.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147261 | GPL201 |
|
VAP_patient2_time21
|
VAP_patient2_time21
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 21
Ethnicity: Caucasian
Infecting Organism: Acinetobacter calcoaceticus-baumanii & Serratia marcescens (Gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147261
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147261/suppl/GSM147261.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147262 | GPL201 |
|
VAP_patient1_time1
|
VAP_patient1_time1
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 64
Ethnicity: Caucasian
Infecting Organism: Serratia marcescens (gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147262
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147262/suppl/GSM147262.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147263 | GPL201 |
|
VAP_patient1_time3
|
VAP_patient1_time3
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 64
Ethnicity: Caucasian
Infecting Organism: Serratia marcescens (gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147263
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147263/suppl/GSM147263.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147264 | GPL201 |
|
VAP_patient1_time5
|
VAP_patient1_time5
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 64
Ethnicity: Caucasian
Infecting Organism: Serratia marcescens (gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147264
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147264/suppl/GSM147264.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147265 | GPL201 |
|
VAP_patient1_time7
|
VAP_patient1_time7
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 64
Ethnicity: Caucasian
Infecting Organism: Serratia marcescens (gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147265
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147265/suppl/GSM147265.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147266 | GPL201 |
|
VAP_patient1_time9
|
VAP_patient1_time9
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 64
Ethnicity: Caucasian
Infecting Organism: Serratia marcescens (gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147266
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147266/suppl/GSM147266.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147267 | GPL201 |
|
VAP_patient1_time11
|
VAP_patient1_time11
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 64
Ethnicity: Caucasian
Infecting Organism: Serratia marcescens (gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147267
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147267/suppl/GSM147267.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147268 | GPL201 |
|
VAP_patient1_time13
|
VAP_patient1_time13
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 64
Ethnicity: Caucasian
Infecting Organism: Serratia marcescens (gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147268
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147268/suppl/GSM147268.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147269 | GPL201 |
|
VAP_patient1_time15
|
VAP_patient1_time15
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 64
Ethnicity: Caucasian
Infecting Organism: Serratia marcescens (gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147269
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147269/suppl/GSM147269.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147270 | GPL201 |
|
VAP_patient1_time17
|
VAP_patient1_time17
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 64
Ethnicity: Caucasian
Infecting Organism: Serratia marcescens (gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147270
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147270/suppl/GSM147270.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
GSM147271 | GPL201 |
|
VAP_patient1_time19
|
VAP_patient1_time19
|
Tissue: Blood
VAP: Day 6
Gender: Male
Age: 64
Ethnicity: Caucasian
Infecting Organism: Serratia marcescens (gram negative)
|
Gene expression data (Affy Chip Hg-Focus)
|
| Sample_geo_accession | GSM147271
| | Sample_status | Public on Feb 12 2008
| | Sample_submission_date | Nov 27 2006
| | Sample_last_update_date | Jan 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Circulating white blood cells were recovered from blood following the Trauma Glue Grant protocol G025.09 (www.gluegrant.org). The RNA was then extracted from leukocytes using the RNeasy Midi columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotintalated cRNA was prepared from 2 micrograms RNA using Affymetrix’s IVT labeling kit using, in accordance with the Trauma Glue Grant’s G007.09 protocol (www.gluegrant.org)
| | Sample_hyb_protocol | 10 micrograms cRNA was hybed for 16 hours at 45 degrees on the Affymetrix Human Genome Focus Arrays. The washes and stains wee done on the Affymetrix’s GeneChip Fluidics Station 450 with program Midi_euk2v3.
| | Sample_scan_protocol | Gene Chips were scanned on the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed (including normalization and modelling) with RMA
| | Sample_platform_id | GPL201
| | Sample_contact_name | J,Perren,Cobb
| | Sample_contact_email | jpcobb@partners.org
| | Sample_contact_phone | 314-362-1264
| | Sample_contact_fax | 314-362-7474
| | Sample_contact_laboratory | Cellular Injury and Adaptation Laboratory
| | Sample_contact_institute | Washington University in St. Louis
| | Sample_contact_address | Campus Box 8109, 660 South Euclid Avenue
| | Sample_contact_city | St. Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_contact_web_link | www.cia.wustl.edu
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM147nnn/GSM147271/suppl/GSM147271.CEL.gz
| | Sample_series_id | GSE6377
| | Sample_data_row_count | 8793
| | |
|
| |
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