Search results for the GEO ID: GSE7821 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM189751 | GPL570 |
|
Healthy Twin 01a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 01
gender: female
age: 30
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 30a
|
Sample_geo_accession | GSM189751
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189751/suppl/GSM189751.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189751/suppl/GSM189751.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189752 | GPL570 |
|
Healthy Twin 01b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 01
gender: female
age: 30
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 30b
|
Sample_geo_accession | GSM189752
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189752/suppl/GSM189752.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189752/suppl/GSM189752.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189753 | GPL570 |
|
Healthy Twin 02a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 02
gender: female
age: 39
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 39a
|
Sample_geo_accession | GSM189753
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3002
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189753/suppl/GSM189753.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189753/suppl/GSM189753.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189754 | GPL570 |
|
Healthy Twin 02b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 02
gender: female
age: 39
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 39b
|
Sample_geo_accession | GSM189754
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3003
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189754/suppl/GSM189754.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189754/suppl/GSM189754.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189755 | GPL570 |
|
Healthy Twin 03a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 03
gender: female
age: 21
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 21a
|
Sample_geo_accession | GSM189755
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3004
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189755/suppl/GSM189755.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189755/suppl/GSM189755.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189756 | GPL570 |
|
Healthy Twin 03b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 03
gender: female
age: 21
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 21b
|
Sample_geo_accession | GSM189756
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3005
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189756/suppl/GSM189756.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189756/suppl/GSM189756.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189757 | GPL570 |
|
Healthy Twin 04a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 04
gender: female
age: 23
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 23a
|
Sample_geo_accession | GSM189757
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3006
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189757/suppl/GSM189757.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189757/suppl/GSM189757.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189758 | GPL570 |
|
Healthy Twin 04b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 04
gender: female
age: 23
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 23b
|
Sample_geo_accession | GSM189758
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3007
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189758/suppl/GSM189758.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189758/suppl/GSM189758.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189759 | GPL570 |
|
Healthy Twin 05a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 05
gender: female
age: 53
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 53a
|
Sample_geo_accession | GSM189759
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3008
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189759/suppl/GSM189759.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189759/suppl/GSM189759.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189760 | GPL570 |
|
Healthy Twin 05b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 05
gender: female
age: 53
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 53b
|
Sample_geo_accession | GSM189760
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3009
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189760/suppl/GSM189760.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189760/suppl/GSM189760.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189761 | GPL570 |
|
Healthy Twin 06a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 06
gender: male
age: 20
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 20a
|
Sample_geo_accession | GSM189761
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3010
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189761/suppl/GSM189761.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189761/suppl/GSM189761.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189762 | GPL570 |
|
Healthy Twin 06b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 06
gender: male
age: 20
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 20b
|
Sample_geo_accession | GSM189762
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3011
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189762/suppl/GSM189762.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189762/suppl/GSM189762.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189763 | GPL570 |
|
Healthy Twin 07a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 07
gender: female
age: 30
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 30a
|
Sample_geo_accession | GSM189763
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3012
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189763/suppl/GSM189763.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189763/suppl/GSM189763.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189764 | GPL570 |
|
Healthy Twin 07b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 07
gender: female
age: 30
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 30b
|
Sample_geo_accession | GSM189764
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3013
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189764/suppl/GSM189764.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189764/suppl/GSM189764.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189765 | GPL570 |
|
Healthy Twin 08a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 08
gender: female
age: 37
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 37a
|
Sample_geo_accession | GSM189765
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3014
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189765/suppl/GSM189765.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189765/suppl/GSM189765.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189766 | GPL570 |
|
Healthy Twin 08b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 08
gender: female
age: 37
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 37b
|
Sample_geo_accession | GSM189766
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3015
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189766/suppl/GSM189766.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189766/suppl/GSM189766.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189767 | GPL570 |
|
Healthy Twin 11a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 11
gender: male
age: 34
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 34a
|
Sample_geo_accession | GSM189767
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3016
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189767/suppl/GSM189767.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189767/suppl/GSM189767.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189768 | GPL570 |
|
Healthy Twin 11b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 11
gender: male
age: 34
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 34b
|
Sample_geo_accession | GSM189768
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3017
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189768/suppl/GSM189768.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189768/suppl/GSM189768.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189769 | GPL570 |
|
Healthy Twin 12a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 12
gender: male
age: 47
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 47a
|
Sample_geo_accession | GSM189769
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3018
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189769/suppl/GSM189769.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189769/suppl/GSM189769.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189770 | GPL570 |
|
Healthy Twin 12b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 12
gender: male
age: 47
genotype/variation: monozygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 47b
|
Sample_geo_accession | GSM189770
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3019
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189770/suppl/GSM189770.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189770/suppl/GSM189770.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189771 | GPL570 |
|
Healthy Twin 20a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 20
gender: female
age: 38
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 38a
|
Sample_geo_accession | GSM189771
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3020
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189771/suppl/GSM189771.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189771/suppl/GSM189771.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189772 | GPL570 |
|
Healthy Twin 20b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 20
gender: female
age: 38
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 38b
|
Sample_geo_accession | GSM189772
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3021
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189772/suppl/GSM189772.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189772/suppl/GSM189772.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189773 | GPL570 |
|
Healthy Twin 21a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 21
gender: female
age: 24
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 24a
|
Sample_geo_accession | GSM189773
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3022
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189773/suppl/GSM189773.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189773/suppl/GSM189773.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189774 | GPL570 |
|
Healthy Twin 21b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 21
gender: female
age: 24
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 24b
|
Sample_geo_accession | GSM189774
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3023
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189774/suppl/GSM189774.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189774/suppl/GSM189774.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189775 | GPL570 |
|
Healthy Twin 22a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 22
gender: male
age: 43
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 43a
|
Sample_geo_accession | GSM189775
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3024
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189775/suppl/GSM189775.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189775/suppl/GSM189775.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189776 | GPL570 |
|
Healthy Twin 22b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 22
gender: male
age: 43
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 43b
|
Sample_geo_accession | GSM189776
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3025
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189776/suppl/GSM189776.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189776/suppl/GSM189776.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189777 | GPL570 |
|
Healthy Twin 23a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 23
gender: male
age: 20
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 20a
|
Sample_geo_accession | GSM189777
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3026
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189777/suppl/GSM189777.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189777/suppl/GSM189777.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189778 | GPL570 |
|
Healthy Twin 23b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 23
gender: male
age: 20
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 20b
|
Sample_geo_accession | GSM189778
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3027
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189778/suppl/GSM189778.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189778/suppl/GSM189778.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189779 | GPL570 |
|
Healthy Twin 24a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 24
gender: female
age: 36
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 36a
|
Sample_geo_accession | GSM189779
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3028
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189779/suppl/GSM189779.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189779/suppl/GSM189779.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189780 | GPL570 |
|
Healthy Twin 24b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 24
gender: female
age: 36
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 36b
|
Sample_geo_accession | GSM189780
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3029
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189780/suppl/GSM189780.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189780/suppl/GSM189780.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189781 | GPL570 |
|
Healthy Twin 25a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 25
gender: female
age: 22
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 22a
|
Sample_geo_accession | GSM189781
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3030
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189781/suppl/GSM189781.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189781/suppl/GSM189781.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189782 | GPL570 |
|
Healthy Twin 25b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 25
gender: female
age: 22
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 22b
|
Sample_geo_accession | GSM189782
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3031
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189782/suppl/GSM189782.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189782/suppl/GSM189782.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189783 | GPL570 |
|
Healthy Twin 26a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 26
gender: female
age: 30
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 30a
|
Sample_geo_accession | GSM189783
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3032
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189783/suppl/GSM189783.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189783/suppl/GSM189783.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189784 | GPL570 |
|
Healthy Twin 26b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 26
gender: female
age: 30
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 30b
|
Sample_geo_accession | GSM189784
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3033
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189784/suppl/GSM189784.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189784/suppl/GSM189784.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189785 | GPL570 |
|
Healthy Twin 27a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 27
gender: female
age: 43
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 43a
|
Sample_geo_accession | GSM189785
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3034
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189785/suppl/GSM189785.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189785/suppl/GSM189785.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189786 | GPL570 |
|
Healthy Twin 27b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 27
gender: female
age: 43
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 43b
|
Sample_geo_accession | GSM189786
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3035
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189786/suppl/GSM189786.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189786/suppl/GSM189786.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189787 | GPL570 |
|
Healthy Twin 28a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 28
gender: male
age: 33
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 33a
|
Sample_geo_accession | GSM189787
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3036
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189787/suppl/GSM189787.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189787/suppl/GSM189787.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189788 | GPL570 |
|
Healthy Twin 28b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 28
gender: male
age: 33
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), male, age: 33b
|
Sample_geo_accession | GSM189788
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3037
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189788/suppl/GSM189788.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189788/suppl/GSM189788.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189789 | GPL570 |
|
Healthy Twin 29a
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 29
gender: female
age: 32
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 32a
|
Sample_geo_accession | GSM189789
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3038
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189789/suppl/GSM189789.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189789/suppl/GSM189789.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
|
GSM189790 | GPL570 |
|
Healthy Twin 29b
|
Intestinal mucosa biopsy from healthy human individuals
|
other: pair 29
gender: female
age: 32
genotype/variation: dizygotic twin
|
Gene expression data from healthy human twins (mucosal biopsies), female, age: 32b
|
Sample_geo_accession | GSM189790
| Sample_status | Public on May 05 2009
| Sample_submission_date | May 16 2007
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
| Sample_hyb_protocol | Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3039
| Sample_data_processing | Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
| Sample_platform_id | GPL570
| Sample_contact_name | Robert,,Haesler
| Sample_contact_email | r.haesler@mucosa.de
| Sample_contact_phone | +49 (0) 431 597 5754
| Sample_contact_laboratory | Functional Genomics Platform
| Sample_contact_department | IKMB / 1st Dept. of Medicine
| Sample_contact_institute | University Clinic of Schleswig Holstein
| Sample_contact_address | Schittenhelmstr. 12
| Sample_contact_city | Kiel
| Sample_contact_zip/postal_code | 24105
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189790/suppl/GSM189790.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM189nnn/GSM189790/suppl/GSM189790.CHP.gz
| Sample_series_id | GSE7821
| Sample_data_row_count | 54675
| |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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