Search results for the GEO ID: GSE6943 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM160089 | GPL341 |
|
Diaphragm 1
|
Diaphragm
|
Young adult SD rat
|
Diaphragm 1
|
Sample_geo_accession | GSM160089
| Sample_status | Public on Jan 24 2008
| Sample_submission_date | Feb 02 2007
| Sample_last_update_date | Jul 31 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard Affy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affy
| Sample_hyb_protocol | Standard Affy
| Sample_scan_protocol | Standard Affy
| Sample_data_processing | GCOS
| Sample_platform_id | GPL341
| Sample_contact_name | Erik,--,van Lunteren
| Sample_contact_email | exv4@cwru.edu
| Sample_contact_phone | 216-791-3800
| Sample_contact_department | Pulmonary 111J(W)
| Sample_contact_institute | Cleveland VA Medical Center
| Sample_contact_address | 10701 East Boulevard
| Sample_contact_city | Cleveland
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 44106
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160089/suppl/GSM160089.CEL.gz
| Sample_series_id | GSE6943
| Sample_series_id | GSE12282
| Sample_data_row_count | 15923
| |
|
GSM160090 | GPL341 |
|
Diaphragm 2
|
Diaphragm
|
Young adult SD rat
|
Diaphragm 2
|
Sample_geo_accession | GSM160090
| Sample_status | Public on Jan 24 2008
| Sample_submission_date | Feb 02 2007
| Sample_last_update_date | Jul 31 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard Affy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affy
| Sample_hyb_protocol | Standard Affy
| Sample_scan_protocol | Standard Affy
| Sample_data_processing | GCOS
| Sample_platform_id | GPL341
| Sample_contact_name | Erik,--,van Lunteren
| Sample_contact_email | exv4@cwru.edu
| Sample_contact_phone | 216-791-3800
| Sample_contact_department | Pulmonary 111J(W)
| Sample_contact_institute | Cleveland VA Medical Center
| Sample_contact_address | 10701 East Boulevard
| Sample_contact_city | Cleveland
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 44106
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160090/suppl/GSM160090.CEL.gz
| Sample_series_id | GSE6943
| Sample_series_id | GSE12282
| Sample_data_row_count | 15923
| |
|
GSM160091 | GPL341 |
|
Diaphragm 3
|
Diaphragm
|
Young adult SD rat
|
Diaphragm 3
|
Sample_geo_accession | GSM160091
| Sample_status | Public on Jan 24 2008
| Sample_submission_date | Feb 02 2007
| Sample_last_update_date | Jul 31 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard Affy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affy
| Sample_hyb_protocol | Standard Affy
| Sample_scan_protocol | Standard Affy
| Sample_data_processing | GCOS
| Sample_platform_id | GPL341
| Sample_contact_name | Erik,--,van Lunteren
| Sample_contact_email | exv4@cwru.edu
| Sample_contact_phone | 216-791-3800
| Sample_contact_department | Pulmonary 111J(W)
| Sample_contact_institute | Cleveland VA Medical Center
| Sample_contact_address | 10701 East Boulevard
| Sample_contact_city | Cleveland
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 44106
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160091/suppl/GSM160091.CEL.gz
| Sample_series_id | GSE6943
| Sample_series_id | GSE12282
| Sample_data_row_count | 15923
| |
|
GSM160092 | GPL341 |
|
Diaphragm 4
|
Diaphragm
|
Young adult SD rat
|
Diaphragm 4
|
Sample_geo_accession | GSM160092
| Sample_status | Public on Jan 24 2008
| Sample_submission_date | Feb 02 2007
| Sample_last_update_date | Jul 31 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard Affy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affy
| Sample_hyb_protocol | Standard Affy
| Sample_scan_protocol | Standard Affy
| Sample_data_processing | GCOS
| Sample_platform_id | GPL341
| Sample_contact_name | Erik,--,van Lunteren
| Sample_contact_email | exv4@cwru.edu
| Sample_contact_phone | 216-791-3800
| Sample_contact_department | Pulmonary 111J(W)
| Sample_contact_institute | Cleveland VA Medical Center
| Sample_contact_address | 10701 East Boulevard
| Sample_contact_city | Cleveland
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 44106
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160092/suppl/GSM160092.CEL.gz
| Sample_series_id | GSE6943
| Sample_series_id | GSE12282
| Sample_data_row_count | 15923
| |
|
GSM160093 | GPL341 |
|
Diaphragm 5
|
Diaphragm
|
Young adult SD rat
|
Diaphragm 5
|
Sample_geo_accession | GSM160093
| Sample_status | Public on Jan 24 2008
| Sample_submission_date | Feb 02 2007
| Sample_last_update_date | Jul 31 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard Affy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affy
| Sample_hyb_protocol | Standard Affy
| Sample_scan_protocol | Standard Affy
| Sample_data_processing | GCOS
| Sample_platform_id | GPL341
| Sample_contact_name | Erik,--,van Lunteren
| Sample_contact_email | exv4@cwru.edu
| Sample_contact_phone | 216-791-3800
| Sample_contact_department | Pulmonary 111J(W)
| Sample_contact_institute | Cleveland VA Medical Center
| Sample_contact_address | 10701 East Boulevard
| Sample_contact_city | Cleveland
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 44106
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160093/suppl/GSM160093.CEL.gz
| Sample_series_id | GSE6943
| Sample_series_id | GSE12282
| Sample_data_row_count | 15923
| |
|
GSM160094 | GPL341 |
|
Diaphragm 6
|
Diaphragm
|
Young adult SD rat
|
Diaphragm 6
|
Sample_geo_accession | GSM160094
| Sample_status | Public on Jan 24 2008
| Sample_submission_date | Feb 02 2007
| Sample_last_update_date | Jul 31 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard Affy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affy
| Sample_hyb_protocol | Standard Affy
| Sample_scan_protocol | Standard Affy
| Sample_data_processing | GCOS
| Sample_platform_id | GPL341
| Sample_contact_name | Erik,--,van Lunteren
| Sample_contact_email | exv4@cwru.edu
| Sample_contact_phone | 216-791-3800
| Sample_contact_department | Pulmonary 111J(W)
| Sample_contact_institute | Cleveland VA Medical Center
| Sample_contact_address | 10701 East Boulevard
| Sample_contact_city | Cleveland
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 44106
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160094/suppl/GSM160094.CEL.gz
| Sample_series_id | GSE6943
| Sample_series_id | GSE12282
| Sample_data_row_count | 15923
| |
|
GSM160095 | GPL341 |
|
Heart 1
|
Heart (left vent)
|
Young adult SD rat
|
Heart 1
|
Sample_geo_accession | GSM160095
| Sample_status | Public on Jan 24 2008
| Sample_submission_date | Feb 02 2007
| Sample_last_update_date | Jan 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard Affy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affy
| Sample_hyb_protocol | Standard Affy
| Sample_scan_protocol | Standard Affy
| Sample_data_processing | GCOS
| Sample_platform_id | GPL341
| Sample_contact_name | Erik,--,van Lunteren
| Sample_contact_email | exv4@cwru.edu
| Sample_contact_phone | 216-791-3800
| Sample_contact_department | Pulmonary 111J(W)
| Sample_contact_institute | Cleveland VA Medical Center
| Sample_contact_address | 10701 East Boulevard
| Sample_contact_city | Cleveland
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 44106
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160095/suppl/GSM160095.CEL.gz
| Sample_series_id | GSE6943
| Sample_data_row_count | 15923
| |
|
GSM160096 | GPL341 |
|
Heart 2
|
Heart (left vent)
|
Young adult SD rat
|
Heart 2
|
Sample_geo_accession | GSM160096
| Sample_status | Public on Jan 24 2008
| Sample_submission_date | Feb 02 2007
| Sample_last_update_date | Jan 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard Affy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affy
| Sample_hyb_protocol | Standard Affy
| Sample_scan_protocol | Standard Affy
| Sample_data_processing | GCOS
| Sample_platform_id | GPL341
| Sample_contact_name | Erik,--,van Lunteren
| Sample_contact_email | exv4@cwru.edu
| Sample_contact_phone | 216-791-3800
| Sample_contact_department | Pulmonary 111J(W)
| Sample_contact_institute | Cleveland VA Medical Center
| Sample_contact_address | 10701 East Boulevard
| Sample_contact_city | Cleveland
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 44106
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160096/suppl/GSM160096.CEL.gz
| Sample_series_id | GSE6943
| Sample_data_row_count | 15923
| |
|
GSM160098 | GPL341 |
|
Heart 4
|
Heart (left vent)
|
Young adult SD rat
|
Heart 4
|
Sample_geo_accession | GSM160098
| Sample_status | Public on Jan 24 2008
| Sample_submission_date | Feb 02 2007
| Sample_last_update_date | Jan 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard Affy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affy
| Sample_hyb_protocol | Standard Affy
| Sample_scan_protocol | Standard Affy
| Sample_data_processing | GCOS
| Sample_platform_id | GPL341
| Sample_contact_name | Erik,--,van Lunteren
| Sample_contact_email | exv4@cwru.edu
| Sample_contact_phone | 216-791-3800
| Sample_contact_department | Pulmonary 111J(W)
| Sample_contact_institute | Cleveland VA Medical Center
| Sample_contact_address | 10701 East Boulevard
| Sample_contact_city | Cleveland
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 44106
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160098/suppl/GSM160098.CEL.gz
| Sample_series_id | GSE6943
| Sample_data_row_count | 15923
| |
|
GSM160099 | GPL341 |
|
Heart 5
|
Heart (left vent)
|
Young adult SD rat
|
Heart 5
|
Sample_geo_accession | GSM160099
| Sample_status | Public on Jan 24 2008
| Sample_submission_date | Feb 02 2007
| Sample_last_update_date | Jan 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard Affy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affy
| Sample_hyb_protocol | Standard Affy
| Sample_scan_protocol | Standard Affy
| Sample_data_processing | GCOS
| Sample_platform_id | GPL341
| Sample_contact_name | Erik,--,van Lunteren
| Sample_contact_email | exv4@cwru.edu
| Sample_contact_phone | 216-791-3800
| Sample_contact_department | Pulmonary 111J(W)
| Sample_contact_institute | Cleveland VA Medical Center
| Sample_contact_address | 10701 East Boulevard
| Sample_contact_city | Cleveland
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 44106
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160099/suppl/GSM160099.CEL.gz
| Sample_series_id | GSE6943
| Sample_data_row_count | 15923
| |
|
GSM160100 | GPL341 |
|
Heart 6
|
Heart (left vent)
|
Young adult SD rat
|
Heart 6
|
Sample_geo_accession | GSM160100
| Sample_status | Public on Jan 24 2008
| Sample_submission_date | Feb 02 2007
| Sample_last_update_date | Jan 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Standard Affy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affy
| Sample_hyb_protocol | Standard Affy
| Sample_scan_protocol | Standard Affy
| Sample_data_processing | GCOS
| Sample_platform_id | GPL341
| Sample_contact_name | Erik,--,van Lunteren
| Sample_contact_email | exv4@cwru.edu
| Sample_contact_phone | 216-791-3800
| Sample_contact_department | Pulmonary 111J(W)
| Sample_contact_institute | Cleveland VA Medical Center
| Sample_contact_address | 10701 East Boulevard
| Sample_contact_city | Cleveland
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 44106
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160100/suppl/GSM160100.CEL.gz
| Sample_series_id | GSE6943
| Sample_data_row_count | 15923
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
|
Filter results by number of probes |
|
|