Search results for the GEO ID: GSE7011  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM161803 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 18, grown serum-free, replicate 1
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161803
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161803/suppl/GSM161803.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161804 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 18, grown serum-free, replicate 2
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161804
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161804/suppl/GSM161804.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161805 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 17, grown serum-free, replicate 1
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161805
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161805/suppl/GSM161805.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161806 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 17, grown serum-free, replicate 2
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161806
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161806/suppl/GSM161806.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161807 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 4, grown serum-free
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161807
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161807/suppl/GSM161807.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161808 | GPL570 |
|
MLL-AF9 expressing cord blood cell, clone 4, grown serum-free
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161808
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161808/suppl/GSM161808.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161809 | GPL570 |
|
CBFbeta-MYH11 expressing cord blood cell, clone 2.2, grown serum-free, replicate 1
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161809
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161809/suppl/GSM161809.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161810 | GPL570 |
|
CBFbeta-MYH11 expressing cord blood cell, clone 2.2, grown serum-free, replicate 2
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161810
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161810/suppl/GSM161810.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161811 | GPL570 |
|
CBFbeta-MYH11 expressing cord blood cell, clone 6, grown serum-free
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161811
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161811/suppl/GSM161811.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161812 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 18, grown with serum, replicate 2
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161812
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161812/suppl/GSM161812.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161813 | GPL570 |
|
MLL-AF9 expressing cord blood cell, clone 1, grown with serum
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161813
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161813/suppl/GSM161813.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161814 | GPL570 |
|
MLL-AF9 expressing cord blood cell, clone 3, grown with serum
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161814
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161814/suppl/GSM161814.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161815 | GPL570 |
|
MLL-AF9 expressing cord blood cell, clone 4, grown with serum
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161815
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161815/suppl/GSM161815.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161816 | GPL570 |
|
MLL-AF9 expressing cord blood cell, clone 5, grown with serum
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161816
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161816/suppl/GSM161816.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161817 | GPL570 |
|
MLL-AF9 expressing cord blood cell, clone 1, grown serum-free, replicate 1
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161817
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161817/suppl/GSM161817.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161818 | GPL570 |
|
MLL-AF9 expressing cord blood cell, clone 1, grown serum-free, replicate 2
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161818
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161818/suppl/GSM161818.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161819 | GPL570 |
|
MLL-AF9 expressing cord blood cell, clone 3, grown serum-free, replicate 1
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161819
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161819/suppl/GSM161819.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
GSM161820 | GPL570 |
|
MLL-AF9 expressing cord blood cell, clone 3, grown serum-free, replicate 2
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from in vitro cultures of fusion-gene-transduced cord blood cells
|
| Sample_geo_accession | GSM161820
| | Sample_status | Public on May 01 2008
| | Sample_submission_date | Feb 12 2007
| | Sample_last_update_date | Apr 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ‘One-cycle target labeling’ protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| | Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | James,,Mulloy
| | Sample_contact_email | james.mulloy@cchmc.org
| | Sample_contact_phone | (513) 636-1844
| | Sample_contact_fax | 513-636-3768
| | Sample_contact_laboratory | ML7013
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| | Sample_contact_address | 3333 Burnet Ave
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161820/suppl/GSM161820.CEL.gz
| | Sample_series_id | GSE7011
| | Sample_data_row_count | 54675
| | |
|
| |
| |
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