Search results for the GEO ID: GSE6575 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM151962 | GPL570 |
|
whole blood_100683
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151962
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151962/suppl/GSM151962.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151963 | GPL570 |
|
whole blood_101291
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151963
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151963/suppl/GSM151963.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151964 | GPL570 |
|
whole blood_100923
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151964
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151964/suppl/GSM151964.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151965 | GPL570 |
|
whole blood_100652
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151965
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151965/suppl/GSM151965.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151966 | GPL570 |
|
whole blood_101584
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151966
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151966/suppl/GSM151966.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151967 | GPL570 |
|
whole blood_100676
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151967
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151967/suppl/GSM151967.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151968 | GPL570 |
|
whole blood_100812
|
Whole blood - Autism no regression, Female
|
Autism no regression, Female
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151968
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151968/suppl/GSM151968.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151969 | GPL570 |
|
whole blood_101007
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151969
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151969/suppl/GSM151969.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151970 | GPL570 |
|
whole blood_101611
|
Whole blood - Autism no regression, Female
|
Autism no regression, Female
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151970
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151970/suppl/GSM151970.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151971 | GPL570 |
|
whole blood_101832
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151971
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151971/suppl/GSM151971.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151972 | GPL570 |
|
whole blood_101094
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151972
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151972/suppl/GSM151972.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151973 | GPL570 |
|
whole blood_100537
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151973
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151973/suppl/GSM151973.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151974 | GPL570 |
|
whole blood_101369
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151974
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151974/suppl/GSM151974.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151975 | GPL570 |
|
whole blood_100603
|
Whole blood - Autism no regression, Female
|
Autism no regression, Female
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151975
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151975/suppl/GSM151975.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151976 | GPL570 |
|
whole blood_100309
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151976
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151976/suppl/GSM151976.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151977 | GPL570 |
|
whole blood_100476
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151977
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151977/suppl/GSM151977.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151978 | GPL570 |
|
whole blood_100247
|
Whole blood - Autism no regression, Male
|
Autism no regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151978
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151978/suppl/GSM151978.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151979 | GPL570 |
|
whole blood_101592
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151979
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151979/suppl/GSM151979.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151980 | GPL570 |
|
whole blood_101025
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151980
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151980/suppl/GSM151980.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151981 | GPL570 |
|
whole blood_100214
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151981
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151981/suppl/GSM151981.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151982 | GPL570 |
|
whole blood_101060
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151982
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151982/suppl/GSM151982.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151983 | GPL570 |
|
whole blood_101062
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151983
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151983/suppl/GSM151983.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151984 | GPL570 |
|
whole blood_101209
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151984
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151984/suppl/GSM151984.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151985 | GPL570 |
|
whole blood_100823
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151985
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151985/suppl/GSM151985.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151986 | GPL570 |
|
whole blood_101234
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151986
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151986/suppl/GSM151986.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151987 | GPL570 |
|
whole blood_100716
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151987
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151987/suppl/GSM151987.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151988 | GPL570 |
|
whole blood_101700
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151988
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151988/suppl/GSM151988.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151989 | GPL570 |
|
whole blood_102321
|
Whole blood - Autism with regression, Female
|
Autism with regression, Female
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151989
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151989/suppl/GSM151989.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151990 | GPL570 |
|
whole blood_101669
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151990
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151990/suppl/GSM151990.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151991 | GPL570 |
|
whole blood_100158
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151991
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151991/suppl/GSM151991.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151992 | GPL570 |
|
whole blood_101682
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151992
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151992/suppl/GSM151992.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151993 | GPL570 |
|
whole blood_100251
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151993
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151993/suppl/GSM151993.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151994 | GPL570 |
|
whole blood_100278
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151994
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151994/suppl/GSM151994.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151995 | GPL570 |
|
whole blood_100689
|
Whole blood - Autism with regression, Male
|
Autism with regression, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151995
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151995/suppl/GSM151995.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151996 | GPL570 |
|
whole blood_100416
|
Whole blood - Autism with regression, Female
|
Autism with regression, Female
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151996
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151996/suppl/GSM151996.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151997 | GPL570 |
|
whole blood_100981
|
Whole blood - General population, Male
|
General population, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151997
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151997/suppl/GSM151997.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151998 | GPL570 |
|
whole blood_101339
|
Whole blood - General population, Male
|
General population, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151998
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151998/suppl/GSM151998.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM151999 | GPL570 |
|
whole blood_101644
|
Whole blood - General population, Male
|
General population, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM151999
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM151nnn/GSM151999/suppl/GSM151999.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152000 | GPL570 |
|
whole blood_100354
|
Whole blood - General population, Female
|
General population, Female
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152000
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152000/suppl/GSM152000.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152001 | GPL570 |
|
whole blood_101074
|
Whole blood - General population, Female
|
General population, Female
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152001
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152001/suppl/GSM152001.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152002 | GPL570 |
|
whole blood_101467
|
Whole blood - General population, Male
|
General population, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152002
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152002/suppl/GSM152002.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152003 | GPL570 |
|
whole blood_101726
|
Whole blood - General population, Male
|
General population, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152003
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152003/suppl/GSM152003.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152004 | GPL570 |
|
whole blood_100409
|
Whole blood - General population, Male
|
General population, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152004
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152004/suppl/GSM152004.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152005 | GPL570 |
|
whole blood_101794
|
Whole blood - General population, Male
|
General population, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152005
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152005/suppl/GSM152005.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152006 | GPL570 |
|
whole blood_100374
|
Whole blood - General population, Male
|
General population, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152006
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152006/suppl/GSM152006.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152007 | GPL570 |
|
whole blood_100190
|
Whole blood - General population, Female
|
General population, Female
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152007
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152007/suppl/GSM152007.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152008 | GPL570 |
|
whole blood_100801
|
Whole blood - General population, Male
|
General population, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152008
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152008/suppl/GSM152008.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152009 | GPL570 |
|
whole blood_100961
|
Whole blood - mental retardation or developmental delay, Female
|
mental retardation or developmental delay, Female
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152009
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152009/suppl/GSM152009.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152010 | GPL570 |
|
whole blood_100760
|
Whole blood - mental retardation or developmental delay, Female
|
mental retardation or developmental delay, Female
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152010
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152010/suppl/GSM152010.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152011 | GPL570 |
|
whole blood_101872
|
Whole blood - mental retardation or developmental delay, Male
|
mental retardation or developmental delay, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152011
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152011/suppl/GSM152011.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152012 | GPL570 |
|
whole blood_101446
|
Whole blood - mental retardation or developmental delay, Male
|
mental retardation or developmental delay, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152012
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152012/suppl/GSM152012.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152013 | GPL570 |
|
whole blood_101621
|
Whole blood - mental retardation or developmental delay, Male
|
mental retardation or developmental delay, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152013
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152013/suppl/GSM152013.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152014 | GPL570 |
|
whole blood_100240
|
Whole blood - mental retardation or developmental delay, Male
|
mental retardation or developmental delay, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152014
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152014/suppl/GSM152014.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152015 | GPL570 |
|
whole blood_100346
|
Whole blood - mental retardation or developmental delay, Male
|
mental retardation or developmental delay, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152015
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152015/suppl/GSM152015.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152016 | GPL570 |
|
whole blood_100265
|
Whole blood - mental retardation or developmental delay, Male
|
mental retardation or developmental delay, Male
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152016
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152016/suppl/GSM152016.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
GSM152017 | GPL570 |
|
whole blood_100315
|
Whole blood - mental retardation or developmental delay, Female
|
mental retardation or developmental delay, Female
|
Gene expression in blood of children with autism spectrum disorder (ASD) was studied. Transcriptional profiles were compared with age and gender matched, typically developing children from the general population (GP) or IQ matched children with mental retardation or developmental delay (MR/DD).
|
Sample_geo_accession | GSM152017
| Sample_status | Public on Jun 26 2008
| Sample_submission_date | Dec 20 2006
| Sample_last_update_date | Jun 27 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | none
| Sample_growth_protocol_ch1 | none
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from whole blood samples using the PaxGene Blood RNA System according the manufacturer’s specifications.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 3 micrograms of total RNA according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hrs at 45C on the Human Genome U133 Plus 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using wash protocol EukGE-WS2v5.
| Sample_scan_protocol | Arrays were scanned on a GeneChip® Scanner 3000 7G
| Sample_data_processing | Raw data values were imported into GENESPRING 7.2 software (Agilent Technologies, Palo Alto, CA) and processed using GC-RMA, followed by normalization. A three-step normalization procedure was applied to raw expression values (Genespring 2004). First, values less than 0.01 were set to 0.01 (data transformation). Second, per chip normalization was performed by dividing each measurement by the 50.0th percentile of all measurements in that sample. Third, each gene was divided by the median of its measurements in all samples (per gene normalization).
| Sample_platform_id | GPL570
| Sample_contact_name | Jeffrey,,Gregg
| Sample_contact_email | jpgregg@ucdavis.edu
| Sample_contact_phone | 916-703-0360
| Sample_contact_department |
| Sample_contact_institute | University of California, Davis School of Medicine
| Sample_contact_address |
| Sample_contact_city | Sacramento
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 95817
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152017/suppl/GSM152017.CEL.gz
| Sample_series_id | GSE6575
| Sample_data_row_count | 54675
| |
|
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Select GSMs and click on "Add groups" |
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