Search results for the GEO ID: GSE6961  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM160497 | GPL339 |
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TTE3 cells cultured at nonpermissive temperature for 0 h-1
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Mouse testicular Sertoli cell line TTE3
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Mouse testicular Sertoli cell line TTE3
|
A mouse testicular Sertoli cell line, TTE3, derived from transgenic mice harboring a temperature-sensitive simian virus 40 large T-antigen was used. TTE3 cells were cultured at nonpermissive temperature 39°C for 0 h.
|
| Sample_geo_accession | GSM160497
| | Sample_status | Public on Feb 23 2007
| | Sample_submission_date | Feb 06 2007
| | Sample_last_update_date | Feb 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the cells using an RNeasy Total RNA Extraction Kit (Qiagen K.K., Tokyo, Japan). Then, RNA samples were treated with RNase-free DNase.
| | Sample_label_ch1 | phycoerythrin
| | Sample_label_protocol_ch1 | 5 μg of total RNA was used to synthesize double-strand cDNA with a GeneChip® Expression 3’-Amplification Reagents One-Cycle cDNA Synthesis Kit (Affymetrix). Biotin-labeled cRNA was then synthesized from the cDNA using GeneChip® Expression 3’-Amplification Reagents for IVT Labeling (Affymetrix).
| | Sample_hyb_protocol | After fragmentation, the biotinylated cRNA was hybridized to arrays at 45°C for 16 h.
| | Sample_scan_protocol | The arrays were washed, stained with streptavidin-phycoerythrin and scanned with a probe array scanner (Affymetrix).
| | Sample_data_processing | GeneChip Analysis Suite
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yoshiaki,,Tabuchi
| | Sample_contact_email | ytabu@cts.u-toyama.ac.jp
| | Sample_contact_laboratory | Division of Molecular Genetics Research
| | Sample_contact_department | Life Science Research Center
| | Sample_contact_institute | University of Toyama
| | Sample_contact_address | 2630 Sugitani
| | Sample_contact_city | Toyama
| | Sample_contact_state | Toyama
| | Sample_contact_zip/postal_code | 930-0194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160497/suppl/GSM160497.CEL.gz
| | Sample_series_id | GSE6961
| | Sample_data_row_count | 22690
| | |
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GSM160500 | GPL339 |
|
TTE3 cells cultured at nonpermissive temperature for 0 h-2
|
Mouse testicular Sertoli cell line TTE3
|
Mouse testicular Sertoli cell line TTE3
|
A mouse testicular Sertoli cell line, TTE3, derived from transgenic mice harboring a temperature-sensitive simian virus 40 large T-antigen was used. TTE3 cells were cultured at nonpermissive temperature 39°C for 0 h.
|
| Sample_geo_accession | GSM160500
| | Sample_status | Public on Feb 23 2007
| | Sample_submission_date | Feb 06 2007
| | Sample_last_update_date | Feb 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the cells using an RNeasy Total RNA Extraction Kit (Qiagen K.K., Tokyo, Japan). Then, RNA samples were treated with RNase-free DNase.
| | Sample_label_ch1 | phycoerythrin
| | Sample_label_protocol_ch1 | 5 μg of total RNA was used to synthesize double-strand cDNA with a GeneChip® Expression 3’-Amplification Reagents One-Cycle cDNA Synthesis Kit (Affymetrix). Biotin-labeled cRNA was then synthesized from the cDNA using GeneChip® Expression 3’-Amplification Reagents for IVT Labeling (Affymetrix).
| | Sample_hyb_protocol | After fragmentation, the biotinylated cRNA was hybridized to arrays at 45°C for 16 h.
| | Sample_scan_protocol | The arrays were washed, stained with streptavidin-phycoerythrin and scanned with a probe array scanner (Affymetrix).
| | Sample_data_processing | GeneChip Analysis Suite
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yoshiaki,,Tabuchi
| | Sample_contact_email | ytabu@cts.u-toyama.ac.jp
| | Sample_contact_laboratory | Division of Molecular Genetics Research
| | Sample_contact_department | Life Science Research Center
| | Sample_contact_institute | University of Toyama
| | Sample_contact_address | 2630 Sugitani
| | Sample_contact_city | Toyama
| | Sample_contact_state | Toyama
| | Sample_contact_zip/postal_code | 930-0194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160500/suppl/GSM160500.CEL.gz
| | Sample_series_id | GSE6961
| | Sample_data_row_count | 22690
| | |
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GSM160502 | GPL339 |
|
TTE3 cells cultured at nonpermissive temperature for 6 h-1
|
Mouse testicular Sertoli cell line TTE3
|
Mouse testicular Sertoli cell line TTE3
|
A mouse testicular Sertoli cell line, TTE3, derived from transgenic mice harboring a temperature-sensitive simian virus 40 large T-antigen was used. TTE3 cells were cultured at nonpermissive temperature 39°C for 6 h.
|
| Sample_geo_accession | GSM160502
| | Sample_status | Public on Feb 23 2007
| | Sample_submission_date | Feb 06 2007
| | Sample_last_update_date | Feb 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the cells using an RNeasy Total RNA Extraction Kit (Qiagen K.K., Tokyo, Japan). Then, RNA samples were treated with RNase-free DNase.
| | Sample_label_ch1 | phycoerythrin
| | Sample_label_protocol_ch1 | 5 μg of total RNA was used to synthesize double-strand cDNA with a GeneChip® Expression 3’-Amplification Reagents One-Cycle cDNA Synthesis Kit (Affymetrix). Biotin-labeled cRNA was then synthesized from the cDNA using GeneChip® Expression 3’-Amplification Reagents for IVT Labeling (Affymetrix).
| | Sample_hyb_protocol | After fragmentation, the biotinylated cRNA was hybridized to arrays at 45°C for 16 h.
| | Sample_scan_protocol | The arrays were washed, stained with streptavidin-phycoerythrin and scanned with a probe array scanner (Affymetrix).
| | Sample_data_processing | GeneChip Analysis Suite
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yoshiaki,,Tabuchi
| | Sample_contact_email | ytabu@cts.u-toyama.ac.jp
| | Sample_contact_laboratory | Division of Molecular Genetics Research
| | Sample_contact_department | Life Science Research Center
| | Sample_contact_institute | University of Toyama
| | Sample_contact_address | 2630 Sugitani
| | Sample_contact_city | Toyama
| | Sample_contact_state | Toyama
| | Sample_contact_zip/postal_code | 930-0194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160502/suppl/GSM160502.CEL.gz
| | Sample_series_id | GSE6961
| | Sample_data_row_count | 22690
| | |
|
GSM160503 | GPL339 |
|
TTE3 cells cultured at nonpermissive temperature for 6 h-2
|
Mouse testicular Sertoli cell line TTE3
|
Mouse testicular Sertoli cell line TTE3
|
A mouse testicular Sertoli cell line, TTE3, derived from transgenic mice harboring a temperature-sensitive simian virus 40 large T-antigen was used. TTE3 cells were cultured at nonpermissive temperature 39°C for 6 h.
|
| Sample_geo_accession | GSM160503
| | Sample_status | Public on Feb 23 2007
| | Sample_submission_date | Feb 06 2007
| | Sample_last_update_date | Feb 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the cells using an RNeasy Total RNA Extraction Kit (Qiagen K.K., Tokyo, Japan). Then, RNA samples were treated with RNase-free DNase.
| | Sample_label_ch1 | phycoerythrin
| | Sample_label_protocol_ch1 | 5 μg of total RNA was used to synthesize double-strand cDNA with a GeneChip® Expression 3’-Amplification Reagents One-Cycle cDNA Synthesis Kit (Affymetrix). Biotin-labeled cRNA was then synthesized from the cDNA using GeneChip® Expression 3’-Amplification Reagents for IVT Labeling (Affymetrix).
| | Sample_hyb_protocol | After fragmentation, the biotinylated cRNA was hybridized to arrays at 45°C for 16 h.
| | Sample_scan_protocol | The arrays were washed, stained with streptavidin-phycoerythrin and scanned with a probe array scanner (Affymetrix).
| | Sample_data_processing | GeneChip Analysis Suite
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yoshiaki,,Tabuchi
| | Sample_contact_email | ytabu@cts.u-toyama.ac.jp
| | Sample_contact_laboratory | Division of Molecular Genetics Research
| | Sample_contact_department | Life Science Research Center
| | Sample_contact_institute | University of Toyama
| | Sample_contact_address | 2630 Sugitani
| | Sample_contact_city | Toyama
| | Sample_contact_state | Toyama
| | Sample_contact_zip/postal_code | 930-0194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160503/suppl/GSM160503.CEL.gz
| | Sample_series_id | GSE6961
| | Sample_data_row_count | 22690
| | |
|
GSM160505 | GPL339 |
|
TTE3 cells cultured at nonpermissive temperature for 12 h-1
|
Mouse testicular Sertoli cell line TTE3
|
Mouse testicular Sertoli cell line TTE3
|
A mouse testicular Sertoli cell line, TTE3, derived from transgenic mice harboring a temperature-sensitive simian virus 40 large T-antigen was used. TTE3 cells were cultured at nonpermissive temperature 39°C for 12 h.
|
| Sample_geo_accession | GSM160505
| | Sample_status | Public on Feb 23 2007
| | Sample_submission_date | Feb 06 2007
| | Sample_last_update_date | Feb 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the cells using an RNeasy Total RNA Extraction Kit (Qiagen K.K., Tokyo, Japan). Then, RNA samples were treated with RNase-free DNase.
| | Sample_label_ch1 | phycoerythrin
| | Sample_label_protocol_ch1 | 5 μg of total RNA was used to synthesize double-strand cDNA with a GeneChip® Expression 3’-Amplification Reagents One-Cycle cDNA Synthesis Kit (Affymetrix). Biotin-labeled cRNA was then synthesized from the cDNA using GeneChip® Expression 3’-Amplification Reagents for IVT Labeling (Affymetrix).
| | Sample_hyb_protocol | After fragmentation, the biotinylated cRNA was hybridized to arrays at 45°C for 16 h.
| | Sample_scan_protocol | The arrays were washed, stained with streptavidin-phycoerythrin and scanned with a probe array scanner (Affymetrix).
| | Sample_data_processing | GeneChip Analysis Suite
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yoshiaki,,Tabuchi
| | Sample_contact_email | ytabu@cts.u-toyama.ac.jp
| | Sample_contact_laboratory | Division of Molecular Genetics Research
| | Sample_contact_department | Life Science Research Center
| | Sample_contact_institute | University of Toyama
| | Sample_contact_address | 2630 Sugitani
| | Sample_contact_city | Toyama
| | Sample_contact_state | Toyama
| | Sample_contact_zip/postal_code | 930-0194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160505/suppl/GSM160505.CEL.gz
| | Sample_series_id | GSE6961
| | Sample_data_row_count | 22690
| | |
|
GSM160506 | GPL339 |
|
TTE3 cells cultured at nonpermissive temperature for 12 h-2
|
Mouse testicular Sertoli cell line TTE3
|
Mouse testicular Sertoli cell line TTE3
|
A mouse testicular Sertoli cell line, TTE3, derived from transgenic mice harboring a temperature-sensitive simian virus 40 large T-antigen was used. TTE3 cells were cultured at nonpermissive temperature 39°C for 12 h.
|
| Sample_geo_accession | GSM160506
| | Sample_status | Public on Feb 23 2007
| | Sample_submission_date | Feb 06 2007
| | Sample_last_update_date | Feb 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the cells using an RNeasy Total RNA Extraction Kit (Qiagen K.K., Tokyo, Japan). Then, RNA samples were treated with RNase-free DNase.
| | Sample_label_ch1 | phycoerythrin
| | Sample_label_protocol_ch1 | 5 μg of total RNA was used to synthesize double-strand cDNA with a GeneChip® Expression 3’-Amplification Reagents One-Cycle cDNA Synthesis Kit (Affymetrix). Biotin-labeled cRNA was then synthesized from the cDNA using GeneChip® Expression 3’-Amplification Reagents for IVT Labeling (Affymetrix).
| | Sample_hyb_protocol | After fragmentation, the biotinylated cRNA was hybridized to arrays at 45°C for 16 h.
| | Sample_scan_protocol | The arrays were washed, stained with streptavidin-phycoerythrin and scanned with a probe array scanner (Affymetrix).
| | Sample_data_processing | GeneChip Analysis Suite
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yoshiaki,,Tabuchi
| | Sample_contact_email | ytabu@cts.u-toyama.ac.jp
| | Sample_contact_laboratory | Division of Molecular Genetics Research
| | Sample_contact_department | Life Science Research Center
| | Sample_contact_institute | University of Toyama
| | Sample_contact_address | 2630 Sugitani
| | Sample_contact_city | Toyama
| | Sample_contact_state | Toyama
| | Sample_contact_zip/postal_code | 930-0194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160506/suppl/GSM160506.CEL.gz
| | Sample_series_id | GSE6961
| | Sample_data_row_count | 22690
| | |
|
GSM160508 | GPL339 |
|
TTE3 cells cultured at nonpermissive temperature for 24 h-1
|
Mouse testicular Sertoli cell line TTE3
|
Mouse testicular Sertoli cell line TTE3
|
A mouse testicular Sertoli cell line, TTE3, derived from transgenic mice harboring a temperature-sensitive simian virus 40 large T-antigen was used. TTE3 cells were cultured at nonpermissive temperature 39°C for 24 h.
|
| Sample_geo_accession | GSM160508
| | Sample_status | Public on Feb 23 2007
| | Sample_submission_date | Feb 06 2007
| | Sample_last_update_date | Feb 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the cells using an RNeasy Total RNA Extraction Kit (Qiagen K.K., Tokyo, Japan). Then, RNA samples were treated with RNase-free DNase.
| | Sample_label_ch1 | phycoerythrin
| | Sample_label_protocol_ch1 | 5 μg of total RNA was used to synthesize double-strand cDNA with a GeneChip® Expression 3’-Amplification Reagents One-Cycle cDNA Synthesis Kit (Affymetrix). Biotin-labeled cRNA was then synthesized from the cDNA using GeneChip® Expression 3’-Amplification Reagents for IVT Labeling (Affymetrix).
| | Sample_hyb_protocol | After fragmentation, the biotinylated cRNA was hybridized to arrays at 45°C for 16 h.
| | Sample_scan_protocol | The arrays were washed, stained with streptavidin-phycoerythrin and scanned with a probe array scanner (Affymetrix).
| | Sample_data_processing | GeneChip Analysis Suite
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yoshiaki,,Tabuchi
| | Sample_contact_email | ytabu@cts.u-toyama.ac.jp
| | Sample_contact_laboratory | Division of Molecular Genetics Research
| | Sample_contact_department | Life Science Research Center
| | Sample_contact_institute | University of Toyama
| | Sample_contact_address | 2630 Sugitani
| | Sample_contact_city | Toyama
| | Sample_contact_state | Toyama
| | Sample_contact_zip/postal_code | 930-0194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160508/suppl/GSM160508.CEL.gz
| | Sample_series_id | GSE6961
| | Sample_data_row_count | 22690
| | |
|
GSM160509 | GPL339 |
|
TTE3 cells cultured at nonpermissive temperature for 24 h-2
|
Mouse testicular Sertoli cell line TTE3
|
Mouse testicular Sertoli cell line TTE3
|
A mouse testicular Sertoli cell line, TTE3, derived from transgenic mice harboring a temperature-sensitive simian virus 40 large T-antigen was used. TTE3 cells were cultured at nonpermissive temperature 39°C for 24 h.
|
| Sample_geo_accession | GSM160509
| | Sample_status | Public on Feb 23 2007
| | Sample_submission_date | Feb 06 2007
| | Sample_last_update_date | Feb 22 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the cells using an RNeasy Total RNA Extraction Kit (Qiagen K.K., Tokyo, Japan). Then, RNA samples were treated with RNase-free DNase.
| | Sample_label_ch1 | phycoerythrin
| | Sample_label_protocol_ch1 | 5 μg of total RNA was used to synthesize double-strand cDNA with a GeneChip® Expression 3’-Amplification Reagents One-Cycle cDNA Synthesis Kit (Affymetrix). Biotin-labeled cRNA was then synthesized from the cDNA using GeneChip® Expression 3’-Amplification Reagents for IVT Labeling (Affymetrix).
| | Sample_hyb_protocol | After fragmentation, the biotinylated cRNA was hybridized to arrays at 45°C for 16 h.
| | Sample_scan_protocol | The arrays were washed, stained with streptavidin-phycoerythrin and scanned with a probe array scanner (Affymetrix).
| | Sample_data_processing | GeneChip Analysis Suite
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yoshiaki,,Tabuchi
| | Sample_contact_email | ytabu@cts.u-toyama.ac.jp
| | Sample_contact_laboratory | Division of Molecular Genetics Research
| | Sample_contact_department | Life Science Research Center
| | Sample_contact_institute | University of Toyama
| | Sample_contact_address | 2630 Sugitani
| | Sample_contact_city | Toyama
| | Sample_contact_state | Toyama
| | Sample_contact_zip/postal_code | 930-0194
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM160nnn/GSM160509/suppl/GSM160509.CEL.gz
| | Sample_series_id | GSE6961
| | Sample_data_row_count | 22690
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