Search results for the GEO ID: GSE7253 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM174806 | GPL1355 |
|
Kidney Cortex, 10 week old male rat, nondiabetic (Kidney_10WOM_ND_Rep1)
|
Kidney Cortex, 10 week old male rat, nondiabetic
|
Sprague Dawley rat, male, nondiabetic; studied from 4-10 weeks of age; kidney cortex
|
All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
|
Sample_geo_accession | GSM174806
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with vehicle at 4 weeks of age; palmitate vehicle pellet placed 3 days later; ad lib food and water
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174806/suppl/GSM174806.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174806/suppl/GSM174806.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
| |
|
GSM174807 | GPL1355 |
|
Kidney Cortex, 10 week old male rat, nondiabetic (Kidney_10WOM_ND_Rep2)
|
Kidney Cortex, 10 week old male rat, nondiabetic
|
Sprague Dawley rat, male, nondiabetic; studied from 4-10 weeks of age; kidney cortex
|
All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
|
Sample_geo_accession | GSM174807
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with vehicle at 4 weeks of age; palmitate vehicle pellet placed 3 days later; ad lib food and water
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174807/suppl/GSM174807.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174807/suppl/GSM174807.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
| |
|
GSM174808 | GPL1355 |
|
Kidney Cortex, 10 week old male rat, nondiabetic (Kidney_10WOM_ND_Rep3)
|
Kidney Cortex, 10 week old male rat, nondiabetic
|
Sprague Dawley rat, male, nondiabetic; studied from 4-10 weeks of age; kidney cortex
|
All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
|
Sample_geo_accession | GSM174808
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with vehicle at 4 weeks of age; palmitate vehicle pellet placed 3 days later; ad lib food and water
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174808/suppl/GSM174808.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174808/suppl/GSM174808.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
| |
|
GSM174809 | GPL1355 |
|
Kidney Cortex, 10 week old male rat, diabetic (Kidney_10WOM_DM_Rep1)
|
Kidney Cortex, 10 week old male rat, diabetic
|
Sprague Dawley rat, male, diabetic from 4-10 weeks of age; kidney cortex
|
All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
|
Sample_geo_accession | GSM174809
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with streptozocin, 65 mg/kg iv, at 4 weeks of age; insulin palmitate vehicle pellet placed 3 days later; ad lib food and water; blood glucose 350-450 mg/dl for 6 weeks
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174809/suppl/GSM174809.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174809/suppl/GSM174809.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
| |
|
GSM174810 | GPL1355 |
|
Kidney Cortex, 10 week old male rat, diabetic (Kidney_10WOM_DM_Rep2)
|
Kidney Cortex, 10 week old male rat, diabetic
|
Sprague Dawley rat, male, diabetic from 4-10 weeks of age; kidney cortex
|
All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
|
Sample_geo_accession | GSM174810
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with streptozocin, 65 mg/kg iv, at 4 weeks of age; insulin palmitate pellet placed 3 days later; ad lib food and water; blood glucose 350-450 mg/dl for 6 weeks
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174810/suppl/GSM174810.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174810/suppl/GSM174810.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
| |
|
GSM174811 | GPL1355 |
|
Kidney Cortex, 10 week old male rat, diabetic (Kidney_10WOM_DM_Rep3)
|
Kidney Cortex, 10 week old male rat, diabetic
|
Sprague Dawley rat, male, diabetic from 4-10 weeks of age; kidney cortex
|
All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
|
Sample_geo_accession | GSM174811
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with streptozocin, 65 mg/kg iv, at 4 weeks of age; insulin palmitate pellet placed 3 days later; ad lib food and water; blood glucose 350-450 mg/dl for 6 weeks
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174811/suppl/GSM174811.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174811/suppl/GSM174811.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
| |
|
GSM174812 | GPL1355 |
|
Kidney Cortex, 20 week old male rat, nondiabetic (Kidney_20WOM_ND_Rep1)
|
Kidney Cortex, 20 week old male rat, nondiabetic
|
Sprague Dawley rat, male, nondiabetic; studied from 14-20 weeks of age; kidney cortex
|
All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
|
Sample_geo_accession | GSM174812
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with vehicle at 14 weeks of age; palmitate vehicle pellet placed 3 days later; ad lib food and water
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174812/suppl/GSM174812.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174812/suppl/GSM174812.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
| |
|
GSM174813 | GPL1355 |
|
Kidney Cortex, 20 week old male rat, nondiabetic (Kidney_20WOM_ND_Rep2)
|
Kidney Cortex, 20 week old male rat, nondiabetic
|
Sprague Dawley rat, male, nondiabetic; studied from 14-20 weeks of age; kidney cortex
|
All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
|
Sample_geo_accession | GSM174813
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with vehicle at 14 weeks of age; palmitate vehicle pellet placed 3 days later; ad lib food and water
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174813/suppl/GSM174813.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174813/suppl/GSM174813.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
| |
|
GSM174814 | GPL1355 |
|
Kidney Cortex, 20 week old male rat, nondiabetic (Kidney_20WOM_ND_Rep3)
|
Kidney Cortex, 20 week old male rat, nondiabetic
|
Sprague Dawley rat, male, nondiabetic; studied from 14-20 weeks of age; kidney cortex
|
All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
|
Sample_geo_accession | GSM174814
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with vehicle at 14 weeks of age; palmitate vehicle pellet placed 3 days later; ad lib food and water
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174814/suppl/GSM174814.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174814/suppl/GSM174814.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
| |
|
GSM174815 | GPL1355 |
|
Kidney Cortex, 20 week old male rat, diabetic (Kidney_20WOM_DM_Rep1)
|
Kidney Cortex, 20 week old male rat, diabetic
|
Sprague Dawley rat, male, diabetic from 14-20 weeks of age; kidney cortex
|
All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
|
Sample_geo_accession | GSM174815
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with streptozocin, 65 mg/kg iv, at 14 weeks of age; insulin palmitate pellet placed 3 days later; ad lib food and water; blood glucose 350-450 mg/dl for 6 weeks
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174815/suppl/GSM174815.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174815/suppl/GSM174815.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
| |
|
GSM174816 | GPL1355 |
|
Kidney Cortex, 20 week old male rat, diabetic (Kidney_20WOM_DM_Rep2)
|
Kidney Cortex, 20 week old male rat, diabetic
|
Sprague Dawley rat, male, diabetic from 14-20 weeks of age; kidney cortex
|
All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
|
Sample_geo_accession | GSM174816
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with streptozocin, 65 mg/kg iv, at 14 weeks of age; insulin palmitate pellet placed 3 days later; ad lib food and water; blood glucose 350-450 mg/dl for 6 weeks
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174816/suppl/GSM174816.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174816/suppl/GSM174816.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
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GSM174817 | GPL1355 |
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Kidney Cortex, 20 week old male rat, diabetic (Kidney_20WOM_DM_Rep3)
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Kidney Cortex, 20 week old male rat, diabetic
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Sprague Dawley rat, male, diabetic from 14-20 weeks of age; kidney cortex
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All labeling, hybridization, and scanning were performed in the microarray core facility of the University of Nebraska Medical Center
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Sample_geo_accession | GSM174817
| Sample_status | Public on Sep 30 2007
| Sample_submission_date | Mar 13 2007
| Sample_last_update_date | Mar 13 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Pascale H Lane
| Sample_treatment_protocol_ch1 | Injected with streptozocin, 65 mg/kg iv, at 14 weeks of age; insulin palmitate pellet placed 3 days later; ad lib food and water; blood glucose 350-450 mg/dl for 6 weeks
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Aurum Total RNA Mini Kit (BioRAd Laboratories, Hercules, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | cRNA probes were biotinylated in a core facility
| Sample_hyb_protocol | Per Affymetrix instructions
| Sample_scan_protocol | GeneChip Scanner 3,000 6G per Affymetrix instructions
| Sample_data_processing | Images were analyzed using GCOS imaging software. Quality metric parameters including noise level, background, and the efficiency of reverse transcription were ascertained for all hybridizations. Data sets passing the stringent quality recommendations were normalized using the GCOS software, and the raw intensity values exported for further analysis
| Sample_platform_id | GPL1355
| Sample_contact_name | Pascale,Hammond,Lane
| Sample_contact_email | phlane@unmc.edu
| Sample_contact_phone | 402-559-6055
| Sample_contact_fax | 402-559-8033
| Sample_contact_laboratory | DRC 6032
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Nebraska
| Sample_contact_address | 982169 Nebraska Medical Center
| Sample_contact_city | Omaha
| Sample_contact_state | NE
| Sample_contact_zip/postal_code | 68198-2169
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174817/suppl/GSM174817.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM174nnn/GSM174817/suppl/GSM174817.CHP.gz
| Sample_series_id | GSE7253
| Sample_data_row_count | 31099
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