Search results for the GEO ID: GSE6604  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM152804 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD001 PD001U95Av2
|
PD001, normal prostate tissue free of any pathological alteration from organ donor PD001
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 19
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152804
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152804/suppl/GSM152804.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152805 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD002 PD002U95Av2
|
PD002, normal prostate tissue free of any pathological alteration from organ donor PD002
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 41
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152805
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152805/suppl/GSM152805.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152806 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD003 PD003U95Av2
|
PD003, normal prostate tissue free of any pathological alteration from organ donor PD003
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 50
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152806
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152806/suppl/GSM152806.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152807 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD005 PD004U95Av2
|
PD005, normal prostate tissue free of any pathological alteration from organ donor PD005
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 19
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152807
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152807/suppl/GSM152807.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152808 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD006 PD005U95Av2
|
PD006, normal prostate tissue free of any pathological alteration from organ donor PD006
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 22
Race: African American
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152808
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152808/suppl/GSM152808.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152809 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD004 PD006U95Av2
|
PD004, normal prostate tissue free of any pathological alteration from organ donor PD004
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 20
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152809
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152809/suppl/GSM152809.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152810 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD007 PD007U95Av2
|
PD007, normal prostate tissue free of any pathological alteration from organ donor PD007
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 13
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152810
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152810/suppl/GSM152810.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152811 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD008 PD008U95Av2
|
PD008, normal prostate tissue free of any pathological alteration from organ donor PD008
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 47
Race: African American
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152811
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152811/suppl/GSM152811.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152812 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD009 PD009U95Av2
|
PD009, normal prostate tissue free of any pathological alteration from organ donor PD009
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 50
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152812
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152812/suppl/GSM152812.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152813 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD010 PD010U95Av2
|
PD010, normal prostate tissue free of any pathological alteration from organ donor PD010
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 46
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152813
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152813/suppl/GSM152813.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152814 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD011 PD011U95Av2
|
PD011, normal prostate tissue free of any pathological alteration from organ donor PD011
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 21
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152814
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152814/suppl/GSM152814.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152815 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD012 PD012U95Av2
|
PD012, normal prostate tissue free of any pathological alteration from organ donor PD012
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 16
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152815
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152815/suppl/GSM152815.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152816 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD013 PD013U95Av2
|
PD013, normal prostate tissue free of any pathological alteration from organ donor PD013
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 51
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152816
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152816/suppl/GSM152816.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152817 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD014 PD014U95Av2
|
PD014, normal prostate tissue free of any pathological alteration from organ donor PD014
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 24
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152817
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152817/suppl/GSM152817.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152818 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD015 PD015U95Av2
|
PD015, normal prostate tissue free of any pathological alteration from organ donor PD015
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 37
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152818
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152818/suppl/GSM152818.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152819 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD016 PD016U95Av2
|
PD016, normal prostate tissue free of any pathological alteration from organ donor PD016
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 24
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152819
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152819/suppl/GSM152819.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152820 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD019 PD019U95Av2
|
PD019, normal prostate tissue free of any pathological alteration from organ donor PD019
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 49
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152820
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152820/suppl/GSM152820.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152821 | GPL8300 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD020 PD020U95Av2
|
PD020, normal prostate tissue free of any pathological alteration from organ donor PD020
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 63
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152821
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95Av2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152821/suppl/GSM152821.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12625
| | |
|
GSM152822 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD001 PD001U95B
|
PD001, normal prostate tissue free of any pathological alteration from organ donor PD001
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 19
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152822
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152822/suppl/GSM152822.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152823 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD002 PD002U95B
|
PD002, normal prostate tissue free of any pathological alteration from organ donor PD002
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 41
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152823
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152823/suppl/GSM152823.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152824 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD003 PD003U95B
|
PD003, normal prostate tissue free of any pathological alteration from organ donor PD003
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 50
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152824
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152824/suppl/GSM152824.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152825 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD005 PD004U95B
|
PD005, normal prostate tissue free of any pathological alteration from organ donor PD005
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 19
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152825
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152825/suppl/GSM152825.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152826 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD006 PD005U95B
|
PD006, normal prostate tissue free of any pathological alteration from organ donor PD006
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 22
Race: African American
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152826
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152826/suppl/GSM152826.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152827 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD004 PD006U95B
|
PD004, normal prostate tissue free of any pathological alteration from organ donor PD004
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 20
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152827
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152827/suppl/GSM152827.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152828 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD007 PD007U95B
|
PD007, normal prostate tissue free of any pathological alteration from organ donor PD007
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 13
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152828
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152828/suppl/GSM152828.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152829 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD008 PD008U95B
|
PD008, normal prostate tissue free of any pathological alteration from organ donor PD008
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 47
Race: African American
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152829
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152829/suppl/GSM152829.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152830 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD009 PD009U95B
|
PD009, normal prostate tissue free of any pathological alteration from organ donor PD009
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 50
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152830
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152830/suppl/GSM152830.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152831 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD010 PD010U95B
|
PD010, normal prostate tissue free of any pathological alteration from organ donor PD010
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 46
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152831
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152831/suppl/GSM152831.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152832 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD011 PD011U95B
|
PD011, normal prostate tissue free of any pathological alteration from organ donor PD011
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 21
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152832
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152832/suppl/GSM152832.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152833 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD012 PD012U95B
|
PD012, normal prostate tissue free of any pathological alteration from organ donor PD012
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 16
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152833
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152833/suppl/GSM152833.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152834 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD013 PD013U95B
|
PD013, normal prostate tissue free of any pathological alteration from organ donor PD013
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 51
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152834
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152834/suppl/GSM152834.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152835 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD014 PD014U95B
|
PD014, normal prostate tissue free of any pathological alteration from organ donor PD014
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 24
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152835
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152835/suppl/GSM152835.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152836 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD015 PD015U95B
|
PD015, normal prostate tissue free of any pathological alteration from organ donor PD015
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 37
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152836
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152836/suppl/GSM152836.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152837 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD016 PD016U95B
|
PD016, normal prostate tissue free of any pathological alteration from organ donor PD016
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 24
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152837
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152837/suppl/GSM152837.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152838 | GPL92 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD019 PD019U95B
|
PD019, normal prostate tissue free of any pathological alteration from organ donor PD019
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 49
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152838
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95B array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL92
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152838/suppl/GSM152838.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12553
| | |
|
GSM152839 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD001 PD001U95C
|
PD001, normal prostate tissue free of any pathological alteration from organ donor PD001
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 19
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152839
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152839/suppl/GSM152839.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152840 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD002 PD002U95C
|
PD002, normal prostate tissue free of any pathological alteration from organ donor PD002
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 41
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152840
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152840/suppl/GSM152840.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152841 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD003 PD003U95C
|
PD003, normal prostate tissue free of any pathological alteration from organ donor PD003
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 50
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152841
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152841/suppl/GSM152841.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152842 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD005 PD004U95C
|
PD005, normal prostate tissue free of any pathological alteration from organ donor PD005
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 19
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152842
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152842/suppl/GSM152842.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152843 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD006 PD005U95C
|
PD006, normal prostate tissue free of any pathological alteration from organ donor PD006
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 22
Race: African American
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152843
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152843/suppl/GSM152843.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152844 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD004 PD006U95C
|
PD004, normal prostate tissue free of any pathological alteration from organ donor PD004
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 20
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152844
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152844/suppl/GSM152844.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152845 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD007 PD007U95C
|
PD007, normal prostate tissue free of any pathological alteration from organ donor PD007
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 13
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152845
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152845/suppl/GSM152845.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152846 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD008 PD008U95C
|
PD008, normal prostate tissue free of any pathological alteration from organ donor PD008
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 47
Race: African American
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152846
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152846/suppl/GSM152846.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152847 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD009 PD009U95C
|
PD009, normal prostate tissue free of any pathological alteration from organ donor PD009
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 50
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152847
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152847/suppl/GSM152847.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152848 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD010 PD010U95C
|
PD010, normal prostate tissue free of any pathological alteration from organ donor PD010
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 46
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152848
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152848/suppl/GSM152848.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152849 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD011 PD011U95C
|
PD011, normal prostate tissue free of any pathological alteration from organ donor PD011
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 21
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152849
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152849/suppl/GSM152849.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152850 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD012 PD012U95C
|
PD012, normal prostate tissue free of any pathological alteration from organ donor PD012
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 16
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152850
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152850/suppl/GSM152850.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152851 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD013 PD013U95C
|
PD013, normal prostate tissue free of any pathological alteration from organ donor PD013
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 51
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152851
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152851/suppl/GSM152851.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152852 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD014 PD014U95C
|
PD014, normal prostate tissue free of any pathological alteration from organ donor PD014
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 24
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152852
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152852/suppl/GSM152852.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152853 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD015 PD015U95C
|
PD015, normal prostate tissue free of any pathological alteration from organ donor PD015
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 37
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152853
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152853/suppl/GSM152853.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152854 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD016 PD016U95C
|
PD016, normal prostate tissue free of any pathological alteration from organ donor PD016
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 24
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152854
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152854/suppl/GSM152854.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
| | |
|
GSM152855 | GPL93 |
|
Normal prostate tissue free of any pathological alteration from organ donor PD019 PD019U95C
|
PD019, normal prostate tissue free of any pathological alteration from organ donor PD019
|
Tissue:normal prostate tissue free of any pathological alteration from brain-dead organ donor
Age: 49
Race: Caucasian
|
Gene expression data from normal prostate tissues free of any pathological alteration
|
| Sample_geo_accession | GSM152855
| | Sample_status | Public on Jan 16 2007
| | Sample_submission_date | Dec 22 2006
| | Sample_last_update_date | Jan 16 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Donor prostate tissues were obtained at the time of organ donation in brain-dead men. Samples were collected from peripheral zone of the prostate gland with at least 60% glandular components and free of any pathological alteration.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Qiagen Rneasy kit according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U95C array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 200.
| | Sample_platform_id | GPL93
| | Sample_contact_name | Federico,Alberto,Monzon
| | Sample_contact_email | famonzon@tmhs.org
| | Sample_contact_laboratory | Molecular Diagnostics
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Methodist Hospital
| | Sample_contact_address | 6565 Fannin St, MS205
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM152nnn/GSM152855/suppl/GSM152855.CEL.gz
| | Sample_series_id | GSE6604
| | Sample_series_id | GSE6919
| | Sample_data_row_count | 12646
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