Search results for the GEO ID: GSE6596  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM152336 | GPL96 |
|
692N
|
Normal Mammary gland
|
Normal human breast tissue
|
Age: 73, Histology: Normal breast tissue
|
| Sample_geo_accession | GSM152336
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152336/suppl/GSM152336.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152337 | GPL96 |
|
Npool
|
Normal Mammary gland
|
Normal human breast tissue
|
Epithelial cell purified sample of a normal human breast tissue pool
|
| Sample_geo_accession | GSM152337
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152337/suppl/GSM152337.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152338 | GPL96 |
|
01T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 52, Histology: IDC, Tumor stage: 1, Tumor grade: 3
|
| Sample_geo_accession | GSM152338
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152338/suppl/GSM152338.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152339 | GPL96 |
|
02T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 56, Histology: IDC, Tumor stage: 1, Tumor grade: 2
|
| Sample_geo_accession | GSM152339
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Sep 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152339/suppl/GSM152339.CEL.gz
| | Sample_relation | Reanalyzed by: GSE31519
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152340 | GPL96 |
|
04T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 79, Histology: IDC (+ILC), Tumor stage: 1, Tumor grade: 2
|
| Sample_geo_accession | GSM152340
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152340/suppl/GSM152340.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152341 | GPL96 |
|
05T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 68, Histology: IDC, Tumor stage: 1, Tumor grade: 2
|
| Sample_geo_accession | GSM152341
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152341/suppl/GSM152341.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152342 | GPL96 |
|
09T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 75, Histology: IDC, Tumor stage: 2, Tumor grade: 2
|
| Sample_geo_accession | GSM152342
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152342/suppl/GSM152342.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152343 | GPL96 |
|
210T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 85, Histology: IDC, Tumor stage: 4, Tumor grade: 3
|
| Sample_geo_accession | GSM152343
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Sep 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152343/suppl/GSM152343.CEL.gz
| | Sample_relation | Reanalyzed by: GSE31519
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152344 | GPL96 |
|
218T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 29, Histology: IDC, Tumor stage: 2, Tumor grade: 2
|
| Sample_geo_accession | GSM152344
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Sep 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152344/suppl/GSM152344.CEL.gz
| | Sample_relation | Reanalyzed by: GSE31519
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152345 | GPL96 |
|
263T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 75, Histology: ILC, Tumor stage: 4, Tumor grade: 2
|
| Sample_geo_accession | GSM152345
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152345/suppl/GSM152345.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152346 | GPL96 |
|
266T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 53, Histology: ILC, Tumor stage: 1, Tumor grade: 2
|
| Sample_geo_accession | GSM152346
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152346/suppl/GSM152346.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152347 | GPL96 |
|
268T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 56, Histology: IDC, Tumor stage: 4, Tumor grade: 3
|
| Sample_geo_accession | GSM152347
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152347/suppl/GSM152347.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152348 | GPL96 |
|
303T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 57, Histology: IDC, Tumor stage: 1, Tumor grade: 2
|
| Sample_geo_accession | GSM152348
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152348/suppl/GSM152348.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152349 | GPL96 |
|
430T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 65, Histology: IDC, Tumor stage: 4, Tumor grade: 3
|
| Sample_geo_accession | GSM152349
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Sep 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152349/suppl/GSM152349.CEL.gz
| | Sample_relation | Reanalyzed by: GSE31519
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152350 | GPL96 |
|
457T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 51, Histology: DCIS, Tumor stage: is, Tumor grade: 3
|
| Sample_geo_accession | GSM152350
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152350/suppl/GSM152350.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152351 | GPL96 |
|
484T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 53, Histology: IDC, Tumor stage: 1, Tumor grade: 3
|
| Sample_geo_accession | GSM152351
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152351/suppl/GSM152351.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152352 | GPL96 |
|
496T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 65, Histology: IDC, Tumor stage: 2, Tumor grade: 3
|
| Sample_geo_accession | GSM152352
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Sep 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152352/suppl/GSM152352.CEL.gz
| | Sample_relation | Reanalyzed by: GSE31519
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152353 | GPL96 |
|
692T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 73, Histology: IDC, Tumor stage: 2, Tumor grade: 3
|
| Sample_geo_accession | GSM152353
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152353/suppl/GSM152353.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152354 | GPL96 |
|
712T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 40, Histology: IDC, Tumor stage: 1, Tumor grade: 2
|
| Sample_geo_accession | GSM152354
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152354/suppl/GSM152354.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152355 | GPL96 |
|
716T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 53, Histology: ILC, Tumor stage: 1, Tumor grade: 2
|
| Sample_geo_accession | GSM152355
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152355/suppl/GSM152355.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152356 | GPL96 |
|
719T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 45, Histology: IDC, Tumor stage: 1, Tumor grade: 1
|
| Sample_geo_accession | GSM152356
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152356/suppl/GSM152356.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152357 | GPL96 |
|
725T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 41, Histology: IDC, Tumor stage: 2, Tumor grade: 3
|
| Sample_geo_accession | GSM152357
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Sep 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152357/suppl/GSM152357.CEL.gz
| | Sample_relation | Reanalyzed by: GSE31519
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152358 | GPL96 |
|
726T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 60, Histology: IDC, Tumor stage: 1, Tumor grade: 2
|
| Sample_geo_accession | GSM152358
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152358/suppl/GSM152358.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152359 | GPL96 |
|
728T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 60, Histology: IDC, Tumor stage: 1, Tumor grade: 2
|
| Sample_geo_accession | GSM152359
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152359/suppl/GSM152359.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152360 | GPL96 |
|
733T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 49, Histology: IDC + ILC, Tumor stage: 1, Tumor grade: 2
|
| Sample_geo_accession | GSM152360
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Mar 09 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152360/suppl/GSM152360.CEL.gz
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
|
GSM152361 | GPL96 |
|
735T
|
Mammary gland from patient with human breast cancer
|
Human breast cancer
|
Age at diagnosis: 51, Histology: IDC, Tumor stage: 1, Tumor grade: 3
|
| Sample_geo_accession | GSM152361
| | Sample_status | Public on Mar 10 2007
| | Sample_submission_date | Dec 21 2006
| | Sample_last_update_date | Sep 23 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions (Life Technologies).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | cRNA was amplified from 1-2 µg of total RNA using the small sample labeling version II protocol (Affymetrix, Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, the cRNA was hybridized for 16 hr at 45C on GeneChip® Human Genome U133A Array. Washing steps for the chip, staining with streptavidin-phycoerythrin and signal-amplification were performed according to the manufacturer’s instructions.
| | Sample_scan_protocol | Each hybridized Affymetrix GeneChip array was scanned with GeneChip Scanner 2500.
| | Sample_data_processing | The raw experimental microarray data were normalized with the Affymetrix GeneChip analysis software (Microarray Suite Version 5.0). Further analyses were performed with the software “CorrXpression”.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Andreas,,Klein
| | Sample_contact_email | andreas.klein@charite.de
| | Sample_contact_phone | +49 30 450 528087
| | Sample_contact_fax | +49 30 450 52945
| | Sample_contact_department | Institute of Biochemistry
| | Sample_contact_institute | Charité (CCO)
| | Sample_contact_address | Charitéplatz 1
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 10117
| | Sample_contact_country | Germany
| | Sample_contact_web_link | http://www.charite.de/molbiol/bioinf/tumbiol/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152361/suppl/GSM152361.CEL.gz
| | Sample_relation | Reanalyzed by: GSE31519
| | Sample_series_id | GSE6596
| | Sample_series_id | GSE6772
| | Sample_data_row_count | 22283
| | |
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