Search results for the GEO ID: GSE7462  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM180603 | GPL570 |
|
CP10BA_subject 10
|
healthy human subject
|
dose=200
time=0hr
|
Gene expression data from subject at time 0h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180603
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180603/suppl/GSM180603.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180604 | GPL570 |
|
CP10BC_subject 10
|
healthy human subject 4h exposed to 200ug diesel exhaust
|
dose=200
time=4hr
|
Gene expression data from subject at time 4h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180604
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180604/suppl/GSM180604.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180605 | GPL570 |
|
CP10CA_subject 10
|
healthy human subject
|
dose=0
time=0hr
|
Gene expression data from subject at time 0h exposed to filtered air
|
| Sample_geo_accession | GSM180605
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180605/suppl/GSM180605.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180606 | GPL570 |
|
CP10CC_subject 10
|
healthy human subject 4h exposed to filtered air
|
dose=0
time=4hr
|
Gene expression data from subject at time 4h exposed to filtered air
|
| Sample_geo_accession | GSM180606
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180606/suppl/GSM180606.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180607 | GPL570 |
|
CP16AA_subject 16
|
healthy human subject
|
dose=200
time=0hr
|
Gene expression data from subject at time 0h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180607
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180607/suppl/GSM180607.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180608 | GPL570 |
|
CP16AC_subject 16
|
healthy human subject 4h exposed to 200ug diesel exhaust
|
dose=200
time=4hr
|
Gene expression data from subject at time 4h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180608
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180608/suppl/GSM180608.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180609 | GPL570 |
|
CP16AD_subject 16
|
healthy human subject 22h exposed to 200ug diesel exhaust
|
dose=200
time=22hr
|
Gene expression data from subject at time 22h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180609
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180609/suppl/GSM180609.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180610 | GPL570 |
|
CP16BA_subject 16
|
healthy human subject
|
dose=0
time=0hr
|
Gene expression data from subject at time 0h exposed to filtered air
|
| Sample_geo_accession | GSM180610
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180610/suppl/GSM180610.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180611 | GPL570 |
|
CP16BC_subject 16
|
healthy human subject 4h exposed to filtered air
|
dose=0
time=4hr
|
Gene expression data from subject at time 4h exposed to filtered air
|
| Sample_geo_accession | GSM180611
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180611/suppl/GSM180611.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180612 | GPL570 |
|
CP16BD_subject 16
|
healthy human subject 22h exposed to filtered air
|
dose=0
time=22hr
|
Gene expression data from subject at time 22h exposed to filtered air
|
| Sample_geo_accession | GSM180612
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180612/suppl/GSM180612.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180613 | GPL570 |
|
CP18AA_subject 18
|
healthy human subject
|
dose=200
time=0hr
|
Gene expression data from subject at time 0h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180613
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180613/suppl/GSM180613.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180614 | GPL570 |
|
CP18AC_subject 18
|
healthy human subject 4h exposed to 200ug diesel exhaust
|
dose=200
time=4hr
|
Gene expression data from subject at time 4h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180614
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180614/suppl/GSM180614.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180615 | GPL570 |
|
CP18AD_subject 18
|
healthy human subject 22h exposed to 200ug diesel exhaust
|
dose=200
time=22hr
|
Gene expression data from subject at time 22h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180615
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180615/suppl/GSM180615.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180616 | GPL570 |
|
CP29AA_subject 29
|
healthy human subject
|
dose=200
time=0hr
|
Gene expression data from subject at time 0h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180616
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180616/suppl/GSM180616.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180617 | GPL570 |
|
CP29AC_subject 29
|
healthy human subject 4h exposed to 200ug diesel exhaust
|
dose=200
time=4hr
|
Gene expression data from subject at time 4h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180617
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180617/suppl/GSM180617.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180618 | GPL570 |
|
CP29AD_subject 29
|
healthy human subject 22h exposed to 200ug diesel exhaust
|
dose=200
time=22hr
|
Gene expression data from subject at time 22h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180618
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180618/suppl/GSM180618.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180619 | GPL570 |
|
CP29BA_subject 29
|
healthy human subject
|
dose=0
time=0hr
|
Gene expression data from subject at time 0h exposed to filtered air
|
| Sample_geo_accession | GSM180619
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180619/suppl/GSM180619.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180620 | GPL570 |
|
CP29BC_subject 29
|
healthy human subject 4h exposed to filtered air
|
dose=0
time=4hr
|
Gene expression data from subject at time 4h exposed to filtered air
|
| Sample_geo_accession | GSM180620
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180620/suppl/GSM180620.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180621 | GPL570 |
|
CP29BD_subject 29
|
healthy human subject 22h exposed to filtered air
|
dose=0
time=22hr
|
Gene expression data from subject at time 22h exposed to filtered air
|
| Sample_geo_accession | GSM180621
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180621/suppl/GSM180621.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180622 | GPL570 |
|
CP35BA_subject 35
|
healthy human subject
|
dose=0
time=0hr
|
Gene expression data from subject at time 0h exposed to filtered air
|
| Sample_geo_accession | GSM180622
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180622/suppl/GSM180622.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180623 | GPL570 |
|
CP35BC_subject 35
|
healthy human subject 4h exposed to filtered air
|
dose=0
time=4hr
|
Gene expression data from subject at time 4h exposed to filtered air
|
| Sample_geo_accession | GSM180623
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180623/suppl/GSM180623.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180624 | GPL570 |
|
CP35CA_subject 35
|
healthy human subject
|
dose=200
time=0hr
|
Gene expression data from subject at time 0h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180624
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180624/suppl/GSM180624.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
GSM180625 | GPL570 |
|
CP35CC_subject 35
|
healthy human subject 4h exposed to 200ug diesel exhaust
|
dose=200
time=4hr
|
Gene expression data from subject at time 4h exposed to 200ug diesel exhaust
|
| Sample_geo_accession | GSM180625
| | Sample_status | Public on Jan 03 2008
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Jan 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Residual phenol were removed using Qiagen's spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix two-cycle protocol from 50ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 scanner
| | Sample_data_processing | The data were analyzed with BioConductor GCRMA using the gcrma package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Richard,,Beyer
| | Sample_contact_email | dbeyer@u.washington.edu
| | Sample_contact_phone | 206-616-7378
| | Sample_contact_laboratory | Center for Ecogenetics and Environmental Health
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 4225 Roosevelt Way, NE, Suite 100
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180625/suppl/GSM180625.CEL.gz
| | Sample_series_id | GSE7462
| | Sample_data_row_count | 54613
| | |
|
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