Search results for the GEO ID: GSE7463  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM180626 | GPL8300 |
|
Adenoma patient 125
|
Adenoma patient 125
|
benign
Histology:Serous cystadenoma
Stage:na
Age at surgery: 61
|
Gene expression data from ovarian adenoma.
|
| Sample_geo_accession | GSM180626
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180626/suppl/GSM180626.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180627 | GPL8300 |
|
Adenoma patient 132
|
Adenoma patient 132
|
benign
Histology:Serous cystadenoma
Stage:na
Age at surgery: 47
|
Gene expression data from ovarian adenoma.
|
| Sample_geo_accession | GSM180627
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180627/suppl/GSM180627.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180628 | GPL8300 |
|
Adenoma patient 146
|
Adenoma patient 146
|
benign
Histology:Simple cystadenoma
Stage:na
Age at surgery: 70
|
Gene expression data from ovarian adenoma.
|
| Sample_geo_accession | GSM180628
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180628/suppl/GSM180628.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180629 | GPL8300 |
|
Adenoma patient 159
|
Adenoma patient 159
|
benign
Histology:Simple cystadenoma
Stage:na
Age at surgery: 74
|
Gene expression data from ovarian adenoma.
|
| Sample_geo_accession | GSM180629
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180629/suppl/GSM180629.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180630 | GPL8300 |
|
Adenoma patient 172
|
Adenoma patient 172
|
benign
Histology:Simple cystadenoma
Stage:na
Age at surgery: 61
|
Gene expression data from ovarian adenoma.
|
| Sample_geo_accession | GSM180630
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180630/suppl/GSM180630.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180631 | GPL8300 |
|
Adenoma patient 221
|
Adenoma patient 221
|
benign
Histology:Simple cystadenoma
Stage:na
Age at surgery: 67
|
Gene expression data from ovarian adenoma.
|
| Sample_geo_accession | GSM180631
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180631/suppl/GSM180631.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180632 | GPL8300 |
|
Adenoma patient 300
|
Adenoma patient 300
|
benign
Histology:Serous cystadenofibroma
Stage:na
Age at surgery: 71
|
Gene expression data from ovarian adenoma.
|
| Sample_geo_accession | GSM180632
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180632/suppl/GSM180632.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180633 | GPL8300 |
|
Adenoma patient 64
|
Adenoma patient 64
|
benign
Histology:Simple cystadenoma
Stage:na
Age at surgery: 71
|
Gene expression data from ovarian adenoma.
|
| Sample_geo_accession | GSM180633
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180633/suppl/GSM180633.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180634 | GPL8300 |
|
Adenoma patient 77A
|
Adenoma patient 77A
|
benign
Histology:Simple cystadenoma
Stage:na
Age at surgery: 51
|
Gene expression data from ovarian adenoma.
|
| Sample_geo_accession | GSM180634
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180634/suppl/GSM180634.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180635 | GPL8300 |
|
Adenoma patient 97
|
Adenoma patient 97
|
benign
Histology:Serous cystadenofibroma
Stage:na
Age at surgery: 61
|
Gene expression data from ovarian adenoma.
|
| Sample_geo_accession | GSM180635
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180635/suppl/GSM180635.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180636 | GPL8300 |
|
Carcinoma patient 183
|
Carcinoma patient 183
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:III/2
Age at surgery: 66
|
Gene expression data from ovarian carcinoma.
|
| Sample_geo_accession | GSM180636
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180636/suppl/GSM180636.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180637 | GPL8300 |
|
Carcinoma patient 196
|
Carcinoma patient 196
|
invasive malignant
Histology:Endometriod adenocarcinoma
Stage:III/2
Age at surgery: 45
|
Gene expression data from ovarian carcinoma.
|
| Sample_geo_accession | GSM180637
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180637/suppl/GSM180637.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180638 | GPL8300 |
|
Carcinoma patient 2
|
Carcinoma patient 2
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:Iib/3
Age at surgery: 61
|
Gene expression data from ovarian carcinoma.
|
| Sample_geo_accession | GSM180638
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180638/suppl/GSM180638.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180639 | GPL8300 |
|
Carcinoma patient 204
|
Carcinoma patient 204
|
invasive malignant
Histology:Endometriod adenocarcinoma
Stage:Ic/3
Age at surgery: 47
|
Gene expression data from ovarian carcinoma.
|
| Sample_geo_accession | GSM180639
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180639/suppl/GSM180639.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180640 | GPL8300 |
|
Carcinoma patient 212
|
Carcinoma patient 212
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIc/3
Age at surgery: 59
|
Gene expression data from ovarian carcinoma.
|
| Sample_geo_accession | GSM180640
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180640/suppl/GSM180640.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180641 | GPL8300 |
|
Carcinoma patient 23
|
Carcinoma patient 23
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIa/3
Age at surgery: 51
|
Gene expression data from ovarian carcinoma.
|
| Sample_geo_accession | GSM180641
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180641/suppl/GSM180641.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180642 | GPL8300 |
|
Carcinoma patient 4
|
Carcinoma patient 4
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIb/3
Age at surgery: 48
|
Gene expression data from ovarian carcinoma.
|
| Sample_geo_accession | GSM180642
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180642/suppl/GSM180642.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180643 | GPL8300 |
|
Carcinoma patient 66
|
Carcinoma patient 66
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IV/3
Age at surgery: 74
|
Gene expression data from ovarian carcinoma.
|
| Sample_geo_accession | GSM180643
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180643/suppl/GSM180643.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180644 | GPL8300 |
|
Carcinoma patient 99
|
Carcinoma patient 99
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:III/3
Age at surgery: 75
|
Gene expression data from ovarian carcinoma.
|
| Sample_geo_accession | GSM180644
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180644/suppl/GSM180644.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180645 | GPL8300 |
|
Cancer Chemo patient 150
|
Cancer Chemo patient 150
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIc/3
Age at surgery: 65
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180645
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180645/suppl/GSM180645.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180646 | GPL8300 |
|
Cancer Chemo patient 184
|
Cancer Chemo patient 184
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:III/3
Age at surgery: 67
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180646
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180646/suppl/GSM180646.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180647 | GPL8300 |
|
Cancer Chemo patient 187
|
Cancer Chemo patient 187
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIc/2
Age at surgery: 53
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180647
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180647/suppl/GSM180647.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180648 | GPL8300 |
|
Cancer Chemo patient 199
|
Cancer Chemo patient 199
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIc/3
Age at surgery: 69
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180648
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180648/suppl/GSM180648.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180649 | GPL8300 |
|
Cancer Chemo patient 253
|
Cancer Chemo patient 253
|
invasive malignant
Histology:Endometriod adenocarcinoma
Stage:IIIc/3
Age at surgery: 56
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180649
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180649/suppl/GSM180649.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180650 | GPL8300 |
|
Cancer Chemo patient 255
|
Cancer Chemo patient 255
|
invasive malignant
Histology:Undifferentiated carcinoma
Stage:IIIc/2
Age at surgery: 57
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180650
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180650/suppl/GSM180650.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180651 | GPL8300 |
|
Cancer Chemo patient 259
|
Cancer Chemo patient 259
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIb/3
Age at surgery: 58
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180651
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180651/suppl/GSM180651.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180652 | GPL8300 |
|
Cancer Chemo patient 269
|
Cancer Chemo patient 269
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIc/3
Age at surgery: 68
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180652
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180652/suppl/GSM180652.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180653 | GPL8300 |
|
Cancer Chemo patient 272
|
Cancer Chemo patient 272
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIb/2
Age at surgery: 83
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180653
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180653/suppl/GSM180653.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180654 | GPL8300 |
|
Cancer Chemo patient 279
|
Cancer Chemo patient 279
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIb/3
Age at surgery: 62
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180654
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180654/suppl/GSM180654.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180655 | GPL8300 |
|
Cancer Chemo patient 286
|
Cancer Chemo patient 286
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIc/2
Age at surgery: 52
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180655
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180655/suppl/GSM180655.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180656 | GPL8300 |
|
Cancer Chemo patient 29
|
Cancer Chemo patient 29
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:III/3
Age at surgery: 66
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180656
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180656/suppl/GSM180656.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180657 | GPL8300 |
|
Cancer Chemo patient 303
|
Cancer Chemo patient 303
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIc/3
Age at surgery: 44
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180657
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180657/suppl/GSM180657.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180658 | GPL8300 |
|
Cancer Chemo patient 310
|
Cancer Chemo patient 310
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IV/2
Age at surgery: 41
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180658
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180658/suppl/GSM180658.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180659 | GPL8300 |
|
Cancer Chemo patient 311
|
Cancer Chemo patient 311
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIc/2
Age at surgery: 51
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180659
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180659/suppl/GSM180659.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180660 | GPL8300 |
|
Cancer Chemo patient 312
|
Cancer Chemo patient 312
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIc/2
Age at surgery: 64
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180660
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180660/suppl/GSM180660.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180661 | GPL8300 |
|
Cancer Chemo patient 314
|
Cancer Chemo patient 314
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:III/2
Age at surgery: 79
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180661
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180661/suppl/GSM180661.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180662 | GPL8300 |
|
Cancer Chemo patient 325
|
Cancer Chemo patient 325
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:II/2
Age at surgery: 75
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180662
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180662/suppl/GSM180662.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180663 | GPL8300 |
|
Cancer Chemo patient 326
|
Cancer Chemo patient 326
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IV/3
Age at surgery: 72
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180663
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180663/suppl/GSM180663.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180664 | GPL8300 |
|
Cancer Chemo patient 338
|
Cancer Chemo patient 338
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIc/3
Age at surgery: 62
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180664
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180664/suppl/GSM180664.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180665 | GPL8300 |
|
Cancer Chemo patient 36
|
Cancer Chemo patient 36
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:III/3
Age at surgery:66
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180665
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180665/suppl/GSM180665.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180666 | GPL8300 |
|
Cancer Chemo patient 76
|
Cancer Chemo patient 76
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIa/2
Age at surgery:49
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180666
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180666/suppl/GSM180666.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180667 | GPL8300 |
|
Cancer Chemo patient 9
|
Cancer Chemo patient 9
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IV/2
Age at surgery:51
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180667
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180667/suppl/GSM180667.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
GSM180668 | GPL8300 |
|
Cancer Chemo patient 94
|
Cancer Chemo patient 94
|
invasive malignant
Histology:Serous papillary adenocarcinoma
Stage:IIIc/1
Age at surgery:55
|
Gene expression data from ovarian cancer patient pre-treated with cancer chemotherapy.
|
| Sample_geo_accession | GSM180668
| | Sample_status | Public on May 31 2007
| | Sample_submission_date | Apr 05 2007
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Linear polyacrylamide (5 ul) was added to ~50 mg of tumor sample and homogenization was carried out on ice in 1.5 ml Trizol (Invitrogen, Carlsbad, CA) with a polytron homogenizer for 30 seconds.
| | Sample_growth_protocol_ch1 | A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated from crude homogenate according to the manufacturer’s protocols (Trizol) and further enriched using an RNEasy column (Qiagen, Valencia, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray Scanner Model G2500
| | Sample_data_processing | The data were analyzed using GCRMA normalization with GeneTraffic Software (Iobion, La Jolla, CA).
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Nathan,J.,Bowen
| | Sample_contact_email | nathan.bowen@biology.gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Drive, #333
| | Sample_contact_city | Atlanta
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM180nnn/GSM180668/suppl/GSM180668.CEL.gz
| | Sample_series_id | GSE7463
| | Sample_data_row_count | 12625
| | |
|
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