Search results for the GEO ID: GSE7377  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM177446 | GPL1352 |
|
Hyperplastic enlarged lobular units (S04-0280-HELU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177446
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177446/suppl/GSM177446.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177446/suppl/GSM177446.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177447 | GPL1352 |
|
Hyperplastic enlarged lobular units (S04-2376-A01-HELU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177447
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177447/suppl/GSM177447.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177447/suppl/GSM177447.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177448 | GPL1352 |
|
Hyperplastic enlarged lobular units (S04-2412-HELU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177448
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177448/suppl/GSM177448.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177448/suppl/GSM177448.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177449 | GPL1352 |
|
Hyperplastic enlarged lobular units (S04-6016-HELU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177449
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177449/suppl/GSM177449.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177449/suppl/GSM177449.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177450 | GPL1352 |
|
Hyperplastic enlarged lobular units (S04-11578-HELU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177450
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177450/suppl/GSM177450.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177450/suppl/GSM177450.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177451 | GPL1352 |
|
Hyperplastic enlarged lobular units (S04-21945-HELU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177451
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177451/suppl/GSM177451.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177451/suppl/GSM177451.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177452 | GPL1352 |
|
Hyperplastic enlarged lobular units (S04-25290-HELU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177452
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177452/suppl/GSM177452.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177452/suppl/GSM177452.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177453 | GPL1352 |
|
Hyperplastic enlarged lobular units (S04-80568-A2-HELU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177453
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177453/suppl/GSM177453.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177453/suppl/GSM177453.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177454 | GPL1352 |
|
Terminal duct lobular units (S04-0280-TDLU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177454
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177454/suppl/GSM177454.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177454/suppl/GSM177454.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177455 | GPL1352 |
|
Terminal duct lobular units (S04-2376-TDLU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177455
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177455/suppl/GSM177455.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177455/suppl/GSM177455.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177456 | GPL1352 |
|
Terminal duct lobular units (S04-2412-TDLU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177456
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177456/suppl/GSM177456.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177456/suppl/GSM177456.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177457 | GPL1352 |
|
Terminal duct lobular units (S04-6016-TDLU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177457
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177457/suppl/GSM177457.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177457/suppl/GSM177457.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177458 | GPL1352 |
|
Terminal duct lobular units (S04-11578-TDLU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177458
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177458/suppl/GSM177458.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177458/suppl/GSM177458.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177459 | GPL1352 |
|
Terminal duct lobular units (S04-21945-TDLU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177459
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177459/suppl/GSM177459.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177459/suppl/GSM177459.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177460 | GPL1352 |
|
Terminal duct lobular units (S04-25290-TDLU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177460
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177460/suppl/GSM177460.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177460/suppl/GSM177460.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
GSM177461 | GPL1352 |
|
Terminal duct lobular units (S04-80568-A5-TDLU)
|
non-cancerous adult female human breast
|
Formalin-fixed paraffin-embedded tissue (FFPET) biopsies containing paired normal TDLUs and well-developed HELUs from non-cancerous adult female human breasts obtained within the past 3 years
|
Gene expression data from benign hyperplastic breast epithelial cells
|
| Sample_geo_accession | GSM177461
| | Sample_status | Public on Mar 28 2007
| | Sample_submission_date | Mar 27 2007
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using the Optimum Kit, which is based on proteinase K digestion followed by phase separation in a proprietary micro-filter cartridge and incubation with DNase to remove contaminating genomic DNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The cDNA was in vitro transcribed to biotin-labeled cRNA using IVT Labeling Kit.
| | Sample_hyb_protocol | Following fragmentation, 20 mg cRNA were hybridized to the microarrays for 16 hours at 45C.
| | Sample_scan_protocol | The chips were washed in a fluidic station and the phycoerythrin-stained array was scanned as a digital image file as described in the Affymetrix GeneChip protocol
| | Sample_data_processing | Data was processed and analyzed with GCOS 1.2 using affymetrix default settings.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177461/suppl/GSM177461.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM177nnn/GSM177461/suppl/GSM177461.CHP.gz
| | Sample_series_id | GSE7377
| | Sample_data_row_count | 61359
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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