Search results for the GEO ID: GSE6791 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM155645 | GPL570 |
|
CC010
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 35
Tumor Stage: II
|
Head and neck cancer
|
Sample_geo_accession | GSM155645
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155645/suppl/GSM155645.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155645/suppl/GSM155645.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155646 | GPL570 |
|
CC028
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 27
Tumor Stage: IB2
|
Head and neck cancer
|
Sample_geo_accession | GSM155646
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155646/suppl/GSM155646.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155646/suppl/GSM155646.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155647 | GPL570 |
|
CC029
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 40
Tumor Stage: IB
|
Head and neck cancer
|
Sample_geo_accession | GSM155647
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155647/suppl/GSM155647.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155647/suppl/GSM155647.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155648 | GPL570 |
|
CC034A
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 42
Tumor Stage: IB
|
Head and neck cancer
|
Sample_geo_accession | GSM155648
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155648/suppl/GSM155648.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155648/suppl/GSM155648.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155649 | GPL570 |
|
CC034B
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 44
Tumor Stage: II/III
|
Head and neck cancer
|
Sample_geo_accession | GSM155649
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155649/suppl/GSM155649.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155649/suppl/GSM155649.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155650 | GPL570 |
|
CC068
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 41
Tumor Stage: IB
|
Head and neck cancer
|
Sample_geo_accession | GSM155650
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155650/suppl/GSM155650.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155650/suppl/GSM155650.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155651 | GPL570 |
|
CC205
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 57
Tumor Stage: IB
|
Head and neck cancer
|
Sample_geo_accession | GSM155651
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155651/suppl/GSM155651.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155651/suppl/GSM155651.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155652 | GPL570 |
|
CC225
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 44
Tumor Stage: IV
|
Head and neck cancer
|
Sample_geo_accession | GSM155652
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155652/suppl/GSM155652.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155652/suppl/GSM155652.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155653 | GPL570 |
|
CC233
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 44
Tumor Stage: IB
|
Head and neck cancer
|
Sample_geo_accession | GSM155653
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155653/suppl/GSM155653.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155653/suppl/GSM155653.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155654 | GPL570 |
|
CC237
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 25
Tumor Stage: IB
|
Head and neck cancer
|
Sample_geo_accession | GSM155654
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155654/suppl/GSM155654.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155654/suppl/GSM155654.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155655 | GPL570 |
|
CC243
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 30
Tumor Stage: IB2
|
Head and neck cancer
|
Sample_geo_accession | GSM155655
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155655/suppl/GSM155655.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155655/suppl/GSM155655.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155656 | GPL570 |
|
CC300
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 47
Tumor Stage: IB2
|
Head and neck cancer
|
Sample_geo_accession | GSM155656
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155656/suppl/GSM155656.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155656/suppl/GSM155656.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155657 | GPL570 |
|
CC304
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 63
Tumor Stage: IB
|
Head and neck cancer
|
Sample_geo_accession | GSM155657
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155657/suppl/GSM155657.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155657/suppl/GSM155657.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155658 | GPL570 |
|
CC437
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 38
Tumor Stage: IB
|
Head and neck cancer
|
Sample_geo_accession | GSM155658
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155658/suppl/GSM155658.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155658/suppl/GSM155658.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155659 | GPL570 |
|
CC507
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 52
Tumor Stage: IIIB
|
Head and neck cancer
|
Sample_geo_accession | GSM155659
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155659/suppl/GSM155659.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155659/suppl/GSM155659.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155660 | GPL570 |
|
CC515
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 38
Tumor Stage: IB2
|
Head and neck cancer
|
Sample_geo_accession | GSM155660
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155660/suppl/GSM155660.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155660/suppl/GSM155660.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155661 | GPL570 |
|
CC519
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 48
Tumor Stage: IB2
|
Head and neck cancer
|
Sample_geo_accession | GSM155661
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155661/suppl/GSM155661.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155661/suppl/GSM155661.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155662 | GPL570 |
|
CC553
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 53
Tumor Stage: IB
|
Head and neck cancer
|
Sample_geo_accession | GSM155662
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155662/suppl/GSM155662.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155662/suppl/GSM155662.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155663 | GPL570 |
|
CC600
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 55
Tumor Stage: IB1
|
Head and neck cancer
|
Sample_geo_accession | GSM155663
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155663/suppl/GSM155663.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155663/suppl/GSM155663.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155664 | GPL570 |
|
CC701
|
Cervical cancer
|
Case: Cervical cancer
Anatomical sites: Cervix
gender: Female
age: 26
Tumor Stage: IB2
|
Head and neck cancer
|
Sample_geo_accession | GSM155664
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155664/suppl/GSM155664.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155664/suppl/GSM155664.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155665 | GPL570 |
|
CN001
|
Cervical normal
|
Case: Cervical normal
Anatomical sites: Cervix
gender: Female
age: 35
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155665
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155665/suppl/GSM155665.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155665/suppl/GSM155665.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155666 | GPL570 |
|
CN018
|
Cervical normal
|
Case: Cervical normal
Anatomical sites: Cervix
gender: Female
age: 44
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155666
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155666/suppl/GSM155666.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155666/suppl/GSM155666.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155667 | GPL570 |
|
CN022
|
Cervical normal
|
Case: Cervical normal
Anatomical sites: Cervix
gender: Female
age: 45
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155667
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155667/suppl/GSM155667.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155667/suppl/GSM155667.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155668 | GPL570 |
|
CN206
|
Cervical normal
|
Case: Cervical normal
Anatomical sites: Cervix
gender: Female
age: 66
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155668
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155668/suppl/GSM155668.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155668/suppl/GSM155668.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155669 | GPL570 |
|
CN243
|
Cervical normal
|
Case: Cervical normal
Anatomical sites: Cervix
gender: Female
age: 43
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155669
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155669/suppl/GSM155669.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155669/suppl/GSM155669.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155670 | GPL570 |
|
CN407
|
Cervical normal
|
Case: Cervical normal
Anatomical sites: Cervix
gender: Female
age: 56
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155670
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155670/suppl/GSM155670.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155670/suppl/GSM155670.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155671 | GPL570 |
|
CN530
|
Cervical normal
|
Case: Cervical normal
Anatomical sites: Cervix
gender: Female
age: 48
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155671
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155671/suppl/GSM155671.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155671/suppl/GSM155671.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155672 | GPL570 |
|
CN543
|
Cervical normal
|
Case: Cervical normal
Anatomical sites: Cervix
gender: Female
age: 43
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155672
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155672/suppl/GSM155672.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155672/suppl/GSM155672.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155673 | GPL570 |
|
HNC004
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Oral Cavity
gender: Male
age: 57
Tumor Stage: IV
|
Head and neck cancer
|
Sample_geo_accession | GSM155673
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155673/suppl/GSM155673.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155673/suppl/GSM155673.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155674 | GPL570 |
|
HNC001
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Oral Cavity
gender: Male
age: 64
Tumor Stage: IV
|
Head and neck cancer
|
Sample_geo_accession | GSM155674
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155674/suppl/GSM155674.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155674/suppl/GSM155674.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155675 | GPL570 |
|
HNC005
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Oropharynx
gender: Male
age: 44
Tumor Stage: IV
|
Head and neck cancer
|
Sample_geo_accession | GSM155675
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155675/suppl/GSM155675.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155675/suppl/GSM155675.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155676 | GPL570 |
|
HNC008
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Oropharynx
gender: Female
age: 57
Tumor Stage: III
|
Head and neck cancer
|
Sample_geo_accession | GSM155676
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155676/suppl/GSM155676.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155676/suppl/GSM155676.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155677 | GPL570 |
|
HNC009
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Oropharynx
gender: Female
age: 50
Tumor Stage: III
|
Head and neck cancer
|
Sample_geo_accession | GSM155677
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155677/suppl/GSM155677.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155677/suppl/GSM155677.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155678 | GPL570 |
|
HNC012
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Oropharynx
gender: Male
age: 59
Tumor Stage: IV
|
Head and neck cancer
|
Sample_geo_accession | GSM155678
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155678/suppl/GSM155678.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155678/suppl/GSM155678.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155679 | GPL570 |
|
HNC015
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: no data
gender: no data
age: no data
Tumor Stage: no data
|
Head and neck cancer
|
Sample_geo_accession | GSM155679
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155679/suppl/GSM155679.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155679/suppl/GSM155679.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155680 | GPL570 |
|
HNC017
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tonsil
gender: Male
age: 54
Tumor Stage: IV
|
Head and neck cancer
|
Sample_geo_accession | GSM155680
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155680/suppl/GSM155680.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155680/suppl/GSM155680.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155681 | GPL570 |
|
HNC018
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tonsil
gender: Female
age: 57
Tumor Stage: IV
|
Head and neck cancer
|
Sample_geo_accession | GSM155681
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155681/suppl/GSM155681.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155681/suppl/GSM155681.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155682 | GPL570 |
|
HNC2551
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Female
age: 85
Tumor Stage: I
|
Head and neck cancer
|
Sample_geo_accession | GSM155682
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155682/suppl/GSM155682.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155682/suppl/GSM155682.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155683 | GPL570 |
|
HNC2686
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Female
age: 68
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155683
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155683/suppl/GSM155683.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155683/suppl/GSM155683.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155684 | GPL570 |
|
HNC2714
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Male
age: 76
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155684
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155684/suppl/GSM155684.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155684/suppl/GSM155684.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155685 | GPL570 |
|
HNC2719
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Male
age: 58
Tumor Stage: I
|
Head and neck cancer
|
Sample_geo_accession | GSM155685
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155685/suppl/GSM155685.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155685/suppl/GSM155685.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155686 | GPL570 |
|
HNC2724
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Mouth
gender: Female
age: 58
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155686
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155686/suppl/GSM155686.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155686/suppl/GSM155686.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155687 | GPL570 |
|
HNC2725
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Male
age: 69
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155687
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155687/suppl/GSM155687.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155687/suppl/GSM155687.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155688 | GPL570 |
|
HNC2738
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Floor of mouth
gender: Male
age: 50
Tumor Stage: III
|
Head and neck cancer
|
Sample_geo_accession | GSM155688
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155688/suppl/GSM155688.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155688/suppl/GSM155688.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155689 | GPL570 |
|
HNC2743
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Female
age: 32
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155689
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155689/suppl/GSM155689.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155689/suppl/GSM155689.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155690 | GPL570 |
|
HNC2748
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Male
age: 65
Tumor Stage: III
|
Head and neck cancer
|
Sample_geo_accession | GSM155690
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155690/suppl/GSM155690.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155690/suppl/GSM155690.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155691 | GPL570 |
|
HNC2774
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Oropharynx
gender: Male
age: 66
Tumor Stage: II
|
Head and neck cancer
|
Sample_geo_accession | GSM155691
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155691/suppl/GSM155691.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155691/suppl/GSM155691.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155692 | GPL570 |
|
HNC2784
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Hypopharynx
gender: Male
age: 53
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155692
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155692/suppl/GSM155692.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155692/suppl/GSM155692.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155693 | GPL570 |
|
HNC2814
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Male
age: 54
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155693
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155693/suppl/GSM155693.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155693/suppl/GSM155693.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155694 | GPL570 |
|
HNC2816
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Floor of mouth
gender: Male
age: 57
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155694
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155694/suppl/GSM155694.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155694/suppl/GSM155694.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155695 | GPL570 |
|
HNC2836
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Male
age: 84
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155695
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155695/suppl/GSM155695.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155695/suppl/GSM155695.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155696 | GPL570 |
|
HNC2855
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Mouth
gender: Female
age: 69
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155696
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155696/suppl/GSM155696.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155696/suppl/GSM155696.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155697 | GPL570 |
|
HNC2857
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Larynx
gender: Male
age: 68
Tumor Stage: III
|
Head and neck cancer
|
Sample_geo_accession | GSM155697
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155697/suppl/GSM155697.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155697/suppl/GSM155697.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155698 | GPL570 |
|
HNC2885
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Female
age: 54
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155698
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155698/suppl/GSM155698.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155698/suppl/GSM155698.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155699 | GPL570 |
|
HNC2887
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Floor of mouth
gender: Male
age: 76
Tumor Stage: II
|
Head and neck cancer
|
Sample_geo_accession | GSM155699
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155699/suppl/GSM155699.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155699/suppl/GSM155699.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155700 | GPL570 |
|
HNC2907
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Larynx
gender: Male
age: 76
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155700
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155700/suppl/GSM155700.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155700/suppl/GSM155700.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155701 | GPL570 |
|
HNC2910
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Male
age: 67
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155701
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155701/suppl/GSM155701.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155701/suppl/GSM155701.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155702 | GPL570 |
|
HNC2914
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Pharynx
gender: Male
age: 53
Tumor Stage: II
|
Head and neck cancer
|
Sample_geo_accession | GSM155702
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155702/suppl/GSM155702.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155702/suppl/GSM155702.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155703 | GPL570 |
|
HNC2942
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Oropharynx
gender: Male
age: 56
Tumor Stage: III
|
Head and neck cancer
|
Sample_geo_accession | GSM155703
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155703/suppl/GSM155703.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155703/suppl/GSM155703.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155704 | GPL570 |
|
HNC2966
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Male
age: 55
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155704
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155704/suppl/GSM155704.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155704/suppl/GSM155704.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155705 | GPL570 |
|
HNC2967
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Floor of mouth
gender: No data
age: No data
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155705
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155705/suppl/GSM155705.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155705/suppl/GSM155705.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155706 | GPL570 |
|
HNC3003
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Female
age: 74
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155706
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155706/suppl/GSM155706.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155706/suppl/GSM155706.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155707 | GPL570 |
|
HNC3046
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Male
age: 56
Tumor Stage: II
|
Head and neck cancer
|
Sample_geo_accession | GSM155707
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155707/suppl/GSM155707.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155707/suppl/GSM155707.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155708 | GPL570 |
|
HNC3055
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tonsil
gender: Male
age: 74
Tumor Stage: IV
|
Head and neck cancer
|
Sample_geo_accession | GSM155708
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155708/suppl/GSM155708.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155708/suppl/GSM155708.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155709 | GPL570 |
|
HNC3092
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Tongue
gender: Male
age: 37
Tumor Stage: IV
|
Head and neck cancer
|
Sample_geo_accession | GSM155709
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155709/suppl/GSM155709.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155709/suppl/GSM155709.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155710 | GPL570 |
|
HNC3687
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: Floor of mouth
gender: Female
age: 54
Tumor Stage: No data
|
Head and neck cancer
|
Sample_geo_accession | GSM155710
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155710/suppl/GSM155710.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155710/suppl/GSM155710.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155711 | GPL570 |
|
HNCB1
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: tonsil
gender: Male
age: 50
Tumor Stage: IV
|
Head and neck cancer
|
Sample_geo_accession | GSM155711
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155711/suppl/GSM155711.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155711/suppl/GSM155711.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155712 | GPL570 |
|
HNCS1
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: hypopharynx
gender: Male
age: 56
Tumor Stage: III
|
Head and neck cancer
|
Sample_geo_accession | GSM155712
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155712/suppl/GSM155712.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155712/suppl/GSM155712.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155713 | GPL570 |
|
HNCS2
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: tonsil
gender: Male
age: 64
Tumor Stage: IV
|
Head and neck cancer
|
Sample_geo_accession | GSM155713
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155713/suppl/GSM155713.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155713/suppl/GSM155713.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155714 | GPL570 |
|
HNCS3
|
Head and neck cancer
|
Case: Head and neck cancer
Anatomical sites: tonsil
gender: Male
age: 62
Tumor Stage: III
|
Head and neck cancer
|
Sample_geo_accession | GSM155714
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155714/suppl/GSM155714.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155714/suppl/GSM155714.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155715 | GPL570 |
|
HNN013
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: tonsil
gender: Female
age: 20
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155715
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155715/suppl/GSM155715.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155715/suppl/GSM155715.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155716 | GPL570 |
|
HNN023
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: uvula and palate
gender: Female
age: 24
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155716
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155716/suppl/GSM155716.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155716/suppl/GSM155716.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155717 | GPL570 |
|
HNN039
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: tonsil
gender: Male
age: 66
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155717
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155717/suppl/GSM155717.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155717/suppl/GSM155717.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155718 | GPL570 |
|
HNN052
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: tonsil
gender: Male
age: 47
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155718
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155718/suppl/GSM155718.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155718/suppl/GSM155718.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155719 | GPL570 |
|
HNN053
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: tonsil
gender: Female
age: 18
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155719
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155719/suppl/GSM155719.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155719/suppl/GSM155719.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155720 | GPL570 |
|
ND004
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: Oral Cavity
gender: Female
age: 76
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155720
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155720/suppl/GSM155720.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155720/suppl/GSM155720.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155721 | GPL570 |
|
ND007
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: Oral Cavity
gender: Female
age: 77
Tumor Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155721
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155721/suppl/GSM155721.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155721/suppl/GSM155721.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155722 | GPL570 |
|
ND010
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: Oral Cavity
gender: Male
age: 55
Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155722
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155722/suppl/GSM155722.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155722/suppl/GSM155722.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155723 | GPL570 |
|
ND011
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: Oral Cavity
gender: Male
age: 62
Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155723
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155723/suppl/GSM155723.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155723/suppl/GSM155723.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155724 | GPL570 |
|
ND012
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: Oral Cavity
gender: Female
age: 63
Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155724
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155724/suppl/GSM155724.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155724/suppl/GSM155724.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155725 | GPL570 |
|
ND014
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: Oral Cavity
gender: Female
age: 88
Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155725
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155725/suppl/GSM155725.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155725/suppl/GSM155725.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155726 | GPL570 |
|
ND015
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: Oral Cavity
gender: Female
age: 54
Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155726
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155726/suppl/GSM155726.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155726/suppl/GSM155726.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155727 | GPL570 |
|
ND017
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: Oral Cavity
gender: Male
age: 84
Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155727
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155727/suppl/GSM155727.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155727/suppl/GSM155727.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
GSM155728 | GPL570 |
|
ND018
|
Head and neck normal
|
Case: Head and neck normal
Anatomical sites: Oral Cavity
gender: Female
age: 81
Stage: -
|
Head and neck cancer
|
Sample_geo_accession | GSM155728
| Sample_status | Public on May 15 2007
| Sample_submission_date | Jan 17 2007
| Sample_last_update_date | Apr 24 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Samples were fresh frozen in liquid nitrogen and collected with patients' consent under approval of the Institutional Review Boards.
| Sample_growth_protocol_ch1 | Sample was harvested without further growth
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Enzo BioArray HighYield RNA Transcript Labeling Kit according to manufacturer's instructions.
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station
| Sample_scan_protocol | GeneChips were scanned using the scanner of the Affymetrix GeneChip Analysis System.
| Sample_data_processing | The data were analyzed with the Bioconductor using Affymetrix package version 1.10.0. Probeset summary measures were computed by robust multiarray averaging applied to the combined set of 84 microarrays.
| Sample_platform_id | GPL570
| Sample_contact_name | Paul,,Ahlquist
| Sample_contact_email | ahlquist@wisc.edu
| Sample_contact_department | Oncology
| Sample_contact_institute | University of Wisconsin-Madison
| Sample_contact_address | 1525 Linden Dr.
| Sample_contact_city | Madison
| Sample_contact_state | WI
| Sample_contact_zip/postal_code | 53706
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155728/suppl/GSM155728.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM155nnn/GSM155728/suppl/GSM155728.EXP.gz
| Sample_series_id | GSE6791
| Sample_data_row_count | 54675
| |
|
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