Search results for the GEO ID: GSE7755  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM187635 | GPL341 |
|
gubernacula_wt_GD18_female_A
|
gubernacula, LE/wt female fetus at gestational day 18 - fetus A
|
Strain: LE/wt
Gender: female
Age: Gestational day 18
Tissue: gubernaculum
Side: right and left
litter:1
fetus:1
|
gubernacula_wt_GD18_female_A
|
| Sample_geo_accession | GSM187635
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187635/suppl/GSM187635.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187636 | GPL341 |
|
gubernacula_wt_GD18_female_B
|
gubernacula, LE/wt female fetus at gestational day 18 - fetus B
|
Strain: LE/wt
Gender: female
Age: Gestational day 18
Tissue: gubernaculum
Side: right and left
litter:1
fetus:2
|
gubernacula_wt_GD18_female_B
|
| Sample_geo_accession | GSM187636
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187636/suppl/GSM187636.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187637 | GPL341 |
|
gubernacula_wt_GD18_female_C
|
gubernacula, LE/wt female fetus at gestational day 18 - fetus C
|
Strain: LE/wt
Gender: female
Age: Gestational day 18
Tissue: gubernaculum
Side: right and left
litter:1
fetus:3
|
gubernacula_wt_GD18_female_C
|
| Sample_geo_accession | GSM187637
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187637/suppl/GSM187637.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187638 | GPL341 |
|
gubernacula_wt_GD18_female_D
|
gubernacula, LE/wt female fetus at gestational day 18 - fetus D
|
Strain: LE/wt
Gender: female
Age: Gestational day 18
Tissue: gubernaculum
Side: right and left
litter:1
fetus:4
|
gubernacula_wt_GD18_female_D
|
| Sample_geo_accession | GSM187638
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187638/suppl/GSM187638.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187639 | GPL341 |
|
gubernaculum_wt_GD18_male_left_A
|
gubernaculum, LE/wt male fetus at gestational day 18 - fetus A
|
Strain: LE/wt
Gender: male
Age: Gestational day 18
Tissue: gubernaculum
Side: left
litter:2
fetus:5
|
gubernaculum_wt_GD18_male_left_A
|
| Sample_geo_accession | GSM187639
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187639/suppl/GSM187639.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187640 | GPL341 |
|
gubernaculum_wt_GD18_male_left_B
|
gubernaculum, LE/wt male fetus at gestational day 18 - fetus B
|
Strain: LE/wt
Gender: male
Age: Gestational day 18
Tissue: gubernaculum
Side: left
litter:2
fetus:6
|
gubernaculum_wt_GD18_male_left_B
|
| Sample_geo_accession | GSM187640
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187640/suppl/GSM187640.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187641 | GPL341 |
|
gubernaculum_wt_GD18_male_left_C
|
gubernaculum, LE/wt male fetus at gestational day 18 - fetus C
|
Strain: LE/wt
Gender: male
Age: Gestational day 18
Tissue: gubernaculum
Side: left
litter:2
fetus:7
|
gubernaculum_wt_GD18_male_left_C
|
| Sample_geo_accession | GSM187641
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187641/suppl/GSM187641.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187642 | GPL341 |
|
gubernaculum_wt_GD18_male_left_D
|
gubernaculum, LE/wt male fetus at gestational day 18 - fetus D
|
Strain: LE/wt
Gender: male
Age: Gestational day 18
Tissue: gubernaculum
Side: left
litter:2
fetus:8
|
gubernaculum_wt_GD18_male_left_D
|
| Sample_geo_accession | GSM187642
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187642/suppl/GSM187642.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187643 | GPL341 |
|
gubernaculum_wt_GD19_male_left_A
|
gubernaculum, LE/wt male fetus at gestational day 19 - fetus A
|
Strain: LE/wt
Gender: male
Age: Gestational day 19
Tissue: gubernaculum
Side: left
litter:3
fetus:9
|
gubernaculum_wt_GD19_male_left_A
|
| Sample_geo_accession | GSM187643
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187643/suppl/GSM187643.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187644 | GPL341 |
|
gubernaculum_wt_GD19_male_left_B
|
gubernaculum, LE/wt male fetus at gestational day 19 - fetus B
|
Strain: LE/wt
Gender: male
Age: Gestational day 19
Tissue: gubernaculum
Side: left
litter:3
fetus:10
|
gubernaculum_wt_GD19_male_left_B
|
| Sample_geo_accession | GSM187644
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187644/suppl/GSM187644.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187645 | GPL341 |
|
gubernaculum_wt_GD19_male_left_C
|
gubernaculum, LE/wt male fetus at gestational day 19 - fetus C
|
Strain: LE/wt
Gender: male
Age: Gestational day 19
Tissue: gubernaculum
Side: left
litter:3
fetus:11
|
gubernaculum_wt_GD19_male_left_C
|
| Sample_geo_accession | GSM187645
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187645/suppl/GSM187645.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187646 | GPL341 |
|
gubernaculum_wt_GD19_male_left_D
|
gubernaculum, LE/wt male fetus at gestational day 19 - fetus D
|
Strain: LE/wt
Gender: male
Age: Gestational day 19
Tissue: gubernaculum
Side: left
litter:3
fetus:12
|
gubernaculum_wt_GD19_male_left_D
|
| Sample_geo_accession | GSM187646
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187646/suppl/GSM187646.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187647 | GPL341 |
|
gubernaculum_wt_GD20_male_left_A
|
gubernaculum, LE/wt male fetus at gestational day 20 - fetus A
|
Strain: LE/wt
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: left
litter:4
fetus:13
|
gubernaculum_wt_GD20_male_left_A
|
| Sample_geo_accession | GSM187647
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187647/suppl/GSM187647.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187648 | GPL341 |
|
gubernaculum_wt_GD20_male_left_B
|
gubernaculum, LE/wt male fetus at gestational day 20 - fetus B
|
Strain: LE/wt
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: left
litter:4
fetus:14
|
gubernaculum_wt_GD20_male_left_B
|
| Sample_geo_accession | GSM187648
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187648/suppl/GSM187648.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187649 | GPL341 |
|
gubernaculum_wt_GD20_male_left_C
|
gubernaculum, LE/wt male fetus at gestational day 20 - fetus C
|
Strain: LE/wt
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: left
litter:4
fetus:15
|
gubernaculum_wt_GD20_male_left_C
|
| Sample_geo_accession | GSM187649
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187649/suppl/GSM187649.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187650 | GPL341 |
|
gubernaculum_wt_GD20_male_left_D
|
gubernaculum, LE/wt male fetus at gestational day 20 - fetus D
|
Strain: LE/wt
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: left
litter:4
fetus:16
|
gubernaculum_wt_GD20_male_left_D
|
| Sample_geo_accession | GSM187650
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187650/suppl/GSM187650.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187651 | GPL341 |
|
gubernaculum_wt_GD20_male_right_A
|
gubernaculum, LE/wt male fetus at gestational day 20 - fetus A
|
Strain: LE/wt
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: right
litter:4
fetus:13
|
gubernaculum_wt_GD20_male_right_A
|
| Sample_geo_accession | GSM187651
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187651/suppl/GSM187651.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187652 | GPL341 |
|
gubernaculum_wt_GD20_male_right_B
|
gubernaculum, LE/wt male fetus at gestational day 20 - fetus B
|
Strain: LE/wt
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: right
litter:4
fetus:14
|
gubernaculum_wt_GD20_male_right_B
|
| Sample_geo_accession | GSM187652
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187652/suppl/GSM187652.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187653 | GPL341 |
|
gubernaculum_wt_GD20_male_right_C
|
gubernaculum, LE/wt male fetus at gestational day 20 - fetus C
|
Strain: LE/wt
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: right
litter:4
fetus:15
|
gubernaculum_wt_GD20_male_right_C
|
| Sample_geo_accession | GSM187653
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187653/suppl/GSM187653.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187654 | GPL341 |
|
gubernaculum_orl_GD18_male_left_A
|
gubernaculum, LE/orl male fetus at gestational day 18 - fetus A
|
Strain: LE/orl
Gender: male
Age: Gestational day 18
Tissue: gubernaculum
Side: left
litter:5
fetus:17
|
gubernaculum_orl_GD18_male_left_A
|
| Sample_geo_accession | GSM187654
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187654/suppl/GSM187654.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187655 | GPL341 |
|
gubernaculum_orl_GD18_male_left_B
|
gubernaculum, LE/orl male fetus at gestational day 18 - fetus B
|
Strain: LE/orl
Gender: male
Age: Gestational day 18
Tissue: gubernaculum
Side: left
litter:5
fetus:18
|
gubernaculum_orl_GD18_male_left_B
|
| Sample_geo_accession | GSM187655
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187655/suppl/GSM187655.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187656 | GPL341 |
|
gubernaculum_orl_GD18_male_left_C
|
gubernaculum, LE/rol male fetus at gestational day 18 - fetus C
|
Strain: LE/orl
Gender: male
Age: Gestational day 18
Tissue: gubernaculum
Side: left
litter:5
fetus:19
|
gubernaculum_orl_GD18_male_left_C
|
| Sample_geo_accession | GSM187656
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187656/suppl/GSM187656.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187657 | GPL341 |
|
gubernaculum_orl_GD18_male_left_D
|
gubernaculum, LE/orl male fetus at gestational day 18 - fetus D
|
Strain: LE/orl
Gender: male
Age: Gestational day 18
Tissue: gubernaculum
Side: left
litter:5
fetus:20
|
gubernaculum_orl_GD18_male_left_D
|
| Sample_geo_accession | GSM187657
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187657/suppl/GSM187657.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187658 | GPL341 |
|
gubernaculum_orl_GD19_male_left_A
|
gubernaculum, LE/orl male fetus at gestational day 19 - fetus A
|
Strain: LE/orl
Gender: male
Age: Gestational day 19
Tissue: gubernaculum
Side: left
litter:6
fetus:21
|
gubernaculum_orl_GD19_male_left_A
|
| Sample_geo_accession | GSM187658
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187658/suppl/GSM187658.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187659 | GPL341 |
|
gubernaculum_orl_GD19_male_left_B
|
gubernaculum, LE/orl male fetus at gestational day 19 - fetus B
|
Strain: LE/orl
Gender: male
Age: Gestational day 19
Tissue: gubernaculum
Side: left
litter:6
fetus:22
|
gubernaculum_orl_GD19_male_left_B
|
| Sample_geo_accession | GSM187659
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187659/suppl/GSM187659.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187660 | GPL341 |
|
gubernaculum_orl_GD19_male_left_C
|
gubernaculum, LE/orl male fetus at gestational day 19 - fetus C
|
Strain: LE/orl
Gender: male
Age: Gestational day 19
Tissue: gubernaculum
Side: left
litter:6
fetus:23
|
gubernaculum_orl_GD19_male_left_C
|
| Sample_geo_accession | GSM187660
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187660/suppl/GSM187660.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187661 | GPL341 |
|
gubernaculum_orl_GD19_male_left_D
|
gubernaculum, LE/orl male fetus at gestational day 19 - fetus D
|
Strain: LE/orl
Gender: male
Age: Gestational day 19
Tissue: gubernaculum
Side: left
litter:6
fetus:24
|
gubernaculum_orl_GD19_male_left_D
|
| Sample_geo_accession | GSM187661
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187661/suppl/GSM187661.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187662 | GPL341 |
|
gubernaculum_orl_GD20_male_left_A
|
gubernaculum, LE/orl male fetus at gestational day 20 - fetus A
|
Strain: LE/orl
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: left
litter:7
fetus:25
|
gubernaculum_orl_GD20_male_left_A
|
| Sample_geo_accession | GSM187662
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187662/suppl/GSM187662.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187663 | GPL341 |
|
gubernaculum_orl_GD20_male_left_B
|
gubernaculum, LE/orl male fetus at gestational day 20 - fetus B
|
Strain: LE/orl
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: left
litter:7
fetus:26
|
gubernaculum_orl_GD20_male_left_B
|
| Sample_geo_accession | GSM187663
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187663/suppl/GSM187663.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187664 | GPL341 |
|
gubernaculum_orl_GD20_male_left_C
|
gubernaculum, LE/orl male fetus at gestational day 20 - fetus C
|
Strain: LE/orl
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: left
litter:7
fetus:27
|
gubernaculum_orl_GD20_male_left_C
|
| Sample_geo_accession | GSM187664
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187664/suppl/GSM187664.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187665 | GPL341 |
|
gubernaculum_orl_GD20_male_left_D
|
gubernaculum, LE/orl male fetus at gestational day 20 - fetus D
|
Strain: LE/orl
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: left
litter:7
fetus:28
|
gubernaculum_orl_GD20_male_left_D
|
| Sample_geo_accession | GSM187665
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187665/suppl/GSM187665.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187666 | GPL341 |
|
gubernaculum_orl_GD20_male_right_A
|
gubernaculum, LE/orl male fetus at gestational day 20 - fetus A
|
Strain: LE/orl
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: right
litter:7
fetus:25
|
gubernaculum_orl_GD20_male_right_A
|
| Sample_geo_accession | GSM187666
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187666/suppl/GSM187666.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187667 | GPL341 |
|
gubernaculum_orl_GD20_male_right_B
|
gubernaculum, LE/orl male fetus at gestational day 20 - fetus B
|
Strain: LE/orl
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: right
litter:7
fetus:26
|
gubernaculum_orl_GD20_male_right_B
|
| Sample_geo_accession | GSM187667
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187667/suppl/GSM187667.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187668 | GPL341 |
|
gubernaculum_orl_GD20_male_right_C
|
gubernaculum, LE/orl male fetus at gestational day 20 - fetus C
|
Strain: LE/orl
Gender: male
Age: Gestational day 20
Tissue: gubernaculum
Side: right
litter:7
fetus:27
|
gubernaculum_orl_GD20_male_right_C
|
| Sample_geo_accession | GSM187668
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 30 ng total RNA was amplified and labeled with the Affymetrix GeneChip Two-Cycle cDNA Synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187668/suppl/GSM187668.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187669 | GPL341 |
|
testis_wt_GD17_A
|
testis, LE/wt fetus at gestational day 17 - fetus A
|
Strain: LE/wt
Gender: male
Age: Gestational day 17
Tissue: testis
Side: left
litter:8
fetus:29
|
testis_wt_GD17_A
|
| Sample_geo_accession | GSM187669
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187669/suppl/GSM187669.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187670 | GPL341 |
|
testis_wt_GD17_B
|
testis, LE/wt fetus at gestational day 17 - fetus B
|
Strain: LE/wt
Gender: male
Age: Gestational day 17
Tissue: testis
Side: left
litter:8
fetus:30
|
testis_wt_GD17_B
|
| Sample_geo_accession | GSM187670
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187670/suppl/GSM187670.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187671 | GPL341 |
|
testis_wt_GD17_C
|
testis, LE/wt fetus at gestational day 17 - fetus C
|
Strain: LE/wt
Gender: male
Age: Gestational day 17
Tissue: testis
Side: left
litter:8
fetus:31
|
testis_wt_GD17_C
|
| Sample_geo_accession | GSM187671
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187671/suppl/GSM187671.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187672 | GPL341 |
|
testis_wt_GD17_D
|
testis, LE/wt fetus at gestational day 17 - fetus D
|
Strain: LE/wt
Gender: male
Age: Gestational day 17
Tissue: testis
Side: left
litter:8
fetus:32
|
testis_wt_GD17_D
|
| Sample_geo_accession | GSM187672
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187672/suppl/GSM187672.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187673 | GPL341 |
|
testis_wt_GD17_E
|
testis, LE/wt fetus at gestational day 17 - fetus E
|
Strain: LE/wt
Gender: male
Age: Gestational day 17
Tissue: testis
Side: left
litter:8
fetus:33
|
testis_wt_GD17_E
|
| Sample_geo_accession | GSM187673
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187673/suppl/GSM187673.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187674 | GPL341 |
|
testis_wt_GD19_A
|
testis, LE/wt fetus at gestational day 19 - fetus A
|
Strain: LE/wt
Gender: male
Age: Gestational day 19
Tissue: testis
Side: left
litter:3
fetus:10
|
testis_wt_GD19_A
|
| Sample_geo_accession | GSM187674
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187674/suppl/GSM187674.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187675 | GPL341 |
|
testis_wt_GD19_B
|
testis, LE/wt fetus at gestational day 19 - fetus B
|
Strain: LE/wt
Gender: male
Age: Gestational day 19
Tissue: testis
Side: left
litter:3
fetus:11
|
testis_wt_GD19_B
|
| Sample_geo_accession | GSM187675
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187675/suppl/GSM187675.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187676 | GPL341 |
|
testis_wt_GD19_C
|
testis, LE/wt fetus at gestational day 19 - fetus C
|
Strain: LE/wt
Gender: male
Age: Gestational day 19
Tissue: testis
Side: left
litter:3
fetus:34
|
testis_wt_GD19_C
|
| Sample_geo_accession | GSM187676
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187676/suppl/GSM187676.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187677 | GPL341 |
|
testis_wt_GD19_D
|
testis, LE/wt fetus at gestational day 19 - fetus D
|
Strain: LE/wt
Gender: male
Age: Gestational day 19
Tissue: testis
Side: left
litter:3
fetus:35
|
testis_wt_GD19_D
|
| Sample_geo_accession | GSM187677
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187677/suppl/GSM187677.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187678 | GPL341 |
|
testis_wt_GD19_E
|
testis, LE/wt fetus at gestational day 19 - fetus E
|
Strain: LE/wt
Gender: male
Age: Gestational day 19
Tissue: testis
Side: left
litter:3
fetus:12
|
testis_wt_GD19_E
|
| Sample_geo_accession | GSM187678
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187678/suppl/GSM187678.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187679 | GPL341 |
|
testis_orl_GD17_A
|
testis, LE/orl fetus at gestational day 17 - fetus A
|
Strain: LE/orl
Gender: male
Age: Gestational day 17
Tissue: testis
Side: left
litter:9
fetus:36
|
testis_orl_GD17_A
|
| Sample_geo_accession | GSM187679
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187679/suppl/GSM187679.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187680 | GPL341 |
|
testis_orl_GD17_B
|
testis, LE/orl fetus at gestational day 17 - fetus B
|
Strain: LE/orl
Gender: male
Age: Gestational day 17
Tissue: testis
Side: left
litter:9
fetus:37
|
testis_orl_GD17_B
|
| Sample_geo_accession | GSM187680
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187680/suppl/GSM187680.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187681 | GPL341 |
|
testis_orl_GD17_C
|
testis, LE/orl fetus at gestational day 17 - fetus C
|
Strain: LE/orl
Gender: male
Age: Gestational day 17
Tissue: testis
Side: left
litter:9
fetus:38
|
testis_orl_GD17_C
|
| Sample_geo_accession | GSM187681
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187681/suppl/GSM187681.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187682 | GPL341 |
|
testis_orl_GD17_D
|
testis, LE/orl fetus at gestational day 17 - fetus D
|
Strain: LE/orl
Gender: male
Age: Gestational day 17
Tissue: testis
Side: left
litter:9
fetus:39
|
testis_orl_GD17_D
|
| Sample_geo_accession | GSM187682
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187682/suppl/GSM187682.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187683 | GPL341 |
|
testis_orl_GD17_E
|
testis, LE/orl fetus at gestational day 17 - fetus E
|
Strain: LE/orl
Gender: male
Age: Gestational day 17
Tissue: testis
Side: left
litter:9
fetus:40
|
testis_orl_GD17_E
|
| Sample_geo_accession | GSM187683
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187683/suppl/GSM187683.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187684 | GPL341 |
|
testis_orl_GD19_A
|
testis, LE/orl fetus at gestational day 19 - fetus A
|
Strain: LE/orl
Gender: male
Age: Gestational day 19
Tissue: testis
Side: left
litter:6
fetus:41
|
testis_orl_GD19_A
|
| Sample_geo_accession | GSM187684
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187684/suppl/GSM187684.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187685 | GPL341 |
|
testis_orl_GD19_B
|
testis, LE/orl fetus at gestational day 19 - fetus B
|
Strain: LE/orl
Gender: male
Age: Gestational day 19
Tissue: testis
Side: left
litter:6
fetus:22
|
testis_orl_GD19_B
|
| Sample_geo_accession | GSM187685
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187685/suppl/GSM187685.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187686 | GPL341 |
|
testis_orl_GD19_C
|
testis, LE/orl fetus at gestational day 19 - fetus C
|
Strain: LE/orl
Gender: male
Age: Gestational day 19
Tissue: testis
Side: left
litter:6
fetus:23
|
testis_orl_GD19_C
|
| Sample_geo_accession | GSM187686
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187686/suppl/GSM187686.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187687 | GPL341 |
|
testis_orl_GD19_D
|
testis, LE/orl fetus at gestational day 19 - fetus D
|
Strain: LE/orl
Gender: male
Age: Gestational day 19
Tissue: testis
Side: left
litter:6
fetus:24
|
testis_orl_GD19_D
|
| Sample_geo_accession | GSM187687
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187687/suppl/GSM187687.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
|
GSM187688 | GPL341 |
|
testis_orl_GD19_E
|
testis, LE/orl fetus at gestational day 19 - fetus E
|
Strain: LE/orl
Gender: male
Age: Gestational day 19
Tissue: testis
Side: left
litter:6
fetus:42
|
testis_orl_GD19_E
|
| Sample_geo_accession | GSM187688
| | Sample_status | Public on Feb 03 2008
| | Sample_submission_date | May 07 2007
| | Sample_last_update_date | Feb 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | The lower half of a fetus was placed in RNAlater. After storage at 4'C for at least 24 hours, the gubernaculum was dissected and placed in lysis buffer from the RNeasy Mini Kit (Qiagen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using the RNeasy Mini Kit (Qiagen) and contaminating DNA was removed with the RNAse-free DNase Set (Qiagen), both according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared as follows. 1 ug total RNA was labeled with the Affymetrix GeneChip One-Cycle cDNA synthesis Kit, according to the manufacturer's instructions.
| | Sample_label_protocol_ch1 | Performed according to the standard Affymetrix protocol. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_hyb_protocol | Hybridization, washing and staining were performed according to the standard Affymetrix protocol with the Affymetrix Hybridization Oven 640 and GeneChip Fluidics Station. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_scan_protocol | GeneChips were scanned with the Affymetix GeneArray Scanner. This was performed at DuPont Haskell Laboratory for Health and Environmental Sciences.
| | Sample_data_processing | The GC-RMA algorithm was used within the AffylmGUI package of Bioconductor to calculate log2 expression values. CEL files from all samples from the same tissue in the series were input together.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Julia,S.,Barthold
| | Sample_contact_email | barthold@medsci.udel.edu
| | Sample_contact_department | Urology
| | Sample_contact_institute | Nemours/AI duPont Hospital for Children
| | Sample_contact_address | 1600 Rockland Road
| | Sample_contact_city | Wilmington
| | Sample_contact_state | DE
| | Sample_contact_zip/postal_code | 19803
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM187nnn/GSM187688/suppl/GSM187688.CEL.gz
| | Sample_series_id | GSE7755
| | Sample_data_row_count | 15923
| | |
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