Search results for the GEO ID: GSE6631  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM153813 | GPL8300 |
|
Normal mucosa 1
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153813
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153813/suppl/GSM153813.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153814 | GPL8300 |
|
Cancer 1
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153814
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153814/suppl/GSM153814.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153815 | GPL8300 |
|
Normal mucosa 2
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153815
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153815/suppl/GSM153815.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153816 | GPL8300 |
|
Cancer 2
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153816
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153816/suppl/GSM153816.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153817 | GPL8300 |
|
Normal mucosa 3
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153817
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153817/suppl/GSM153817.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153818 | GPL8300 |
|
Cancer 3
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153818
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153818/suppl/GSM153818.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153819 | GPL8300 |
|
Normal mucosa 4
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153819
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153819/suppl/GSM153819.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153820 | GPL8300 |
|
Cancer 4
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153820
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153820/suppl/GSM153820.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153821 | GPL8300 |
|
Normal mucosa 5
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153821
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153821/suppl/GSM153821.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153822 | GPL8300 |
|
Cancer 5
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153822
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153822/suppl/GSM153822.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153823 | GPL8300 |
|
Normal mucosa 6
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153823
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153823/suppl/GSM153823.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153824 | GPL8300 |
|
Cancer 6
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153824
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153824/suppl/GSM153824.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153825 | GPL8300 |
|
Normal mucosa 7
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153825
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153825/suppl/GSM153825.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153826 | GPL8300 |
|
Cancer 7
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153826
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153826/suppl/GSM153826.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153827 | GPL8300 |
|
Normal mucosa 8
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153827
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153827/suppl/GSM153827.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153828 | GPL8300 |
|
Cancer 8
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153828
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153828/suppl/GSM153828.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153829 | GPL8300 |
|
Normal mucosa 9
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153829
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153829/suppl/GSM153829.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153830 | GPL8300 |
|
Cancer 9
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153830
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153830/suppl/GSM153830.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153831 | GPL8300 |
|
Normal mucosa 10
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153831
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153831/suppl/GSM153831.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153832 | GPL8300 |
|
Cancer 10
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153832
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153832/suppl/GSM153832.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153833 | GPL8300 |
|
Normal mucosa 11
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153833
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153833/suppl/GSM153833.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153834 | GPL8300 |
|
Cancer 11
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153834
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153834/suppl/GSM153834.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153835 | GPL8300 |
|
Normal mucosa 12
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153835
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153835/suppl/GSM153835.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153836 | GPL8300 |
|
Cancer 12
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153836
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153836/suppl/GSM153836.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153837 | GPL8300 |
|
Normal mucosa 13
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153837
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153837/suppl/GSM153837.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153838 | GPL8300 |
|
Cancer 13
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153838
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153838/suppl/GSM153838.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153839 | GPL8300 |
|
Normal mucosa 14
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153839
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153839/suppl/GSM153839.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153840 | GPL8300 |
|
Cancer 14
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153840
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153840/suppl/GSM153840 .CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153841 | GPL8300 |
|
Normal mucosa 15
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153841
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153841/suppl/GSM153841.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153842 | GPL8300 |
|
Cancer 15
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153842
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153842/suppl/GSM153842.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153843 | GPL8300 |
|
Normal mucosa 16
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153843
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153843/suppl/GSM153843 .CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153844 | GPL8300 |
|
Cancer 16
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153844
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153844/suppl/GSM153844.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153845 | GPL8300 |
|
Normal mucosa 17
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153845
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153845/suppl/GSM153845.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153846 | GPL8300 |
|
Cancer 17
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153846
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153846/suppl/GSM153846.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153847 | GPL8300 |
|
Normal mucosa 18
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153847
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153847/suppl/GSM153847.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153848 | GPL8300 |
|
Cancer 18
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153848
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153848/suppl/GSM153848 .CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153849 | GPL8300 |
|
Normal mucosa 19
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153849
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153849/suppl/GSM153849.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153850 | GPL8300 |
|
Cancer 19
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153850
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153850/suppl/GSM153850.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153851 | GPL8300 |
|
Normal mucosa 20
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153851
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153851/suppl/GSM153851.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153852 | GPL8300 |
|
Cancer 20
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153852
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153852/suppl/GSM153852.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153853 | GPL8300 |
|
Normal mucosa 21
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153853
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153853/suppl/GSM153853 .CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153854 | GPL8300 |
|
Cancer 21
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153854
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153854/suppl/GSM153854.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153855 | GPL8300 |
|
Normal mucosa 22
|
human head and neck normal mucosa
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153855
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153855/suppl/GSM153855.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
| | |
|
GSM153856 | GPL8300 |
|
Cancer 22
|
human head and neck cancer
|
tissue sample from Bellevue Hospital, NY
|
Gene expression data of human normal head and neck mucosa.
|
| Sample_geo_accession | GSM153856
| | Sample_status | Public on Jan 20 2007
| | Sample_submission_date | Jan 03 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | normal tissue collected during removal of head and neck cancer, snap frozen with lq N2 in operating room, stored at -80 until RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from `10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix human U95A.v2 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings. CEL files were normalized with RMA and signal intensity of probe sets were computed with GeneTraffic v3.2 (Iobion Informatics).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Fang-An,,Chen
| | Sample_contact_email | chenf01@nyu.edu
| | Sample_contact_phone | 212-998-9564
| | Sample_contact_fax | 212-995-4087
| | Sample_contact_department | Oral and Maxillifacial surgery
| | Sample_contact_institute | New York Univ. College of Dentistry
| | Sample_contact_address | 345E 24th Street
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM153nnn/GSM153856/suppl/GSM153856.CEL.gz
| | Sample_series_id | GSE6631
| | Sample_data_row_count | 12625
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