Search results for the GEO ID: GSE6920 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM159403 | GPL570 |
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Patient 5 T-ALL cells propagated in NOD/SCID mice and harvested from bone marrow; first of two replicates.
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Human T-ALL cells from patient 5 propagated in NOD/SCID mice; T-ALL developed after gene therapy for SCID due to insertional mutagenesis of the LMO2 locus; first of two replicates.
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Primary human T-ALL cells derived from patient 5 which developed leukemia 3 years after gene therapy for SCID due to insertional activation of LMO2; T-ALL cells were passaged in NOD/SCID mouse; first of two replicates
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Gene expression data from primary T-ALL cells of patient 5 propagated in NOD/SCID mice and isolated from bone marrow; first of two replicates
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Sample_geo_accession | GSM159403
| Sample_status | Public on Dec 27 2008
| Sample_submission_date | Jan 30 2007
| Sample_last_update_date | Dec 28 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using TRIZOL
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual.
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual.
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Gerlinde,,Layh-Schmitt
| Sample_contact_email | gerlinde.layh-schmitt@cchmc.org
| Sample_contact_laboratory | Molecular and Gene Therapy
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159403/suppl/GSM159403.CEL.gz
| Sample_series_id | GSE6920
| Sample_data_row_count | 54675
| |
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GSM159404 | GPL570 |
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Patient 5 T-ALL cells propagated in NOD/SCID mice and harvested from bone marrow; second of two replicates.
|
Human T-ALL cells from patient 5 propagated in NOD/SCID mice; T-ALL developed after gene therapy for SCID due to insertional mutagenesis of the LMO2 locus;second of two replicates.
|
Primary human T-ALL cells derived from patient 5 which developed leukemia 3 years after gene therapy for SCID due to insertional activation of LMO2; T-ALL cells were passaged in NOD/SCID mouse; second of two replicates
|
Gene expression data from primary T-ALL cells of patient 5 propagated in NOD/SCID mice and isolated from bone marrow;second of two replicates
|
Sample_geo_accession | GSM159404
| Sample_status | Public on Dec 27 2008
| Sample_submission_date | Jan 30 2007
| Sample_last_update_date | Dec 28 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using TRIZOL
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual.
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual.
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Gerlinde,,Layh-Schmitt
| Sample_contact_email | gerlinde.layh-schmitt@cchmc.org
| Sample_contact_laboratory | Molecular and Gene Therapy
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159404/suppl/GSM159404.CEL.gz
| Sample_series_id | GSE6920
| Sample_data_row_count | 54675
| |
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GSM159405 | GPL570 |
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CD8 cells isolated from mixed normal donors; first of two replicates.
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CD8 cells isolated from normal donor blood, first of two replicates.
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Normal donor CD8 cells; first of two replicates
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Gene expression data from CD8 cells of mixed normal donors; first of two replicates
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Sample_geo_accession | GSM159405
| Sample_status | Public on Dec 27 2008
| Sample_submission_date | Jan 30 2007
| Sample_last_update_date | Dec 28 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using TRIZOL
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual.
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual.
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Gerlinde,,Layh-Schmitt
| Sample_contact_email | gerlinde.layh-schmitt@cchmc.org
| Sample_contact_laboratory | Molecular and Gene Therapy
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159405/suppl/GSM159405.CEL.gz
| Sample_series_id | GSE6920
| Sample_data_row_count | 54675
| |
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GSM159406 | GPL570 |
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CD8 cells isolated from mixed normal donors; second of two replicates.
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CD8 cells isolated from normal donor blood, second of two replicates.
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Normal donor CD8 cells; second of two replicates
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Gene expression data from CD8 cells of mixed normal donors; second of two replicates
|
Sample_geo_accession | GSM159406
| Sample_status | Public on Dec 27 2008
| Sample_submission_date | Jan 30 2007
| Sample_last_update_date | Dec 28 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using TRIZOL
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual.
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual.
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Gerlinde,,Layh-Schmitt
| Sample_contact_email | gerlinde.layh-schmitt@cchmc.org
| Sample_contact_laboratory | Molecular and Gene Therapy
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159406/suppl/GSM159406.CEL.gz
| Sample_series_id | GSE6920
| Sample_data_row_count | 54675
| |
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GSM159407 | GPL570 |
|
Primary T-ALL cells isolated from patient 5; first of two replicates.
|
Primary human T-ALL cells from patient 5; T-ALL developed after gene therapy for SCID due to insertional mutagenesis of the LMO2 locus;first of two replicates.
|
Primary human T-ALL cells derived from patient 5 which developed leukemia 3 years after gene therapy for SCID due to insertional activation of LMO2; first of two replicates
|
Gene expression data from primary patient 5 T-ALL cells; first of two replicates
|
Sample_geo_accession | GSM159407
| Sample_status | Public on Dec 27 2008
| Sample_submission_date | Jan 30 2007
| Sample_last_update_date | Dec 28 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using TRIZOL
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual.
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual.
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Gerlinde,,Layh-Schmitt
| Sample_contact_email | gerlinde.layh-schmitt@cchmc.org
| Sample_contact_laboratory | Molecular and Gene Therapy
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159407/suppl/GSM159407.CEL.gz
| Sample_series_id | GSE6920
| Sample_data_row_count | 54675
| |
|
GSM159408 | GPL570 |
|
Primary T-ALL cells isolated from patient 5; second of two replicates.
|
Primary human T-ALL cells from patient 5; T-ALL developed after gene therapy for SCID due to insertional mutagenesis of the LMO2 locus; second of two replicates.
|
Primary human T-ALL cells derived from patient 5 which developed leukemia 3 years after gene therapy for SCID due to insertional activation of LMO2; T-ALL cells were passaged in NOD/SCID mouse; second of two replicates
|
Gene expression data from primary patient 5 T-ALL cells; second of two replicates
|
Sample_geo_accession | GSM159408
| Sample_status | Public on Dec 27 2008
| Sample_submission_date | Jan 30 2007
| Sample_last_update_date | Dec 28 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using TRIZOL
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual.
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual.
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with RMA
| Sample_platform_id | GPL570
| Sample_contact_name | Gerlinde,,Layh-Schmitt
| Sample_contact_email | gerlinde.layh-schmitt@cchmc.org
| Sample_contact_laboratory | Molecular and Gene Therapy
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159408/suppl/GSM159408.CEL.gz
| Sample_series_id | GSE6920
| Sample_data_row_count | 54675
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