Search results for the GEO ID: GSE7623  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM184414 | GPL1355 |
|
Brown adipose tissue, fed #1
|
brown adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: interscapular brown adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184414
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184414/suppl/GSM184414.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184414/suppl/GSM184414.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184414/suppl/GSM184414.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184415 | GPL1355 |
|
Brown adipose tissue, fed #2
|
brown adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: interscapular brown adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184415
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184415/suppl/GSM184415.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184415/suppl/GSM184415.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184415/suppl/GSM184415.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184416 | GPL1355 |
|
Brown adipose tissue, fed #4
|
brown adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: interscapular brown adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184416
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184416/suppl/GSM184416.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184416/suppl/GSM184416.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184416/suppl/GSM184416.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184417 | GPL1355 |
|
Brown adipose tissue, fed #5
|
brown adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: interscapular brown adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184417
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184417/suppl/GSM184417.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184417/suppl/GSM184417.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184417/suppl/GSM184417.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184418 | GPL1355 |
|
Brown adipose tissue, 24 h-fasted #6
|
brown adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: interscapular brown adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184418
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184418/suppl/GSM184418.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184418/suppl/GSM184418.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184418/suppl/GSM184418.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184419 | GPL1355 |
|
Brown adipose tissue, 24 h-fasted #8
|
brown adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: interscapular brown adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184419
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184419/suppl/GSM184419.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184419/suppl/GSM184419.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184419/suppl/GSM184419.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184420 | GPL1355 |
|
Brown adipose tissue, 24 h-fasted #9
|
brown adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: interscapular brown adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184420
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184420/suppl/GSM184420.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184420/suppl/GSM184420.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184420/suppl/GSM184420.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184421 | GPL1355 |
|
Brown adipose tissue, 24 h-fasted #10
|
brown adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: interscapular brown adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184421
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184421/suppl/GSM184421.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184421/suppl/GSM184421.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184421/suppl/GSM184421.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184422 | GPL1355 |
|
White adipose tissue, fed #1
|
white adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: perinephrial white adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184422
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184422/suppl/GSM184422.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184422/suppl/GSM184422.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184422/suppl/GSM184422.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184423 | GPL1355 |
|
White adipose tissue, fed #2
|
white adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: perinephrial white adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184423
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184423/suppl/GSM184423.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184423/suppl/GSM184423.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184423/suppl/GSM184423.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184424 | GPL1355 |
|
White adipose tissue, fed #4
|
white adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: perinephrial white adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184424
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184424/suppl/GSM184424.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184424/suppl/GSM184424.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184424/suppl/GSM184424.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184425 | GPL1355 |
|
White adipose tissue, fed #5
|
white adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: perinephrial white adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184425
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184425/suppl/GSM184425.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184425/suppl/GSM184425.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184425/suppl/GSM184425.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184426 | GPL1355 |
|
White adipose tissue, 24 h-fasted #6
|
white adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: perinephrial white adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184426
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184426/suppl/GSM184426.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184426/suppl/GSM184426.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184426/suppl/GSM184426.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184427 | GPL1355 |
|
White adipose tissue, 24 h-fasted #8
|
white adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: perinephrial white adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184427
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184427/suppl/GSM184427.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184427/suppl/GSM184427.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184427/suppl/GSM184427.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184428 | GPL1355 |
|
White adipose tissue, 24 h-fasted #9
|
white adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: perinephrial white adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184428
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184428/suppl/GSM184428.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184428/suppl/GSM184428.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184428/suppl/GSM184428.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184429 | GPL1355 |
|
White adipose tissue, 24 h-fasted #10
|
white adipose tissue
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: perinephrial white adipose tissue
|
No additional information
|
| Sample_geo_accession | GSM184429
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184429/suppl/GSM184429.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184429/suppl/GSM184429.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184429/suppl/GSM184429.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184430 | GPL1355 |
|
Liver, fed #1
|
liver
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: liver
|
No additional information
|
| Sample_geo_accession | GSM184430
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184430/suppl/GSM184430.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184430/suppl/GSM184430.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184430/suppl/GSM184430.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184431 | GPL1355 |
|
Liver, fed #2
|
liver
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: liver
|
No additional information
|
| Sample_geo_accession | GSM184431
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184431/suppl/GSM184431.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184431/suppl/GSM184431.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184431/suppl/GSM184431.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184432 | GPL1355 |
|
Liver, fed #4
|
liver
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: liver
|
No additional information
|
| Sample_geo_accession | GSM184432
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184432/suppl/GSM184432.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184432/suppl/GSM184432.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184432/suppl/GSM184432.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184433 | GPL1355 |
|
Liver, fed #5
|
liver
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: liver
|
No additional information
|
| Sample_geo_accession | GSM184433
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184433/suppl/GSM184433.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184433/suppl/GSM184433.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184433/suppl/GSM184433.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184434 | GPL1355 |
|
Liver, 24 h-fasted #6
|
liver
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: liver
|
No additional information
|
| Sample_geo_accession | GSM184434
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184434/suppl/GSM184434.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184434/suppl/GSM184434.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184434/suppl/GSM184434.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184435 | GPL1355 |
|
Liver, 24 h-fasted #8
|
liver
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: liver
|
No additional information
|
| Sample_geo_accession | GSM184435
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184435/suppl/GSM184435.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184435/suppl/GSM184435.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184435/suppl/GSM184435.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184436 | GPL1355 |
|
Liver, 24 h-fasted #9
|
liver
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: liver
|
No additional information
|
| Sample_geo_accession | GSM184436
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184436/suppl/GSM184436.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184436/suppl/GSM184436.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184436/suppl/GSM184436.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
GSM184437 | GPL1355 |
|
Liver, 24 h-fasted #10
|
liver
|
Strain: Wistar
Gender: male
Age: 8 weeks
Tissue: liver
|
No additional information
|
| Sample_geo_accession | GSM184437
| | Sample_status | Public on Jan 09 2008
| | Sample_submission_date | Apr 25 2007
| | Sample_last_update_date | Jan 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolatedusing ISOGEN (Nippon Gene Co., Ltd., Toyama, Japan), then purified with an RNeasy mini kit (Qiagen K.K., Tokyo, Japan).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 2 µg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 µg cRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Yuji,,Nakai
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | 1-1-1, Yayoi
| | Sample_contact_city | Bunkyo-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 113-8657
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184437/suppl/GSM184437.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184437/suppl/GSM184437.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184437/suppl/GSM184437.EXP.gz
| | Sample_series_id | GSE7623
| | Sample_data_row_count | 31099
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
