Search results for the GEO ID: GSE7002 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM159724 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 5d ID138
|
EB_07_5d_138_Formaldehyde_RatNasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.732
OD280: 0.907
Ratio: 1.89
Dilution: 1:5
RNA Integrity Number: 7.9
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 138
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159724
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159724/suppl/GSM159724.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159725 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 5d ID139
|
EB_07_5d_139_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.469
OD280: 0.766
Ratio: 1.89
Dilution: 1:5
RNA Integrity Number: 8.4
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 139
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159725
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159725/suppl/GSM159725.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159726 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 5d ID140
|
EB_07_5d_140_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.434
OD280: 1.353
Ratio: 1.88
Dilution: 1:5
RNA Integrity Number: 7.6
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 140
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159726
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159726/suppl/GSM159726.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159727 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 6h ID127
|
EB_07_6h_127_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.588
OD280: 0.789
Ratio: 1.99
Dilution: 1:5
RNA Integrity Number: 8.5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 127
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hour time point
|
Sample_geo_accession | GSM159727
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159727/suppl/GSM159727.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159728 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 6h ID129
|
EB_07_6h_129_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.946
OD280: 0.992
Ratio: 1.92
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 129
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hour time point
|
Sample_geo_accession | GSM159728
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159728/suppl/GSM159728.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159729 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 6h ID287
|
EB_6_6h_287_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.435
OD280: 0.745
Ratio: 1.9
Dilution: 1:5
RNA Integrity Number: 7.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 287
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hour time point
|
Sample_geo_accession | GSM159729
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159729/suppl/GSM159729.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159730 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 8d ID298
|
EB_6_8d_298_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.708
OD280: 0.892
Ratio: 1.89
Dilution: 1:5
RNA Integrity Number: 7.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 298
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159730
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159730/suppl/GSM159730.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159731 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 8d ID299
|
EB_6_8d_299_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.536
OD280: 0.766
Ratio: 1.98
Dilution: 1:5
RNA Integrity Number: 7.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 299
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159731
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159731/suppl/GSM159731.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159732 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 8d ID300
|
EB_6_8d_300_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 0.977
OD280: 0.478
Ratio: 1.99
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 300
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159732
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159732/suppl/GSM159732.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159733 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 8d ID301
|
EB_6_8d_301_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 0.918
OD280: 0.454
Ratio: 1.99
Dilution: 1:5
RNA Integrity Number: 7.7
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 301
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159733
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159733/suppl/GSM159733.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159734 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 5d ID293
|
EB_6_5d_293_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.674
OD280: 0.969
Ratio: 1.87
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 293
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159734
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159734/suppl/GSM159734.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159735 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 5d ID294
|
EB_6_5d_294_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.683
OD280: 0.839
Ratio: 1.98
Dilution: 1:5
RNA Integrity Number: 8.1
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 294
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159735
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159735/suppl/GSM159735.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159736 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 5d ID296
|
EB_6_5d_296_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.254
OD280: 0.641
Ratio: 1.98
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 296
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159736
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159736/suppl/GSM159736.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159737 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 5d ID297
|
EB_6_5d_297_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.229
OD280: 1.143
Ratio: 1.93
Dilution: 1:5
RNA Integrity Number: 7.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 297
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159737
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159737/suppl/GSM159737.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159738 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 6h ID283
|
EB_6_6h_283_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.371
OD280: 0.727
Ratio: 1.87
Dilution: 1:5
RNA Integrity Number: 7.7
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 283
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hour time point
|
Sample_geo_accession | GSM159738
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159738/suppl/GSM159738.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159739 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 6h ID284
|
EB_6_6h_284_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.092
OD280: 0.567
Ratio: 1.89
Dilution: 1:5
RNA Integrity Number: 7.7
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 284
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hour time point
|
Sample_geo_accession | GSM159739
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159739/suppl/GSM159739.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159740 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 6h ID286
|
EB_6_6h_286_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.04
OD280: 0.53
Ratio: 1.97
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 286
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hour time point
|
Sample_geo_accession | GSM159740
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159740/suppl/GSM159740.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159741 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 19d ID309
|
EB_6_19d_309_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.448
OD280: 0.781
Ratio: 1.85
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 309
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159741
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159741/suppl/GSM159741.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159742 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 19d ID310
|
EB_6_19d_310_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 0.881
OD280: 0.457
Ratio: 1.95
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 310
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159742
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159742/suppl/GSM159742.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159743 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 19d ID312
|
EB_6_19d_312_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.315
OD280: 0.668
Ratio: 1.95
Dilution: 1:5
RNA Integrity Number: 8.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 312
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159743
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159743/suppl/GSM159743.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159744 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 24h ID288
|
EB_6_24h_288_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.242
OD280: 1.1
Ratio: 1.97
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 288
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hrs per day, 24 h time point
|
Sample_geo_accession | GSM159744
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159744/suppl/GSM159744.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159745 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 24h ID289
|
EB_6_24h_289_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.088
OD280: 0.579
Ratio: 1.8
Dilution: 1:5
RNA Integrity Number: 8.6
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 289
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hrs per day, 24 h time point
|
Sample_geo_accession | GSM159745
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159745/suppl/GSM159745.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159746 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 24h ID290
|
EB_6_24h_290_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.853
OD280: 0.955
Ratio: 1.88
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 290
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hrs per day, 24 h time point
|
Sample_geo_accession | GSM159746
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159746/suppl/GSM159746.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159747 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 24h ID292
|
EB_6_24h_292_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.326
OD280: 0.691
Ratio: 1.83
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 292
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hrs per day, 24 h time point
|
Sample_geo_accession | GSM159747
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159747/suppl/GSM159747.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159748 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 8d ID221
|
EB_2_8d_221_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.539
OD280: 1.303
Ratio: 1.91
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 221
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159748
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159748/suppl/GSM159748.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159749 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 8d ID222
|
EB_2_8d_222_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.381
OD280: 0.716
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 8.1
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 222
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159749
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159749/suppl/GSM159749.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159750 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 8d ID223
|
EB_2_8d_223_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.226
OD280: 1.154
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 7.9
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 223
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159750
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159750/suppl/GSM159750.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159751 | GPL1355 |
|
Nasal Epithelium Instilation Formaldehyde 400mM 6h ID365
|
EB_400_6_365_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 3.054
OD280: 1.504
Ratio: 1.99
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 365
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde instilation exposure, 400 mM formaldehyde, single exposure, 6 h time point
|
Sample_geo_accession | GSM159751
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Vehicle for Chemical: Water, Amount of Vehicle: 40, Route of Exposure: Instillation (nasal), Units of Amount of Vehicle: ul per nostril, Dose or Concentration: 400, Units of Dose or Concentration: mM
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159751/suppl/GSM159751.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159752 | GPL1355 |
|
Nasal Epithelium Instilation Formaldehyde 400mM 6h ID369
|
EB_400_6_369_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.572
OD280: 1.326
Ratio: 1.9
Dilution: 1:5
RNA Integrity Number: 8.4
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 369
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde instilation exposure, 400 mM formaldehyde, single exposure, 6 h time point
|
Sample_geo_accession | GSM159752
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Vehicle for Chemical: Water, Amount of Vehicle: 40, Route of Exposure: Instillation (nasal), Units of Amount of Vehicle: ul per nostril, Dose or Concentration: 400, Units of Dose or Concentration: mM
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159752/suppl/GSM159752.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159753 | GPL1355 |
|
Nasal Epithelium Instilation Formaldehyde 400mM 6h ID372
|
EB_400_6_372_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.811
OD280: 0.9
Ratio: 1.97
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 372
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde instilation exposure, 400 mM formaldehyde, single exposure, 6 h time point
|
Sample_geo_accession | GSM159753
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Vehicle for Chemical: Water, Amount of Vehicle: 40, Route of Exposure: Instillation (nasal), Units of Amount of Vehicle: ul per nostril, Dose or Concentration: 400, Units of Dose or Concentration: mM
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159753/suppl/GSM159753.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159754 | GPL1355 |
|
Nasal Epithelium Instilation Formaldehyde 400mM 6h ID374
|
EB_400_6_374_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.236
OD280: 1.154
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 374
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde instilation exposure, 400 mM formaldehyde, single exposure, 6 h time point
|
Sample_geo_accession | GSM159754
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Vehicle for Chemical: Water, Amount of Vehicle: 40, Route of Exposure: Instillation (nasal), Units of Amount of Vehicle: ul per nostril, Dose or Concentration: 400, Units of Dose or Concentration: mM
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159754/suppl/GSM159754.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159755 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 6ppm 19d ID308
|
EB_6_19d_308_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.386
OD280: 0.669
Ratio: 2.01
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 308
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 6 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159755
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 6, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159755/suppl/GSM159755.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159756 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 5d ID219
|
EB_2_5d_219_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.681
OD280: 0.848
Ratio: 1.97
Dilution: 1:5
RNA Integrity Number: 8.1
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 219
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159756
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159756/suppl/GSM159756.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159757 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 6h ID205
|
EB_2_6h_205_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.442
OD280: 1.248
Ratio: 1.93
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 205
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 h time point
|
Sample_geo_accession | GSM159757
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159757/suppl/GSM159757.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159758 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 6h ID206
|
EB_2_6h_206_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.72
OD280: 0.901
Ratio: 1.88
Dilution: 1:5
RNA Integrity Number: 8.6
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 206
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 h time point
|
Sample_geo_accession | GSM159758
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159758/suppl/GSM159758.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159759 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 6h ID207
|
EB_2_6h_207_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 0.848
OD280: 0.434
Ratio: 1.97
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 207
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 h time point
|
Sample_geo_accession | GSM159759
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159759/suppl/GSM159759.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159760 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 6h ID209
|
EB_2_6h_209_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 0.898
OD280: 0.49
Ratio: 1.84
Dilution: 1:5
RNA Integrity Number: 7.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 209
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 h time point
|
Sample_geo_accession | GSM159760
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159760/suppl/GSM159760.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159761 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 8d ID220
|
EB_2_8d_220_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.749
OD280: 0.86
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 220
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159761
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159761/suppl/GSM159761.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159762 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 24h ID211
|
EB_2_24h_211_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.377
OD280: 0.716
Ratio: 1.86
Dilution: 1:5
RNA Integrity Number: 8.1
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 211
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hrs per day, 24 h time point
|
Sample_geo_accession | GSM159762
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159762/suppl/GSM159762.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159763 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 24h ID212
|
EB_2_24h_212_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.124
OD280: 0.574
Ratio: 1.86
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 212
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hrs per day, 24 h time point
|
Sample_geo_accession | GSM159763
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159763/suppl/GSM159763.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159764 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 24h ID213
|
EB_2_24h_213_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.607
OD280: 0.846
Ratio: 1.83
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 213
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hrs per day, 24 h time point
|
Sample_geo_accession | GSM159764
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159764/suppl/GSM159764.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159765 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 24h ID214
|
EB_2_24h_214_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.172
OD280: 1.137
Ratio: 1.87
Dilution: 1:5
RNA Integrity Number: 8.5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 214
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hrs per day, 24 h time point
|
Sample_geo_accession | GSM159765
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159765/suppl/GSM159765.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159766 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 5d ID215
|
EB_2_5d_215_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.652
OD280: 0.857
Ratio: 1.92
Dilution: 1:5
RNA Integrity Number: 7.9
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 215
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159766
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159766/suppl/GSM159766.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159767 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 5d ID216
|
EB_2_5d_216_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.042
OD280: 1.079
Ratio: 1.95
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 216
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159767
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159767/suppl/GSM159767.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159768 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 5d ID217
|
EB_2_5d_217_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.15
OD280: 0.539
Ratio: 2.03
Dilution: 1:5
RNA Integrity Number: 7.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 217
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159768
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159768/suppl/GSM159768.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159769 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 5d ID218
|
EB_2_5d_218_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.03
OD280: 1.028
Ratio: 1.96
Dilution: 1:5
RNA Integrity Number: 7.4
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 218
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159769
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159769/suppl/GSM159769.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159770 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 15ppm 6h ID338
|
EB_15_6_338_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.975
OD280: 1.082
Ratio: 1.86
Dilution: 1:5
RNA Integrity Number: 7.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 338
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 15 ppm, 6 h time point
|
Sample_geo_accession | GSM159770
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 15, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159770/suppl/GSM159770.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159771 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 15ppm 6h ID341
|
EB_15_6_341_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.592
OD280: 1.273
Ratio: 2.03
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 341
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 15 ppm, 6 h time point
|
Sample_geo_accession | GSM159771
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 15, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159771/suppl/GSM159771.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159772 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 15ppm 6h ID342
|
EB_15_6_342_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.408
OD280: 1.228
Ratio: 1.95
Dilution: 1:5
RNA Integrity Number: 8.1
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 342
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 15 ppm, 6 h time point
|
Sample_geo_accession | GSM159772
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 15, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159772/suppl/GSM159772.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159773 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 19d ID230
|
EB_2_19d_230_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.232
OD280: 0.618
Ratio: 1.95
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 230
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159773
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159773/suppl/GSM159773.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159774 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 19d ID232
|
EB_2_19d_232_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.515
OD280: 0.791
Ratio: 1.89
Dilution: 1:5
RNA Integrity Number: 8.6
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 232
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159774
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159774/suppl/GSM159774.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159775 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 19d ID233
|
EB_2_19d_233_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.929
OD280: 1.018
Ratio: 1.86
Dilution: 1:5
RNA Integrity Number: 8.7
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 233
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159775
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159775/suppl/GSM159775.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159776 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 2ppm 19d ID234
|
EB_2_19d_234_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.675
OD280: 0.838
Ratio: 1.96
Dilution: 1:5
RNA Integrity Number: 8.6
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 234
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 2 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159776
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 2, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159776/suppl/GSM159776.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159777 | GPL1355 |
|
Nasal Epithelium Instilation Formaldehyde 0mM 6h ID355
|
EB_0_6_355_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 3.469
OD280: 1.802
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 355
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde instilation exposure, vehicle control, single exposure, 6 h time point
|
Sample_geo_accession | GSM159777
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Vehicle for Chemical: Water, Amount of Vehicle: 40, Route of Exposure: Instillation (nasal), Units of Amount of Vehicle: ul per nostril, Dose or Concentration: 0, Units of Dose or Concentration: mM
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159777/suppl/GSM159777.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159778 | GPL1355 |
|
Nasal Epithelium Instilation Formaldehyde 0mM 6h ID356
|
EB_0_6_356_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 3.908
OD280: 1.959
Ratio: 1.96
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 356
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde instilation exposure, vehicle control, single exposure, 6 h time point
|
Sample_geo_accession | GSM159778
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Vehicle for Chemical: Water, Amount of Vehicle: 40, Route of Exposure: Instillation (nasal), Units of Amount of Vehicle: ul per nostril, Dose or Concentration: 0, Units of Dose or Concentration: mM
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159778/suppl/GSM159778.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159779 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 8d ID64
|
EB_0_8d_64_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.222
OD280: 1.139
Ratio: 1.9
Dilution: 1:5
RNA Integrity Number: 8.4
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 64
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159779
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159779/suppl/GSM159779.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159780 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 8d ID65
|
EB_0_8d_65_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.743
OD280: 0.932
Ratio: 1.84
Dilution: 1:5
RNA Integrity Number: 8.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 65
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159780
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159780/suppl/GSM159780.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159781 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 8d ID66
|
EB_0_8d_66_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.318
OD280: 1.187
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 66
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159781
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159781/suppl/GSM159781.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159782 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 8d ID67
|
EB_0_8d_67_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.007
OD280: 0.497
Ratio: 1.97
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 67
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159782
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159782/suppl/GSM159782.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159783 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 8d ID68
|
EB_0_8d_68_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.644
OD280: 1.383
Ratio: 1.88
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 68
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159783
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159783/suppl/GSM159783.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159784 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 15ppm 6h ID337
|
EB_15_6_337_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.417
OD280: 1.217
Ratio: 1.98
Dilution: 1:5
RNA Integrity Number: 7.7
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 337
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 15 ppm, 6 h time point
|
Sample_geo_accession | GSM159784
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 15, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159784/suppl/GSM159784.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159785 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 6h ID53
|
EB_0_6h_53_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.708
OD280: 0.905
Ratio: 1.86
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 53
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 h time point
|
Sample_geo_accession | GSM159785
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159785/suppl/GSM159785.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159786 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 6h ID321
|
EB_0_6_321_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 3.245
OD280: 1.679
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 7.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 321
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 h time point
|
Sample_geo_accession | GSM159786
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159786/suppl/GSM159786.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159787 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 6h ID322
|
EB_0_6_322_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 3.023
OD280: 1.564
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 7.4
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 322
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 h time point
|
Sample_geo_accession | GSM159787
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159787/suppl/GSM159787.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159788 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 6h ID323
|
EB_0_6_323_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 3.413
OD280: 1.719
Ratio: 1.95
Dilution: 1:5
RNA Integrity Number: 7.4
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 323
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 h time point
|
Sample_geo_accession | GSM159788
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159788/suppl/GSM159788.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159789 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 6h ID325
|
EB_0_6_325_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 4.08
OD280: 2.003
Ratio: 2.01
Dilution: 1:5
RNA Integrity Number: 7.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 325
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 h time point
|
Sample_geo_accession | GSM159789
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159789/suppl/GSM159789.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159790 | GPL1355 |
|
Nasal Epithelium Instilation Formaldehyde 0mM 6h ID352
|
EB_0_6_352_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 3.678
OD280: 1.857
Ratio: 1.95
Dilution: 1:5
RNA Integrity Number: 7.5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 352
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde instilation exposure, vehicle control, single exposure, 6 h time point
|
Sample_geo_accession | GSM159790
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Vehicle for Chemical: Water, Amount of Vehicle: 40, Route of Exposure: Instillation (nasal), Units of Amount of Vehicle: ul per nostril, Dose or Concentration: 0, Units of Dose or Concentration: mM
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159790/suppl/GSM159790.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159791 | GPL1355 |
|
Nasal Epithelium Instilation Formaldehyde 0mM 6h ID354
|
EB_0_6_354_HCHO_nasal_Rat230_2_EB_HCHO_Rat_Nasal
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 3.701
OD280: 1.82
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 354
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde instilation exposure, vehicle control, single exposure, 6 h time point
|
Sample_geo_accession | GSM159791
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Vehicle for Chemical: Water, Amount of Vehicle: 40, Route of Exposure: Instillation (nasal), Units of Amount of Vehicle: ul per nostril, Dose or Concentration: 0, Units of Dose or Concentration: mM
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159791/suppl/GSM159791.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159792 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 5d ID60
|
EB_0_5d_60_Formaldehyde_RatNasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.163
OD280: 0.612
Ratio: 1.87
Dilution: 1:5
RNA Integrity Number: 7.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 60
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159792
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159792/suppl/GSM159792.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159793 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 5d ID61
|
EB_0_5d_61_Formaldehyde_RatNasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.894
OD280: 0.979
Ratio: 1.9
Dilution: 1:5
RNA Integrity Number: 7.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 61
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159793
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159793/suppl/GSM159793.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159794 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 5d ID62
|
EB_0_5d_62_Formaldehyde_RatNasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.542
OD280: 0.787
Ratio: 1.93
Dilution: 1:5
RNA Integrity Number: 7.7
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 62
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159794
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159794/suppl/GSM159794.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159795 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 5d ID63
|
EB_0_5d_63_Formaldehyde_RatNasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.549
OD280: 0.803
Ratio: 1.9
Dilution: 1:5
RNA Integrity Number: 7.9
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 63
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159795
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159795/suppl/GSM159795.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159796 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 6h ID49
|
EB_0_6h_49_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.692
OD280: 1.387
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 49
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 h time point
|
Sample_geo_accession | GSM159796
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159796/suppl/GSM159796.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159797 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 6h ID50
|
EB_0_6h_50_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.242
OD280: 1.132
Ratio: 1.95
Dilution: 1:5
RNA Integrity Number: 7.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 50
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 h time point
|
Sample_geo_accession | GSM159797
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159797/suppl/GSM159797.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159798 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 6h ID52
|
EB_0_6h_52_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.843
OD280: 0.95
Ratio: 1.9
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 52
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 h time point
|
Sample_geo_accession | GSM159798
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159798/suppl/GSM159798.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159799 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 19d ID75
|
EB_0_19d_75_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.626
OD280: 0.845
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 8.4
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 75
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159799
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159799/suppl/GSM159799.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159800 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 19d ID76
|
EB_0_19d_76_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.748
OD280: 0.861
Ratio: 2.01
Dilution: 1:5
RNA Integrity Number: 8.5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 76
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159800
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159800/suppl/GSM159800.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159801 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 19d ID77
|
EB_0_19d_77_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.808
OD280: 0.956
Ratio: 1.88
Dilution: 1:5
RNA Integrity Number: 8.4
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 77
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159801
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159801/suppl/GSM159801.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159802 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 24h ID54
|
EB_0_24h_54_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.782
OD280: 1.422
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 54
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 24 h time point
|
Sample_geo_accession | GSM159802
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159802/suppl/GSM159802.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159803 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 24h ID56
|
EB_0_24h_56_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.899
OD280: 1.476
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 7.5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 56
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 24 h time point
|
Sample_geo_accession | GSM159803
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159803/suppl/GSM159803.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159804 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 24h ID57
|
EB_0_24h_57_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.468
OD280: 1.278
Ratio: 1.88
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 57
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 24 h time point
|
Sample_geo_accession | GSM159804
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159804/suppl/GSM159804.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159805 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 24h ID58
|
EB_0_24h_58_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.509
OD280: 0.793
Ratio: 1.84
Dilution: 1:5
RNA Integrity Number: 7.9
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 58
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 24 h time point
|
Sample_geo_accession | GSM159805
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159805/suppl/GSM159805.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159806 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 6h ID130
|
EB_07_6h_130_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.621
OD280: 0.822
Ratio: 1.93
Dilution: 1:5
RNA Integrity Number: 8.4
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 130
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hour time point
|
Sample_geo_accession | GSM159806
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159806/suppl/GSM159806.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159807 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 6h ID131
|
EB_07_6h_131_Formaldehyde_RatNasalTissue_CIIT05024_Rat230_2
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.04
OD280: 1.071
Ratio: 1.88
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 131
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 6, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hour time point
|
Sample_geo_accession | GSM159807
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Duration: 6, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159807/suppl/GSM159807.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159808 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 8d ID143
|
EB_07_8d_143_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.793
OD280: 0.877
Dilution: 1:5
RNA Integrity Number: 8.5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 143
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159808
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.07, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159808/suppl/GSM159808.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159809 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 8d ID144
|
EB_07_8d_144_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.265
OD280: 1.203
Ratio: 1.85
Dilution: 1:5
RNA Integrity Number: 8.6
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 144
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159809
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.07, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159809/suppl/GSM159809.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159810 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 8d ID145
|
EB_07_8d_145_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.606
OD280: 0.744
Ratio: 2.12
Dilution: 1:5
RNA Integrity Number: 8.2
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 145
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159810
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.07, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159810/suppl/GSM159810.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159811 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 8d ID146
|
EB_07_8d_146_HCHO_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.631
OD280: 0.833
Ratio: 1.93
Dilution: 1:5
RNA Integrity Number: 8.1
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 146
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 8, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 8 day time point
|
Sample_geo_accession | GSM159811
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 8, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.07, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159811/suppl/GSM159811.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159812 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 0ppm 19d ID73
|
EB_0_19d_73_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.615
OD280: 0.851
Ratio: 1.88
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 73
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, air control, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159812
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159812/suppl/GSM159812.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159813 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 19d ID152
|
EB_07_19d_152_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.221
OD280: 0.621
Ratio: 1.96
Dilution: 1:5
RNA Integrity Number: 8.4
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 152
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159813
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159813/suppl/GSM159813.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159814 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 19d ID154
|
EB_07_19d_154_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.139
OD280: 0.58
Ratio: 1.95
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 154
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159814
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159814/suppl/GSM159814.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159815 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 19d ID155
|
EB_07_19d_155_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.475
OD280: 0.755
Ratio: 1.93
Dilution: 1:5
RNA Integrity Number: 8.1
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 155
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159815
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159815/suppl/GSM159815.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159816 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 19d ID156
|
EB_07_19d_156_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.809
OD280: 0.918
Ratio: 1.95
Dilution: 1:5
RNA Integrity Number: 8.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 156
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 19, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 19 day time point
|
Sample_geo_accession | GSM159816
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 19, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159816/suppl/GSM159816.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159817 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 24h ID132
|
EB_07_24h_132_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.789
OD280: 0.949
Ratio: 1.83
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 132
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 24 h time point
|
Sample_geo_accession | GSM159817
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159817/suppl/GSM159817.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159818 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 24h ID133
|
EB_07_24h_133_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.767
OD280: 1.439
Ratio: 1.87
Dilution: 1:5
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 133
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 24 h time point
|
Sample_geo_accession | GSM159818
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159818/suppl/GSM159818.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159819 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 24h ID134
|
EB_07_24h_134_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 2.167
OD280: 1.069
Ratio: 1.95
Dilution: 1:5
RNA Integrity Number: 8.3
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 134
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 24 h time point
|
Sample_geo_accession | GSM159819
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159819/suppl/GSM159819.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159820 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 24h ID136
|
EB_07_24h_136_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.301
OD280: 0.666
Ratio: 1.88
Dilution: 1:5
RNA Integrity Number: 7.8
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 136
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 24, Units of Harvest Time Point: hrs
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 24 h time point
|
Sample_geo_accession | GSM159820
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 24, Units of Duration: hrs, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159820/suppl/GSM159820.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
GSM159821 | GPL1355 |
|
Nasal Epithelium Inhalation Formaldehyde 07ppm 5d ID137
|
EB_07_5d_137_Formaldehyde_Nasal_Rat230_2_CIIT05024
|
Array Type: Rat230_2
Amount to Core: 15
Units of Amount: ul
OD260: 1.814
OD280: 0.932
Ratio: 1.91
Dilution: 1:5
RNA Integrity Number: 8.1
Bioanalyzer Results: Good
Sample Preservation: Cells resuspended in RNAlater and stored at 4 degrees Centigrade
Strain or Line: F344/NCrl
NCBI Taxonomy ID: 10116
Individual: 137
Developmental State: Adult
Sacrifice Method: Deep pentobarbital anesthesia followed by exsanguination
Sex: Male
Units of Age: weeks
|
Sample Type: Cells, Tissue: nasal epithelial cells (level II region), Tissue Harvest Methods: The nose was dissected to isolate the Level II region of both nostrils. The maxillo turbinate and olfactory epithelium were discarded and the lateral meatus and nasoturbinate were retained for cell isolation. The dissected nasal sections were rinsed with cold phosphate buffered saline to remove the blood. After rinsing, a 5 ml buffered mixture of proteases (collagenase, 80 U/ml, Sigma-Aldrich; pronase, 10 mg/ml, Sigma-Aldrich; HEPES, 0.1 M) in Hams F12 medium (Invitrogen, Carlsbad, CA) was added to the nose and incubated at 37°C for 40 minutes to remove the epithelial cell layer. Following incubation, the mixture was vortexed and the resulting cell suspension was collected in a clean centrifuge tube. The cell suspension was centrifuged (200 x g, 10 min, 10°C) and the cell pellet was resuspended in 50 ?L PBS and 200 ?L RNAlater (Ambion, Austin, TX). The epithelial cells acquired consisted primarily of transitional epithelium with some respiratory epithelium., Harvest Time Point: 5, Units of Harvest Time Point: days
nasal epithelium, formaldehyde inhalation exposure, 0.7 ppm, 6 hours per day, 5 days per week, 5 day time point
|
Sample_geo_accession | GSM159821
| Sample_status | Public on Apr 23 2007
| Sample_submission_date | Jan 31 2007
| Sample_last_update_date | Apr 23 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Ed Bermudez, CIIT Centers for Health Research, 6 Davis Drive, PO Box 12137, Research Triangle Park, NC, 27709, Russell Thomas, rthomas@ciit.org, 919 558 1311, 919 558 1300
| Sample_treatment_protocol_ch1 | in vivo Treatment: Formaldehyde, Treatment Repeat: 5, Units of Treatment Repeat: days per week, Treatment Duration: 5, Units of Duration: days, Treatment Time: 6, Units of Treatment Time: hrs per day, Route of Exposure: Inhalation (whole-body), Dose or Concentration: 0.7, Units of Dose or Concentration: ppm
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Qiagen Micro RNA kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | affylmGUI, The Walter and Eliza Hall Institute of Medical Research
| Sample_platform_id | GPL1355
| Sample_contact_name | Russell,Scott,Thomas
| Sample_contact_email | rthomas@thehamner.org
| Sample_contact_phone | 919-558-1311
| Sample_contact_fax | 919-558-1300
| Sample_contact_institute | The Hamner Institutes for Health Sciences
| Sample_contact_address | 6 Davis Drive
| Sample_contact_city | Research Triangle Park
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM159nnn/GSM159821/suppl/GSM159821.CEL.gz
| Sample_series_id | GSE7002
| Sample_data_row_count | 31099
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|