Search results for the GEO ID: GSE7101  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM169468 | GPL8300 |
|
P53(+),Ar(-),Rep#1
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(+), Non arsenite-treated, Replication 1
|
| Sample_geo_accession | GSM169468
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 19 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169468/suppl/GSM169468.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169468/suppl/GSM169468.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM169469 | GPL8300 |
|
P53(+),Ar(-),Rep#2
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(+), Non arsenite-treated, Replication 2
|
| Sample_geo_accession | GSM169469
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 19 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169469/suppl/GSM169469.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169469/suppl/GSM169469.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM169470 | GPL8300 |
|
P53(+),Ar(-),Rep#3
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(+), Non arsenite-treated, Replication 3
|
| Sample_geo_accession | GSM169470
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 19 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169470/suppl/GSM169470.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169470/suppl/GSM169470.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM169478 | GPL8300 |
|
P53(+),Ar(-),Rep#4
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(+), Non arsenite-treated, Replication 4
|
| Sample_geo_accession | GSM169478
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 19 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169478/suppl/GSM169478.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169478/suppl/GSM169478.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM169493 | GPL8300 |
|
P53(-),Ar(-),Rep#1
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(-), Non arsenite-treated, Replication 1
|
| Sample_geo_accession | GSM169493
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 19 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169493/suppl/GSM169493.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169493/suppl/GSM169493.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM169494 | GPL8300 |
|
P53(-),Ar(-),Rep#2
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(-), Non arsenite-treated, Replication 2
|
| Sample_geo_accession | GSM169494
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 19 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169494/suppl/GSM169494.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169494/suppl/GSM169494.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM169900 | GPL8300 |
|
P53(-),Ar(-),Rep#3
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(-), Non arsenite-treated, Replication 3
|
| Sample_geo_accession | GSM169900
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 20 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169900/suppl/GSM169900.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM169nnn/GSM169900/suppl/GSM169900.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM170247 | GPL8300 |
|
P53(-),Ar(-),Rep#4
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(-), Non arsenite-treated, Replication 4
|
| Sample_geo_accession | GSM170247
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 20 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170247/suppl/GSM170247.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170247/suppl/GSM170247.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM170255 | GPL8300 |
|
P53(+),Ar(+),Rep#1
|
Fibroblast explant cells from a Li-Fraumeni patient
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53(+), Arsenite-treated, Replication 1
|
| Sample_geo_accession | GSM170255
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 20 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170255/suppl/GSM170255.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170255/suppl/GSM170255.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM170256 | GPL8300 |
|
P53(+),Ar(+),Rep#2
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(+), Arsenite-treated, Replication 2
|
| Sample_geo_accession | GSM170256
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 20 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170256/suppl/GSM170256.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170256/suppl/GSM170256.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM170257 | GPL8300 |
|
P53(+),Ar(+),Rep#3
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(+), Arsenite-treated, Replication 3
|
| Sample_geo_accession | GSM170257
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 20 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170257/suppl/GSM170257.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170257/suppl/GSM170257.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM170598 | GPL8300 |
|
P53(+),Ar(+),Rep#4
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(+), Arsenite-treated, Replication 4
|
| Sample_geo_accession | GSM170598
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 20 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170598/suppl/GSM170598.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170598/suppl/GSM170598.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM170599 | GPL8300 |
|
P53(-),Ar(+),Rep#1
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(-), Arsenite-treated, Replication 1
|
| Sample_geo_accession | GSM170599
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 20 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170599/suppl/GSM170599.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170599/suppl/GSM170599.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM170714 | GPL8300 |
|
P53(-),Ar(+),Rep#2
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(-), Arsenite-treated, Replication 2
|
| Sample_geo_accession | GSM170714
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 21 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170714/suppl/GSM170714.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170714/suppl/GSM170714.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM170812 | GPL8300 |
|
P53(-),Ar(+),Rep#4
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(-), Arsenite-treated, Replication 4
|
| Sample_geo_accession | GSM170812
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 21 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170812/suppl/GSM170812.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170812/suppl/GSM170812.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
GSM170828 | GPL8300 |
|
P53(-),Ar(+),Rep#3
|
Fibroblast explant cells from a Li-Fraumeni patient
|
p53 deficient fibroblasts expressing p53 from a tet-off regulated contruct
|
p53(-), Arsenite-treated, Replication 3
|
| Sample_geo_accession | GSM170828
| | Sample_status | Public on Apr 07 2007
| | Sample_submission_date | Feb 21 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Extracted with oligo-dt cellulose using a Micro FastTrack Kit (Invitrogen)
| | Sample_label_ch1 | Biotin-labeled cRNA were stained with streptavidin phycoerythrin stain solution. Signal was amplified with goat anti-streptavidin antibody and biotinylated goat IgG (Affymetrix).
| | Sample_label_protocol_ch1 | We synthesized biotin-labeled cRNA with an ENZO RNA transcript labeling kit using 0.7 µg cDNA per reaction. cRNAs were purified with RNeasy purification columns (Qiagen).
| | Sample_hyb_protocol | cRNA, 15 µg per sample, was heated at 80ºC for 33 min in fragmentation buffer. Fragmented cRNAs were hybridized to U95Av2 GeneChips (Affymetrix) for 16 hr at 45ºC.
| | Sample_scan_protocol | We scanned stained GeneChips on an Agilent GeneArray Scanner (Agilent Technologies)
| | Sample_data_processing | GCOS, BioConductor/R
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Xiaoqiang,,Xu
| | Sample_contact_department | Department of Pharmacology & Toxicology
| | Sample_contact_institute | University of Louisville
| | Sample_contact_address | University of Louisville
| | Sample_contact_city | Louisville
| | Sample_contact_state | KY
| | Sample_contact_zip/postal_code | 40292
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170828/suppl/GSM170828.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM170nnn/GSM170828/suppl/GSM170828.CHP.gz
| | Sample_series_id | GSE7101
| | Sample_data_row_count | 12625
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
