Search results for the GEO ID: GSE7814  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM189596 | GPL8321 |
|
B6 day 0, biological rep 1, tech rep 1
|
Whole brain day 0, uninfected
|
C57/B6
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189596
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189596/suppl/GSM189596.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189597 | GPL8321 |
|
B6 day 0, biological rep 1, tech rep 2
|
Whole brain day 0, uninfected
|
C57/B6
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189597
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189597/suppl/GSM189597.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189598 | GPL8321 |
|
B6 day 0, biological rep 2, tech rep 1
|
Whole brain day 0, uninfected
|
C57/B6
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189598
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189598/suppl/GSM189598.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189599 | GPL8321 |
|
B6 day 0, biological rep 2, tech rep 2
|
Whole brain day 0, uninfected
|
C57/B6
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189599
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189599/suppl/GSM189599.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189600 | GPL8321 |
|
B6 day 0, biological rep 3, tech rep 1
|
Whole brain day 0, uninfected
|
C57/B6
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189600
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189600/suppl/GSM189600.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189601 | GPL8321 |
|
B6 day 0, biological rep 3, tech rep 2
|
Whole brain day 0, uninfected
|
C57/B6
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189601
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189601/suppl/GSM189601.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189602 | GPL8321 |
|
B6 day 0, biological rep 4, tech rep 1
|
Whole brain day 0, uninfected
|
C57/B6
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189602
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189602/suppl/GSM189602.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189603 | GPL8321 |
|
B6 day 0, biological rep 4, tech rep 2
|
Whole brain day 0, uninfected
|
C57/B6
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189603
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189603/suppl/GSM189603.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189604 | GPL8321 |
|
B6 day 1, biological rep 1, tech rep 1
|
Whole brain day 1
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189604
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189604/suppl/GSM189604.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189605 | GPL8321 |
|
B6 day 1, biological rep 1, tech rep 2
|
Whole brain day 1
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189605
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189605/suppl/GSM189605.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189606 | GPL8321 |
|
B6 day 1, biological rep 2, tech rep 1
|
Whole brain day 1
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189606
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189606/suppl/GSM189606.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189607 | GPL8321 |
|
B6 day 1, biological rep 2, tech rep 2
|
Whole brain day 1
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189607
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189607/suppl/GSM189607.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189608 | GPL8321 |
|
B6 day 1, biological rep 3, tech rep 1
|
Whole brain day 1
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189608
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189608/suppl/GSM189608.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189609 | GPL8321 |
|
B6 day 1, biological rep 3, tech rep 2
|
Whole brain day 1
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189609
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189609/suppl/GSM189609.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189610 | GPL8321 |
|
B6 day 1, biological rep 4, tech rep 1
|
Whole brain day 1
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189610
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189610/suppl/GSM189610.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189611 | GPL8321 |
|
B6 day 1, biological rep 4, tech rep 2
|
Whole brain day 1
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189611
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189611/suppl/GSM189611.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189612 | GPL8321 |
|
B6 day 3, biological rep 1, tech rep 1
|
Whole brain day 3
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189612
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189612/suppl/GSM189612.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189613 | GPL8321 |
|
B6 day 3, biological rep 1, tech rep 2
|
Whole brain day 3
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189613
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189613/suppl/GSM189613.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189614 | GPL8321 |
|
B6 day 3, biological rep 2, tech rep 1
|
Whole brain day 3
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189614
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189614/suppl/GSM189614.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189615 | GPL8321 |
|
B6 day 3, biological rep 2, tech rep 2
|
Whole brain day 3
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189615
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189615/suppl/GSM189615.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189616 | GPL8321 |
|
B6 day 3, biological rep 3, tech rep 1
|
Whole brain day 3
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189616
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189616/suppl/GSM189616.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189617 | GPL8321 |
|
B6 day 3, biological rep 3, tech rep 2
|
Whole brain day 3
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189617
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189617/suppl/GSM189617.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189618 | GPL8321 |
|
B6 day 3, biological rep 4, tech rep 1
|
Whole brain day 3
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189618
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189618/suppl/GSM189618.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189619 | GPL8321 |
|
B6 day 3, biological rep 4, tech rep 2
|
Whole brain day 3
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189619
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189619/suppl/GSM189619.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189620 | GPL8321 |
|
B6 day 6, biological rep 1, tech rep 1
|
Whole brain day 6
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189620
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189620/suppl/GSM189620.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189621 | GPL8321 |
|
B6 day 6, biological rep 1, tech rep 2
|
Whole brain day 6
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189621
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189621/suppl/GSM189621.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189622 | GPL8321 |
|
B6 day 6, biological rep 2, tech rep 1
|
Whole brain day 6
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189622
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189622/suppl/GSM189622.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189623 | GPL8321 |
|
B6 day 6, biological rep 2, tech rep 2
|
Whole brain day 6
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189623
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189623/suppl/GSM189623.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189624 | GPL8321 |
|
B6 day 6, biological rep 3, tech rep 1
|
Whole brain day 6
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189624
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189624/suppl/GSM189624.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189625 | GPL8321 |
|
B6 day 6, biological rep 3, tech rep 2
|
Whole brain day 6
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189625
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189625/suppl/GSM189625.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189626 | GPL8321 |
|
B6 day 6, biological rep 4, tech rep 1
|
Whole brain day 6
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189626
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189626/suppl/GSM189626.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189627 | GPL8321 |
|
B6 day 6, biological rep 4, tech rep 2
|
Whole brain day 6
|
C57/B6
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189627
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189627/suppl/GSM189627.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189628 | GPL8321 |
|
Balb/c day 0, biological rep 1, tech rep 1
|
Whole brain day 0, uninfected
|
Balb/C
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189628
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189628/suppl/GSM189628.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189629 | GPL8321 |
|
Balb/c day 0, biological rep 1, tech rep 2
|
Whole brain day 0, uninfected
|
Balb/C
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189629
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189629/suppl/GSM189629.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189630 | GPL8321 |
|
Balb/c day 0, biological rep 2, tech rep 1
|
Whole brain day 0, uninfected
|
Balb/C
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189630
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189630/suppl/GSM189630.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189631 | GPL8321 |
|
Balb/c day 0, biological rep 2, tech rep 2
|
Whole brain day 0, uninfected
|
Balb/C
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189631
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189631/suppl/GSM189631.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189632 | GPL8321 |
|
Balb/c day 0, biological rep 3, tech rep 1
|
Whole brain day 0, uninfected
|
Balb/C
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189632
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189632/suppl/GSM189632.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189633 | GPL8321 |
|
Balb/c day 0, biological rep 3, tech rep 2
|
Whole brain day 0, uninfected
|
Balb/C
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189633
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189633/suppl/GSM189633.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189634 | GPL8321 |
|
Balb/c day 0, biological rep 4, tech rep 1
|
Whole brain day 0, uninfected
|
Balb/C
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189634
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189634/suppl/GSM189634.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189635 | GPL8321 |
|
Balb/c day 0, biological rep 4, tech rep 2
|
Whole brain day 0, uninfected
|
Balb/C
Adult, male
|
Gene expression data from whole brain of uninfected mouse
|
| Sample_geo_accession | GSM189635
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189635/suppl/GSM189635.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189636 | GPL8321 |
|
Balb/c day 1, biological rep 1, tech rep 1
|
Whole brain day 1
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189636
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189636/suppl/GSM189636.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189637 | GPL8321 |
|
Balb/c day 1, biological rep 1, tech rep 2
|
Whole brain day 1
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189637
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189637/suppl/GSM189637.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189638 | GPL8321 |
|
Balb/c day 1, biological rep 2, tech rep 1
|
Whole brain day 1
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189638
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189638/suppl/GSM189638.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189639 | GPL8321 |
|
Balb/c day 1, biological rep 2, tech rep 2
|
Whole brain day 1
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189639
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189639/suppl/GSM189639.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189640 | GPL8321 |
|
Balb/c day 1, biological rep 3, tech rep 1
|
Whole brain day 1
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189640
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189640/suppl/GSM189640.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189641 | GPL8321 |
|
Balb/c day 1, biological rep 3, tech rep 2
|
Whole brain day 1
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189641
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189641/suppl/GSM189641.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189642 | GPL8321 |
|
Balb/c day 1, biological rep 4, tech rep 1
|
Whole brain day 1
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189642
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189642/suppl/GSM189642.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189643 | GPL8321 |
|
Balb/c day 1, biological rep 4, tech rep 2
|
Whole brain day 1
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 1
|
| Sample_geo_accession | GSM189643
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189643/suppl/GSM189643.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189644 | GPL8321 |
|
Balb/c day 3, biological rep 1, tech rep 1
|
Whole brain day 3
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189644
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189644/suppl/GSM189644.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189645 | GPL8321 |
|
Balb/c day 3, biological rep 1, tech rep 2
|
Whole brain day 3
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189645
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189645/suppl/GSM189645.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189646 | GPL8321 |
|
Balb/c day 3, biological rep 2, tech rep 1
|
Whole brain day 3
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189646
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189646/suppl/GSM189646.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189647 | GPL8321 |
|
Balb/c day 3, biological rep 2, tech rep 2
|
Whole brain day 3
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189647
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189647/suppl/GSM189647.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189648 | GPL8321 |
|
Balb/c day 3, biological rep 3, tech rep 1
|
Whole brain day 3
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189648
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189648/suppl/GSM189648.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189649 | GPL8321 |
|
Balb/c day 3, biological rep 3, tech rep 2
|
Whole brain day 3
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189649
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189649/suppl/GSM189649.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189650 | GPL8321 |
|
Balb/c day 3, biological rep 4, tech rep 1
|
Whole brain day 3
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189650
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189650/suppl/GSM189650.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189651 | GPL8321 |
|
Balb/c day 3, biological rep 4, tech rep 2
|
Whole brain day 3
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 3
|
| Sample_geo_accession | GSM189651
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189651/suppl/GSM189651.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189652 | GPL8321 |
|
Balb/c day 6, biological rep 1, tech rep 1
|
Whole brain day 6
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189652
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189652/suppl/GSM189652.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189653 | GPL8321 |
|
Balb/c day 6, biological rep 1, tech rep 2
|
Whole brain day 6
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189653
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189653/suppl/GSM189653.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189654 | GPL8321 |
|
Balb/c day 6, biological rep 2, tech rep 1
|
Whole brain day 6
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189654
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189654/suppl/GSM189654.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189655 | GPL8321 |
|
Balb/c day 6, biological rep 2, tech rep 2
|
Whole brain day 6
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189655
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189655/suppl/GSM189655.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189656 | GPL8321 |
|
Balb/c day 6, biological rep 3, tech rep 1
|
Whole brain day 6
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189656
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189656/suppl/GSM189656.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189657 | GPL8321 |
|
Balb/c day 6, biological rep 3, tech rep 2
|
Whole brain day 6
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189657
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189657/suppl/GSM189657.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189658 | GPL8321 |
|
Balb/c day 6, biological rep 4, tech rep 1
|
Whole brain day 6
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189658
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189658/suppl/GSM189658.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
GSM189659 | GPL8321 |
|
Balb/c day 6, biological rep 4, tech rep 2
|
Whole brain day 6
|
Balb/C
Adult, male
|
Gene expression data from whole brain infected mouse, day 6
|
| Sample_geo_accession | GSM189659
| | Sample_status | Public on Oct 01 2007
| | Sample_submission_date | May 15 2007
| | Sample_last_update_date | Mar 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cryopreserved P. berghei ANKA was thawed and passaged through naïve B6 donor mice until parasitemia in the passage animals reached approximately 10%. On day 0, mice were infected by intraperitoneal injection with 500,000 freshly isolated PbA parasitized erythrocytes. Parasitemia was monitored daily after Day 3 using thin blood smears
| | Sample_growth_protocol_ch1 | All adult male mice were housed in the same SPF facility.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Brains were homogenized in Trizol Reagent and total RNA was isolated according to the manufacturers' instructions. RNA was further purified of gDNA contamination and concentrated using a RNeasyPlus Mini Kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized to GeneChip MOE 430A 2.0 Array per Affymetrix protocols.
| | Sample_scan_protocol | Microarrays were scanned using Affymetrix GeneChip Scanner and GeneChip Operating Software (GCOS) was used for image analysis.
| | Sample_data_processing | Background adjustment and quantile normalization across all microarrays was performed using the Robust Multichip Average algorithm (RMAExpress).
| | Sample_platform_id | GPL8321
| | Sample_contact_name | Sina,,Gharib
| | Sample_contact_email | sagharib@u.washington.edu
| | Sample_contact_phone | 206-221-0630
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Washington
| | Sample_contact_address | 850 Republican
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189659/suppl/GSM189659.CEL.gz
| | Sample_series_id | GSE7814
| | Sample_data_row_count | 22690
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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