Search results for the GEO ID: GSE7014 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM161935 | GPL570 |
|
DM1_F?_BB_01
|
Skeletal Muscle
|
DM1 patient
biopsy site: Biceps Brachii
|
DM1 patient, age unknown, gender Female
|
Sample_geo_accession | GSM161935
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161935/suppl/GSM161935.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161936 | GPL570 |
|
DM1_F?_BB_02
|
Skeletal Muscle
|
DM1 patient
biopsy site: Biceps Brachii
|
DM1 patient, age unknown, gender Female
|
Sample_geo_accession | GSM161936
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161936/suppl/GSM161936.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161937 | GPL570 |
|
DM1_F?_D_03
|
Skeletal Muscle
|
DM1 patient
bipsy site: Deltoid
|
DM1 patient, age unknown, gender Female
|
Sample_geo_accession | GSM161937
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161937/suppl/GSM161937.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161938 | GPL570 |
|
DM1_F55_D_04
|
Skeletal Muscle
|
DM1 patient
biopsy site: Deltoid
|
DM1 patient, age 55, gender Female
|
Sample_geo_accession | GSM161938
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161938/suppl/GSM161938.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161939 | GPL570 |
|
DM1_??_?_05
|
Skeletal Muscle
|
DM1 patient
biopsy site: unknown
|
DM1 patient, age unknown, gender Unknown
|
Sample_geo_accession | GSM161939
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161939/suppl/GSM161939.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161940 | GPL570 |
|
DM1_F54_?_06
|
Skeletal Muscle
|
DM1 patient
biopsy site: unknown
|
DM1 patient, age 54, gender Female
|
Sample_geo_accession | GSM161940
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161940/suppl/GSM161940.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161941 | GPL570 |
|
DM1_M25_?_07
|
Skeletal Muscle
|
DM1 patient
biopsy site: unknown
|
DM1 patient, age 25, gender Male
|
Sample_geo_accession | GSM161941
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161941/suppl/GSM161941.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161942 | GPL570 |
|
DM1_F29_BB_08
|
Skeletal Muscle
|
DM1 patient
biopsy site: Biceps Brachii
|
DM1 patient, age 29, gender Female
|
Sample_geo_accession | GSM161942
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161942/suppl/GSM161942.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161943 | GPL570 |
|
DM1_??_?_09
|
Skeletal Muscle
|
DM1 patient
biopsy site: unknown
|
DM1 patient, age unknown, gender Unknown
|
Sample_geo_accession | GSM161943
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161943/suppl/GSM161943.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161944 | GPL570 |
|
DM1_M21_?_10
|
Skeletal Muscle
|
DM1 patient
biopsy site: unknown
|
DM1 patient, age 21, gender Male
|
Sample_geo_accession | GSM161944
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161944/suppl/GSM161944.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161945 | GPL570 |
|
DM2_F71_BB_01
|
Skeletal Muscle
|
DM2 patient
biopsy site: Biceps Brachii
|
DM2 patient, age 71, gender Female
|
Sample_geo_accession | GSM161945
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161945/suppl/GSM161945.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161946 | GPL570 |
|
DM2_M39_BB_02
|
Skeletal Muscle
|
DM2 patient
biopsy site: Biceps Brachii
|
DM2 patient, age 39, gender Male
|
Sample_geo_accession | GSM161946
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161946/suppl/GSM161946.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161948 | GPL570 |
|
DM2_M69_Q_03
|
Skeletal Muscle
|
DM2 patient
biopsy site: Quadriceps
|
DM2 patient, age 69, gender Male
|
Sample_geo_accession | GSM161948
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161948/suppl/GSM161948.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161949 | GPL570 |
|
DM2_M?_BB_04
|
Skeletal Muscle
|
DM2 patient
biopsy site: Biceps Brachii
|
DM2 patient, age unknown, gender Male
|
Sample_geo_accession | GSM161949
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161949/suppl/GSM161949.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161950 | GPL570 |
|
DM2_M68_D_05
|
Skeletal Muscle
|
DM2 patient
biopsy site: Deltoid
|
DM2 patient, age 68, gender Male
|
Sample_geo_accession | GSM161950
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161950/suppl/GSM161950.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161951 | GPL570 |
|
DM2_M32_D_06
|
Skeletal Muscle
|
DM2 patient
biopsy site: Deltoid
|
DM2 patient, age 32, gender Male
|
Sample_geo_accession | GSM161951
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161951/suppl/GSM161951.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161952 | GPL570 |
|
DM2_F47_D_07
|
Skeletal Muscle
|
DM2 patient
biopsy site: Deltoid
|
DM2 patient, age 47, gender Female
|
Sample_geo_accession | GSM161952
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161952/suppl/GSM161952.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161953 | GPL570 |
|
DM2_F57_VL_08
|
Skeletal Muscle
|
DM2 patient
biopsy site: Vastus Lateralis
|
DM2 patient, age 57, gender Female
|
Sample_geo_accession | GSM161953
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161953/suppl/GSM161953.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161954 | GPL570 |
|
DM2_F43_VL_09
|
Skeletal Muscle
|
DM2 patient
biopsy site: Vastus Lateralis
|
DM2 patient, age 43, gender Female
|
Sample_geo_accession | GSM161954
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161954/suppl/GSM161954.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161955 | GPL570 |
|
DM2_F37_VL_10
|
Skeletal Muscle
|
DM2 patient
biopsy site: Vastus Lateralis
|
DM2 patient, age 37, gender Female
|
Sample_geo_accession | GSM161955
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161955/suppl/GSM161955.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161956 | GPL570 |
|
DM2_M47_VL_11
|
Skeletal Muscle
|
DM2 patient
biopsy site: Vastus Lateralis
|
DM2 patient, age 47, gender Male
|
Sample_geo_accession | GSM161956
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161956/suppl/GSM161956.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161957 | GPL570 |
|
DM2_M54_VL_12
|
Skeletal Muscle
|
DM2 patient
biopsy site: Vastus Lateralis
|
DM2 patient, age 54, gender Male
|
Sample_geo_accession | GSM161957
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161957/suppl/GSM161957.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161958 | GPL570 |
|
DM2_F43_?_13
|
Skeletal Muscle
|
DM2 patient
biopsy site: unknown
|
DM2 patient, age 43, gender Female
|
Sample_geo_accession | GSM161958
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161958/suppl/GSM161958.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161959 | GPL570 |
|
DM2_F65_?_14
|
Skeletal Muscle
|
DM2 patient
biopsy site: unknown
|
DM2 patient, age 65, gender Female
|
Sample_geo_accession | GSM161959
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161959/suppl/GSM161959.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161960 | GPL570 |
|
DM2_F42_?_15
|
Skeletal Muscle
|
DM2 patient
biopsy site: unknown
|
DM2 patient, age 42, gender Female
|
Sample_geo_accession | GSM161960
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161960/suppl/GSM161960.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161961 | GPL570 |
|
DM2_F50_?_16
|
Skeletal Muscle
|
DM2 patient
biopsy site: unknown
|
DM2 patient, age 50, gender Female
|
Sample_geo_accession | GSM161961
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161961/suppl/GSM161961.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161962 | GPL570 |
|
DM2_F51_?_17
|
Skeletal Muscle
|
DM2 patient
biopsy site: unknown
|
DM2 patient, age 51, gender Female
|
Sample_geo_accession | GSM161962
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161962/suppl/GSM161962.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161963 | GPL570 |
|
DM2_F58_?_18
|
Skeletal Muscle
|
DM2 patient
biopsy site: unknown
|
DM2 patient, age 58, gender Female
|
Sample_geo_accession | GSM161963
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161963/suppl/GSM161963.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161964 | GPL570 |
|
DM2_M51_?_19
|
Skeletal Muscle
|
DM2 patient
biopsy site: unknown
|
DM2 patient, age 51, gender Male
|
Sample_geo_accession | GSM161964
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161964/suppl/GSM161964.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161965 | GPL570 |
|
DM2_F55_?_20
|
Skeletal Muscle
|
DM2 patient
biopsy site: unknown
|
DM2 patient, age 55, gender Female
|
Sample_geo_accession | GSM161965
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161965/suppl/GSM161965.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161966 | GPL570 |
|
N_F61_?_01
|
Skeletal Muscle
|
Normal Adult patient
biopsy site: unknown
|
Normal Adult patient, age 61, gender Female
|
Sample_geo_accession | GSM161966
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161966/suppl/GSM161966.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161967 | GPL570 |
|
N_M85_?_02
|
Skeletal Muscle
|
Normal Adult patient
biopsy site: unknown
|
Normal Adult patient, age 85, gender Male
|
Sample_geo_accession | GSM161967
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161967/suppl/GSM161967.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161968 | GPL570 |
|
N_M43_?_03
|
Skeletal Muscle
|
Normal Adult patient
biopsy site: unknown
|
Normal Adult patient, age 43, gender Male
|
Sample_geo_accession | GSM161968
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161968/suppl/GSM161968.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161969 | GPL570 |
|
N_M43_?_04
|
Skeletal Muscle
|
Normal Adult patient
biopsy site: unknown
|
Normal Adult patient, age 43, gender Male
|
Sample_geo_accession | GSM161969
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161969/suppl/GSM161969.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161970 | GPL570 |
|
N_M26_?_05
|
Skeletal Muscle
|
Normal Adult patient
biopsy site: unknown
|
Normal Adult patient, age 26, gender Male
|
Sample_geo_accession | GSM161970
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161970/suppl/GSM161970.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
GSM161971 | GPL570 |
|
N_MF43-46_?_06
|
Skeletal Muscle
|
Normal Adult patient
biopsy site: unknown
|
Normal Adult patients pool, age 43-46, gender Male/Female
|
Sample_geo_accession | GSM161971
| Sample_status | Public on Jan 28 2010
| Sample_submission_date | Feb 12 2007
| Sample_last_update_date | Mar 15 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | n/a
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
| Sample_hyb_protocol | standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
| Sample_scan_protocol | Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
| Sample_data_processing | from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
| Sample_platform_id | GPL570
| Sample_contact_name | Mario,,Sirito
| Sample_contact_email | msirito@mdanderson.org
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | M. D. Anderson Cancer Center
| Sample_contact_address | 1515 Holcombe blvd
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77030
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM161nnn/GSM161971/suppl/GSM161971.CEL.gz
| Sample_series_id | GSE7014
| Sample_data_row_count | 34174
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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