Search results for the GEO ID: GSE7621  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM184354 | GPL570 |
|
Substantia nigra normal rep1
|
Postmortem human substantia nigra
|
Old Control
female
|
Gene expression data of substantia nigra from postmortem brain of normal controls
|
| Sample_geo_accession | GSM184354
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184354/suppl/GSM184354.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184354/suppl/GSM184354.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184355 | GPL570 |
|
Substantia nigra normal rep2
|
Postmortem human substantia nigra
|
Old Control
male
|
Gene expression data of substantia nigra from postmortem brain of normal controls
|
| Sample_geo_accession | GSM184355
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184355/suppl/GSM184355.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184355/suppl/GSM184355.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184356 | GPL570 |
|
Substantia nigra normal rep3
|
Postmortem human substantia nigra
|
Old Control
female
|
Gene expression data of substantia nigra from postmortem brain of normal controls
|
| Sample_geo_accession | GSM184356
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184356/suppl/GSM184356.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184356/suppl/GSM184356.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184357 | GPL570 |
|
Substantia nigra normal rep4
|
Postmortem human substantia nigra
|
Old Control
female
|
Gene expression data of substantia nigra from postmortem brain of normal controls
|
| Sample_geo_accession | GSM184357
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184357/suppl/GSM184357.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184357/suppl/GSM184357.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184358 | GPL570 |
|
Substantia nigra normal rep5
|
Postmortem human substantia nigra
|
Old Control
female
|
Gene expression data of substantia nigra from postmortem brain of normal controls
|
| Sample_geo_accession | GSM184358
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184358/suppl/GSM184358.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184358/suppl/GSM184358.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184359 | GPL570 |
|
Substantia nigra normal rep6
|
Postmortem human substantia nigra
|
Old Control
female
|
Gene expression data of substantia nigra from postmortem brain of normal controls
|
| Sample_geo_accession | GSM184359
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184359/suppl/GSM184359.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184359/suppl/GSM184359.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184360 | GPL570 |
|
Substantia nigra normal rep7
|
Postmortem human substantia nigra
|
Old Control
male
|
Gene expression data of substantia nigra from postmortem brain of normal controls
|
| Sample_geo_accession | GSM184360
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184360/suppl/GSM184360.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184360/suppl/GSM184360.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184361 | GPL570 |
|
Substantia nigra normal rep8
|
Postmortem human substantia nigra
|
Old Control
male
|
Gene expression data of substantia nigra from postmortem brain of normal controls
|
| Sample_geo_accession | GSM184361
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184361/suppl/GSM184361.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184361/suppl/GSM184361.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184362 | GPL570 |
|
Substantia nigra normal rep9
|
Postmortem human substantia nigra
|
Old Control
male
|
Gene expression data of substantia nigra from postmortem brain of normal controls
|
| Sample_geo_accession | GSM184362
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184362/suppl/GSM184362.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184362/suppl/GSM184362.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184363 | GPL570 |
|
Substantia nigra PD rep1
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184363
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184363/suppl/GSM184363.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184363/suppl/GSM184363.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184364 | GPL570 |
|
Substantia nigra PD rep2
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184364
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184364/suppl/GSM184364.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184364/suppl/GSM184364.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184365 | GPL570 |
|
Substantia nigra PD rep3
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184365
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184365/suppl/GSM184365.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184365/suppl/GSM184365.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184366 | GPL570 |
|
Substantia nigra PD rep4
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184366
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184366/suppl/GSM184366.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184366/suppl/GSM184366.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184367 | GPL570 |
|
Substantia nigra PD rep5
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184367
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184367/suppl/GSM184367.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184367/suppl/GSM184367.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184368 | GPL570 |
|
Substantia nigra PD rep6
|
Postmortem human substantia nigra
|
Parkinson's Disease
female
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184368
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184368/suppl/GSM184368.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184368/suppl/GSM184368.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184369 | GPL570 |
|
Substantia nigra PD rep7
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184369
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184369/suppl/GSM184369.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184369/suppl/GSM184369.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184370 | GPL570 |
|
Substantia nigra PD rep8
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184370
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184370/suppl/GSM184370.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184370/suppl/GSM184370.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184371 | GPL570 |
|
Substantia nigra PD rep9
|
Postmortem human substantia nigra
|
Parkinson's Disease
female
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184371
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184371/suppl/GSM184371.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184371/suppl/GSM184371.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184372 | GPL570 |
|
Substantia nigra PD rep10
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184372
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184372/suppl/GSM184372.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184372/suppl/GSM184372.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184373 | GPL570 |
|
Substantia nigra PD rep11
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184373
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184373/suppl/GSM184373.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184373/suppl/GSM184373.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184374 | GPL570 |
|
Substantia nigra PD rep12
|
Postmortem human substantia nigra
|
Parkinson's Disease
female
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184374
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184374/suppl/GSM184374.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184374/suppl/GSM184374.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184375 | GPL570 |
|
Substantia nigra PD rep13
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184375
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184375/suppl/GSM184375.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184375/suppl/GSM184375.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184376 | GPL570 |
|
Substantia nigra PD rep14
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184376
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184376/suppl/GSM184376.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184376/suppl/GSM184376.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184377 | GPL570 |
|
Substantia nigra PD rep15
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184377
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184377/suppl/GSM184377.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184377/suppl/GSM184377.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
GSM184378 | GPL570 |
|
Substantia nigra PD rep16
|
Postmortem human substantia nigra
|
Parkinson's Disease
male
|
Gene expression data of substantia nigra from postmortem brain of PD patients
|
| Sample_geo_accession | GSM184378
| | Sample_status | Public on Jun 14 2007
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Brain tissue was removed with a Post-Mortem Interval (PMI) of 9.03±2.2 hr for Control samples and 7.05±1.25 hr for the PD samples, subsequently sectioned and frozen.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol lysis extraction of total RNA was performed on an M48 BioRobot with a Quiagen Megatrack Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for >16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jarlath,M.H.,ffrench-Mullen
| | Sample_contact_email | jfmullen@genelogic.com
| | Sample_contact_phone | 1-240-364-7622
| | Sample_contact_fax | 1-240-364-7603
| | Sample_contact_department | CNS Program
| | Sample_contact_institute | GeneLogic, Inc.
| | Sample_contact_address | 610 Professional Drive
| | Sample_contact_city | Gaithsburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20879
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184378/suppl/GSM184378.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184378/suppl/GSM184378.EXP.gz
| | Sample_series_id | GSE7621
| | Sample_data_row_count | 54339
| | |
|
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