Search results for the GEO ID: GSE6465  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM148594 | GPL570 |
|
Cell line Hep3B(a)
|
cell line
|
Tissue: liver
|
Gene expression data for cell line
|
| Sample_geo_accession | GSM148594
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148594/suppl/GSM148594.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148595 | GPL570 |
|
Cell line HepG2(b)
|
cell line
|
Tissue: liver
|
Gene expression data for cell line
|
| Sample_geo_accession | GSM148595
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148595/suppl/GSM148595.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148596 | GPL570 |
|
Cell line HK-Hep1(b)
|
cell line
|
Tissue: liver
|
Gene expression data for cell line
|
| Sample_geo_accession | GSM148596
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148596/suppl/GSM148596.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148597 | GPL570 |
|
Cell line PLC-PRL(b)
|
cell line
|
Tissue: liver
|
Gene expression data for cell line
|
| Sample_geo_accession | GSM148597
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148597/suppl/GSM148597.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148598 | GPL570 |
|
Xenograft 2-1318-xeno
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft
|
| Sample_geo_accession | GSM148598
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148598/suppl/GSM148598.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148599 | GPL570 |
|
Xenograft 5-1318-3
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft
|
| Sample_geo_accession | GSM148599
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148599/suppl/GSM148599.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148600 | GPL570 |
|
Xenograft 5-1318
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft
|
| Sample_geo_accession | GSM148600
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148600/suppl/GSM148600.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148601 | GPL570 |
|
Xenograft 26-1004-xeno
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft
|
| Sample_geo_accession | GSM148601
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148601/suppl/GSM148601.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148602 | GPL570 |
|
Xenograft 30-1004-xeno
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft
|
| Sample_geo_accession | GSM148602
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148602/suppl/GSM148602.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148603 | GPL570 |
|
Xenograft 2006-xeno
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft
|
| Sample_geo_accession | GSM148603
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148603/suppl/GSM148603.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148604 | GPL570 |
|
Xenograft 26-1004 cirr xeno (b)
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft
|
| Sample_geo_accession | GSM148604
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148604/suppl/GSM148604.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148605 | GPL570 |
|
Primary 2-1318(13.08.01)
|
PrimaryHepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for primary
|
| Sample_geo_accession | GSM148605
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148605/suppl/GSM148605.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148606 | GPL570 |
|
Primary 5-1318(13.08.01)
|
PrimaryHepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for primary
|
| Sample_geo_accession | GSM148606
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148606/suppl/GSM148606.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148607 | GPL570 |
|
Primary 5-1318-3(13.08.01)
|
PrimaryHepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for primary
|
| Sample_geo_accession | GSM148607
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148607/suppl/GSM148607.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148608 | GPL570 |
|
Primary 26-1004(26.10.04)
|
PrimaryHepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for primary
|
| Sample_geo_accession | GSM148608
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148608/suppl/GSM148608.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148609 | GPL570 |
|
Primary 30-1004(30.08.01)
|
PrimaryHepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for primary
|
| Sample_geo_accession | GSM148609
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148609/suppl/GSM148609.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148610 | GPL570 |
|
Primary 2006(20.06.01)
|
PrimaryHepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for primary
|
| Sample_geo_accession | GSM148610
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148610/suppl/GSM148610.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148611 | GPL570 |
|
Primary 26-1004 cirr primary (b)
|
PrimaryHepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for primary
|
| Sample_geo_accession | GSM148611
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148611/suppl/GSM148611.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148612 | GPL570 |
|
Xenograft treated with RAPA/BEV 2-1318 av+rapa 9a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA/BEV
|
| Sample_geo_accession | GSM148612
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148612/suppl/GSM148612.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148613 | GPL570 |
|
Xenograft treated with RAPA/BEV 2-1318 av+rapa 10a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA/BEV
|
| Sample_geo_accession | GSM148613
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148613/suppl/GSM148613.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148614 | GPL570 |
|
Xenograft treated with RAPA/BEV 2-1318 av+rapa 11a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA/BEV
|
| Sample_geo_accession | GSM148614
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148614/suppl/GSM148614.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148615 | GPL570 |
|
Xenograft treated with BEV 2-1318 avastin 5a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with BEV
|
| Sample_geo_accession | GSM148615
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148615/suppl/GSM148615.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148616 | GPL570 |
|
Xenograft treated with BEV 2-1318 avastin 7a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with BEV
|
| Sample_geo_accession | GSM148616
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148616/suppl/GSM148616.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148617 | GPL570 |
|
Xenograft treated with RAPA 2-1318 rapa 1b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA
|
| Sample_geo_accession | GSM148617
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148617/suppl/GSM148617.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148618 | GPL570 |
|
Xenograft treated with RAPA 2-1318 rapa 3b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA
|
| Sample_geo_accession | GSM148618
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148618/suppl/GSM148618.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148619 | GPL570 |
|
Xenograft treated with RAPA 2-1318 rapa 4a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA
|
| Sample_geo_accession | GSM148619
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148619/suppl/GSM148619.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148620 | GPL570 |
|
Xenograft control 2-1318a2 control
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft control
|
| Sample_geo_accession | GSM148620
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148620/suppl/GSM148620.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148621 | GPL570 |
|
Xenograft control 2-1318b1 control
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft control
|
| Sample_geo_accession | GSM148621
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148621/suppl/GSM148621.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148622 | GPL570 |
|
Xenograft control 2-1318c1 control
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft control
|
| Sample_geo_accession | GSM148622
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148622/suppl/GSM148622.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148623 | GPL570 |
|
Xenograft treated with RAPA/BEV 5-1318-3 av+rapa 23a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA/BEV
|
| Sample_geo_accession | GSM148623
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148623/suppl/GSM148623.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148624 | GPL570 |
|
Xenograft treated with RAPA/BEV 5-1318-3 av+rapa 24a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA/BEV
|
| Sample_geo_accession | GSM148624
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148624/suppl/GSM148624.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148625 | GPL570 |
|
Xenograft treated with RAPA/BEV 5-1318-3 av+rapa 25a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA/BEV
|
| Sample_geo_accession | GSM148625
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148625/suppl/GSM148625.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148626 | GPL570 |
|
Xenograft treated with BEV 5-1318-3 avastin 19b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with BEV
|
| Sample_geo_accession | GSM148626
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148626/suppl/GSM148626.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148627 | GPL570 |
|
Xenograft treated with BEV 5-1318-3 avastin 20a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with BEV
|
| Sample_geo_accession | GSM148627
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148627/suppl/GSM148627.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148628 | GPL570 |
|
Xenograft treated with BEV 5-1318-3 avastin 21a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with BEV
|
| Sample_geo_accession | GSM148628
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148628/suppl/GSM148628.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148629 | GPL570 |
|
Xenograft treated with RAPA 5-1318-3 rapa 15b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA
|
| Sample_geo_accession | GSM148629
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148629/suppl/GSM148629.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148630 | GPL570 |
|
Xenograft treated with RAPA 5-1318-3 rapa 16b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA
|
| Sample_geo_accession | GSM148630
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148630/suppl/GSM148630.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148631 | GPL570 |
|
Xenograft treated with RAPA 5-1318-3 rapa 17b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA
|
| Sample_geo_accession | GSM148631
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148631/suppl/GSM148631.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148632 | GPL570 |
|
Xenograft control 5-1318-3a2 control
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft control
|
| Sample_geo_accession | GSM148632
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148632/suppl/GSM148632.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148633 | GPL570 |
|
Xenograft control 5-1318-3b1 control
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft control
|
| Sample_geo_accession | GSM148633
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148633/suppl/GSM148633.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148634 | GPL570 |
|
Xenograft control 5-1318-3c1 control
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft control
|
| Sample_geo_accession | GSM148634
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148634/suppl/GSM148634.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148635 | GPL570 |
|
Xenograft treated with RAPA/BEV 26-1004 av+rapa 37b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA/BEV
|
| Sample_geo_accession | GSM148635
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148635/suppl/GSM148635.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148636 | GPL570 |
|
Xenograft treated with RAPA/BEV 26-1004 av+rapa 39a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA/BEV
|
| Sample_geo_accession | GSM148636
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148636/suppl/GSM148636.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148637 | GPL570 |
|
Xenograft treated with RAPA/BEV 26-1004 av+rapa 41b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA/BEV
|
| Sample_geo_accession | GSM148637
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148637/suppl/GSM148637.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148638 | GPL570 |
|
Xenograft treated with BEV 26-1004 avastin 33b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with BEV
|
| Sample_geo_accession | GSM148638
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148638/suppl/GSM148638.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148639 | GPL570 |
|
Xenograft treated with BEV 26-1004 avastin 34b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with BEV
|
| Sample_geo_accession | GSM148639
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148639/suppl/GSM148639.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148640 | GPL570 |
|
Xenograft treated with BEV 26-1004 avastin 35b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with BEV
|
| Sample_geo_accession | GSM148640
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148640/suppl/GSM148640.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148641 | GPL570 |
|
Xenograft treated with RAPA 26-1004 rapa 29b
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA
|
| Sample_geo_accession | GSM148641
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148641/suppl/GSM148641.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148642 | GPL570 |
|
Xenograft treated with RAPA 26-1004 rapa 31a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA
|
| Sample_geo_accession | GSM148642
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148642/suppl/GSM148642.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148643 | GPL570 |
|
Xenograft treated with RAPA 26-1004 rapa 32a
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft treated with RAPA
|
| Sample_geo_accession | GSM148643
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148643/suppl/GSM148643.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148644 | GPL570 |
|
Xenograft control 26-1004a1 control
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft control
|
| Sample_geo_accession | GSM148644
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148644/suppl/GSM148644.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148645 | GPL570 |
|
Xenograft control 26-1004b1 control
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft control
|
| Sample_geo_accession | GSM148645
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148645/suppl/GSM148645.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
|
GSM148646 | GPL570 |
|
Xenograft control 26-1004c1 control
|
Xenografts of Hepatocellular Carcinoma
|
Tissue: liver
|
Gene expression data for xenograft control
|
| Sample_geo_accession | GSM148646
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Dec 06 2006
| | Sample_last_update_date | Nov 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner GCS3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Yu
| | Sample_contact_email | yukun@omniarray.com
| | Sample_contact_phone | +65 64368390
| | Sample_contact_department | Cellular & Molecular Research
| | Sample_contact_institute | National Cancer Centre
| | Sample_contact_address |
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 169610
| | Sample_contact_country | Singapore
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM148nnn/GSM148646/suppl/GSM148646.CEL.gz
| | Sample_series_id | GSE6465
| | Sample_data_row_count | 54675
| | |
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Make groups for comparisons |
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| Select GSMs and click on "Add groups" |
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