Search results for the GEO ID: GSE7562  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM183432 | GPL570 |
|
A431 WT 1
|
epidermoid carcinoma, cell line
|
ATCC CRL-1555
|
control
|
| Sample_geo_accession | GSM183432
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183432/suppl/GSM183432.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183432/suppl/GSM183432.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
| | |
|
GSM183433 | GPL570 |
|
A431 WT 2
|
epidermoid carcinoma, cell line
|
ATCC CRL-1555
|
control
|
| Sample_geo_accession | GSM183433
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183433/suppl/GSM183433.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183433/suppl/GSM183433.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
| | |
|
GSM183434 | GPL570 |
|
A431 PR 1
|
epidermoid carcinoma, cell line
|
ATCC CRL-1555
|
PTEN RNAi
|
| Sample_geo_accession | GSM183434
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183434/suppl/GSM183434.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183434/suppl/GSM183434.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
| | |
|
GSM183435 | GPL570 |
|
A431 PR 2
|
epidermoid carcinoma, cell line
|
ATCC CRL-1555
|
PTEN RNAi
|
| Sample_geo_accession | GSM183435
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183435/suppl/GSM183435.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183435/suppl/GSM183435.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
| | |
|
GSM183436 | GPL570 |
|
HCC827 WT 1
|
lung adenocarcinoma, cell line
|
ATCC CRL-2868
|
control
|
| Sample_geo_accession | GSM183436
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183436/suppl/GSM183436.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183436/suppl/GSM183436.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
| | |
|
GSM183437 | GPL570 |
|
HCC827 WT 2
|
lung adenocarcinoma, cell line
|
ATCC CRL-2868
|
control
|
| Sample_geo_accession | GSM183437
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183437/suppl/GSM183437.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183437/suppl/GSM183437.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
| | |
|
GSM183438 | GPL570 |
|
HCC827 PR 1
|
lung adenocarcinoma, cell line
|
ATCC CRL-2868
|
PTEN RNAi
|
| Sample_geo_accession | GSM183438
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183438/suppl/GSM183438.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183438/suppl/GSM183438.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
| | |
|
GSM183439 | GPL570 |
|
HCC827 PR 2
|
lung adenocarcinoma, cell line
|
ATCC CRL-2868
|
PTEN RNAi
|
| Sample_geo_accession | GSM183439
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183439/suppl/GSM183439.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183439/suppl/GSM183439.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
| | |
|
GSM183440 | GPL570 |
|
SKBR3 WT 1
|
breast adenocarcinoma, cell line
|
ATCC HTB-30
|
control
|
| Sample_geo_accession | GSM183440
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183440/suppl/GSM183440.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183440/suppl/GSM183440.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
| | |
|
GSM183441 | GPL570 |
|
SKBR3 WT 2
|
breast adenocarcinoma, cell line
|
ATCC HTB-30
|
control
|
| Sample_geo_accession | GSM183441
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183441/suppl/GSM183441.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183441/suppl/GSM183441.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
| | |
|
GSM183442 | GPL570 |
|
SKBR3 PR 1
|
breast adenocarcinoma, cell line
|
ATCC HTB-30
|
PTEN RNAi
|
| Sample_geo_accession | GSM183442
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183442/suppl/GSM183442.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183442/suppl/GSM183442.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
| | |
|
GSM183443 | GPL570 |
|
SKBR3 PR 2
|
breast adenocarcinoma, cell line
|
ATCC HTB-30
|
PTEN RNAi
|
| Sample_geo_accession | GSM183443
| | Sample_status | Public on Jun 01 2007
| | Sample_submission_date | Apr 20 2007
| | Sample_last_update_date | Apr 20 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cell were grown to log phase prior to RNA extraction in DMEM media containing 10% fetal bovine serum, L-glutamine and penicillin/streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | see Affymetrix expression manual, section 2
| | Sample_hyb_protocol | GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | GCOS 1.3 was used to convert intensities using Expression Analysis settings :Parameters -default, Baseline - default, Probemask - default, Normalization - all probe sets, Scaling - all probe sets, Target Signal: 2500
| | Sample_platform_id | GPL570
| | Sample_contact_name | Igor,,Vivanco
| | Sample_contact_email | ivivanco@ucla.edu
| | Sample_contact_phone | (310) 825 1205
| | Sample_contact_fax | (310) 206 8975
| | Sample_contact_laboratory | Mellinghoff
| | Sample_contact_department | Mol. & Md. Pharmacology
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 700 Westwood plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183443/suppl/GSM183443.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183443/suppl/GSM183443.CHP.gz
| | Sample_series_id | GSE7562
| | Sample_data_row_count | 54675
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