Search results for the GEO ID: GSE6710  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM154768 | GPL96 |
|
Patient B, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: B
Sex: male
Age of patient: 34 years
Duration of psoriasis: 15 years
Body surface area: 6 percent
Overall erythema: severe
Induration: moderate (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from male patient, 34 years old, 15 years of psoriasis, severe erythema, moderate induration, mild scaling.
|
| Sample_geo_accession | GSM154768
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154768/suppl/GSM154768.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22269
| | |
|
GSM154769 | GPL96 |
|
Patient B, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: B
Sex: male
Age of patient: 34 years
Duration of psoriasis: 15 years
Body surface area: 6 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from male patient, 34 years old, 15 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154769
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154769/suppl/GSM154769.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22275
| | |
|
GSM154770 | GPL96 |
|
Patient C, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: C
Sex: male
Age of patient: 32 years
Duration of psoriasis: 17 years
Body surface area: 8 percent
Overall erythema: moderate
Induration: severe (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: moderate (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from male patient, 32 years old, 17 years of psoriasis, moderate erythema, severe induration, moderate scaling.
|
| Sample_geo_accession | GSM154770
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154770/suppl/GSM154770.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22279
| | |
|
GSM154771 | GPL96 |
|
Patient C, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: C
Sex: male
Age of patient: 32 years
Duration of psoriasis: 17 years
Body surface area: 8 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from male patient, 32 years old, 17 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154771
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154771/suppl/GSM154771.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22282
| | |
|
GSM154772 | GPL96 |
|
Patient D, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: D
Sex: male
Age of patient: 61 years
Duration of psoriasis: 21 years
Body surface area: 12 percent
Overall erythema: mild
Induration: moderate (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from male patient, 61 years old, 21 years of psoriasis, mild erythema, moderate induration, mild scaling.
|
| Sample_geo_accession | GSM154772
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154772/suppl/GSM154772.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22278
| | |
|
GSM154773 | GPL96 |
|
Patient D, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: D
Sex: male
Age of patient: 61 years
Duration of psoriasis: 21 years
Body surface area: 12 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from male patient, 61 years old, 21 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154773
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154773/suppl/GSM154773.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22283
| | |
|
GSM154774 | GPL96 |
|
Patient E, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: E
Sex: male
Age of patient: 51 years
Duration of psoriasis: 24 years
Body surface area: 8 percent
Overall erythema: mild
Induration: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from male patient, 51 years old, 24 years of psoriasis, mild erythema, mild induration, mild scaling.
|
| Sample_geo_accession | GSM154774
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154774/suppl/GSM154774.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22281
| | |
|
GSM154775 | GPL96 |
|
Patient E, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: E
Sex: male
Age of patient: 51 years
Duration of psoriasis: 24 years
Body surface area: 8 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from male patient, 51 years old, 24 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154775
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154775/suppl/GSM154775.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22265
| | |
|
GSM154776 | GPL96 |
|
Patient F, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: F
Sex: male
Age of patient: 47 years
Duration of psoriasis: 28 years
Body surface area: 15 percent
Overall erythema: moderate
Induration: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: moderate (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from male patient, 47 years old, 28 years of psoriasis, moderate erythema, mild induration, moderate scaling.
|
| Sample_geo_accession | GSM154776
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154776/suppl/GSM154776.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22278
| | |
|
GSM154777 | GPL96 |
|
Patient F, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: F
Sex: male
Age of patient: 47 years
Duration of psoriasis: 28 years
Body surface area: 15 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from male patient, 47 years old, 28 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154777
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154777/suppl/GSM154777.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22282
| | |
|
GSM154778 | GPL96 |
|
Patient G, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: G
Sex: male
Age of patient: 40 years
Duration of psoriasis: 19 years
Body surface area: 12 percent
Overall erythema: moderate
Induration: moderate (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: moderate (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from male patient, 40 years old, 19 years of psoriasis, moderate erythema, moderate induration, moderate scaling.
|
| Sample_geo_accession | GSM154778
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154778/suppl/GSM154778.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22282
| | |
|
GSM154779 | GPL96 |
|
Patient G, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: G
Sex: male
Age of patient: 40 years
Duration of psoriasis: 19 years
Body surface area: 12 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from male patient, 40 years old, 19 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154779
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154779/suppl/GSM154779.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22283
| | |
|
GSM154780 | GPL96 |
|
Patient J, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: J
Sex: female
Age of patient: 54 years
Duration of psoriasis: 48 years
Body surface area: 9 percent
Overall erythema: mild
Induration: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from female patient, 54 years old, 48 years of psoriasis, mild erythema, mild induration, mild scaling.
|
| Sample_geo_accession | GSM154780
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154780/suppl/GSM154780.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22276
| | |
|
GSM154781 | GPL96 |
|
Patient J, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: J
Sex: female
Age of patient: 54 years
Duration of psoriasis: 48 years
Body surface area: 9 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from female patient, 54 years old, 48 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154781
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154781/suppl/GSM154781.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22276
| | |
|
GSM154782 | GPL96 |
|
Patient L, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: L
Sex: male
Age of patient: 34 years
Duration of psoriasis: 22 years
Body surface area: 10 percent
Overall erythema: moderate
Induration: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: moderate (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from male patient, 34 years old, 22 years of psoriasis, moderate erythema, mild induration, moderate scaling.
|
| Sample_geo_accession | GSM154782
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154782/suppl/GSM154782.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22283
| | |
|
GSM154783 | GPL96 |
|
Patient L, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: L
Sex: male
Age of patient: 34 years
Duration of psoriasis: 22 years
Body surface area: 10 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from male patient, 34 years old, 22 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154783
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154783/suppl/GSM154783.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22283
| | |
|
GSM154784 | GPL96 |
|
Patient Z, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: Z
Sex: female
Age of patient: 42 years
Duration of psoriasis: 36 years
Body surface area: 5 percent
Overall erythema: mild
Induration: minimal (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from female patient, 42 years old, 36 years of psoriasis, mild erythema, minimal induration, mild scaling.
|
| Sample_geo_accession | GSM154784
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154784/suppl/GSM154784.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22268
| | |
|
GSM154785 | GPL96 |
|
Patient Z, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: Z
Sex: female
Age of patient: 42 years
Duration of psoriasis: 36 years
Body surface area: 5 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from female patient, 42 years old, 36 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154785
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154785/suppl/GSM154785.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22256
| | |
|
GSM154786 | GPL96 |
|
Patient N, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: N
Sex: male
Age of patient: 40 years
Duration of psoriasis: 20 years
Body surface area: 25 percent
Overall erythema: moderate
Induration: moderate (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from male patient, 40 years old, 20 years of psoriasis, moderate erythema, moderate induration, mild scaling.
|
| Sample_geo_accession | GSM154786
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154786/suppl/GSM154786.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22280
| | |
|
GSM154787 | GPL96 |
|
Patient N, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: N
Sex: male
Age of patient: 40 years
Duration of psoriasis: 20 years
Body surface area: 25 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from male patient, 40 years old, 20 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154787
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154787/suppl/GSM154787.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22280
| | |
|
GSM154788 | GPL96 |
|
Patient P, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: P
Sex: male
Age of patient: 76 years
Duration of psoriasis: 56 years
Body surface area: 15 percent
Overall erythema: mild
Induration: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: minimal (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from male patient, 76 years old, 56 years of psoriasis, mild erythema, mild induration, minimal scaling.
|
| Sample_geo_accession | GSM154788
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154788/suppl/GSM154788.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22276
| | |
|
GSM154789 | GPL96 |
|
Patient P, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: P
Sex: male
Age of patient: 76 years
Duration of psoriasis: 56 years
Body surface area: 15 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from male patient, 76 years old, 56 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154789
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154789/suppl/GSM154789.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22269
| | |
|
GSM154790 | GPL96 |
|
Patient R, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: R
Sex: male
Age of patient: 56 years
Duration of psoriasis: 16 years
Body surface area: 30 percent
Overall erythema: moderate
Induration: moderate (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: mild (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from male patient, 56 years old, 16 years of psoriasis, moderate erythema, moderate induration, mild scaling.
|
| Sample_geo_accession | GSM154790
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154790/suppl/GSM154790.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22281
| | |
|
GSM154791 | GPL96 |
|
Patient R, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: R
Sex: male
Age of patient: 56 years
Duration of psoriasis: 16 years
Body surface area: 30 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from male patient, 56 years old, 16 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154791
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154791/suppl/GSM154791.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22278
| | |
|
GSM154792 | GPL96 |
|
Patient W, lesional skin
|
Human skin biopsy from psoriatic patient (lesional skin)
|
Patient identifyier: W
Sex: male
Age of patient: 47 years
Duration of psoriasis: 27 years
Body surface area: 6 percent
Overall erythema: moderate
Induration: moderate (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: moderate (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (lesional) from male patient, 47 years old, 27 years of psoriasis, moderate erythema, moderate induration, moderate scaling.
|
| Sample_geo_accession | GSM154792
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 4 millimeter punch biopsy of lesional skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154792/suppl/GSM154792.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22273
| | |
|
GSM154793 | GPL96 |
|
Patient W, uninvolved skin
|
Human skin biopsy from psoriatic patient (uninvolved skin)
|
Patient identifyier: W
Sex: male
Age of patient: 47 years
Duration of psoriasis: 27 years
Body surface area: 6 percent
Overall erythema: clear
Induration: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
Scaling: clear (classified by the investigators according to the following six grades: clear - minimal - mild - moderate - severe - very severe)
|
Human skin biposy (uninvolved) from male patient, 47 years old, 27 years of psoriasis, clear erythema, clear induration, clear scaling.
|
| Sample_geo_accession | GSM154793
| | Sample_status | Public on Jan 12 2007
| | Sample_submission_date | Jan 11 2007
| | Sample_last_update_date | Jan 11 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Full thickness skin 5 millimeter punch biopsy of uninvolved skin
| | Sample_extract_protocol_ch1 | RNA was extracted using the Invisorb RNA Kit II (Invitek, Berlin, Germany) according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen, Hilden, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 2 microg total RNA using the BioArray-High-Yield-RNA-Transcript-Labeling-Kit (Enzo, Farmingdale, NY).
| | Sample_hyb_protocol | Following fragmentation, 12 microg of cRNA were hybridized to the Affymetrix HG-U133A chip according to the protocols provided by the manufacturer.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were condensed with MAS 5.0 using the Refiner software from Genedata, Basel, Switzerland using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Rainer,,Ternes
| | Sample_contact_institute | Bayer Schering Pharma
| | Sample_contact_address | Mullerstrasse
| | Sample_contact_city | Berlin
| | Sample_contact_zip/postal_code | 13353
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM154nnn/GSM154793/suppl/GSM154793.CEL.gz
| | Sample_series_id | GSE6710
| | Sample_data_row_count | 22270
| | |
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(2 groups will be compared at a time) |
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