Search results for the GEO ID: GSE7904  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM194397 | GPL570 |
|
Basal (T118)
|
T118
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194397
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194397/suppl/GSM194397.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194398 | GPL570 |
|
Basal (T134)
|
T134
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194398
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194398/suppl/GSM194398.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194399 | GPL570 |
|
Basal (T140)
|
T140
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194399
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194399/suppl/GSM194399.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194400 | GPL570 |
|
Basal (T141)
|
T141
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194400
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194400/suppl/GSM194400.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194401 | GPL570 |
|
Basal (T146)
|
T146
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194401
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194401/suppl/GSM194401.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194402 | GPL570 |
|
Basal (T147)
|
T147
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194402
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194402/suppl/GSM194402.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194403 | GPL570 |
|
Basal (T149)
|
T149
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194403
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194403/suppl/GSM194403.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194404 | GPL570 |
|
Basal (T133)
|
T133
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194404
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194404/suppl/GSM194404.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194405 | GPL570 |
|
Basal (T21)
|
T21
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194405
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194405/suppl/GSM194405.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194406 | GPL570 |
|
Basal (T56)
|
T56
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194406
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194406/suppl/GSM194406.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194407 | GPL570 |
|
Basal (T116)
|
T116
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194407
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194407/suppl/GSM194407.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194408 | GPL570 |
|
Basal (T144)
|
T144
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194408
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194408/suppl/GSM194408.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194409 | GPL570 |
|
Basal (T129)
|
T129
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194409
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194409/suppl/GSM194409.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194410 | GPL570 |
|
Basal (T143)
|
T143
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194410
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194410/suppl/GSM194410.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194411 | GPL570 |
|
Basal (T38)
|
T38
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194411
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194411/suppl/GSM194411.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194412 | GPL570 |
|
Basal (T123)
|
T123
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194412
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194412/suppl/GSM194412.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194413 | GPL570 |
|
Basal (T137)
|
T137
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194413
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194413/suppl/GSM194413.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194414 | GPL570 |
|
Basal (T130)
|
T130
|
Basal
|
no additional info
none
|
| Sample_geo_accession | GSM194414
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194414/suppl/GSM194414.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194415 | GPL570 |
|
BRCA1 (T636)
|
T636
|
BRCA1
|
no additional info
none
|
| Sample_geo_accession | GSM194415
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194415/suppl/GSM194415.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194416 | GPL570 |
|
BRCA1 (T151)
|
T151
|
BRCA1
|
no additional info
none
|
| Sample_geo_accession | GSM194416
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194416/suppl/GSM194416.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194417 | GPL570 |
|
BRCA1 (T152)
|
T152
|
BRCA1
|
no additional info
none
|
| Sample_geo_accession | GSM194417
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194417/suppl/GSM194417.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194418 | GPL570 |
|
BRCA1 (T911)
|
T911
|
BRCA1
|
no additional info
none
|
| Sample_geo_accession | GSM194418
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194418/suppl/GSM194418.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194419 | GPL570 |
|
Non-BLC (T183)
|
T183
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194419
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194419/suppl/GSM194419.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194420 | GPL570 |
|
Non-BLC (T117)
|
T117
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194420
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194420/suppl/GSM194420.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194421 | GPL570 |
|
Non-BLC (T115)
|
T115
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194421
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194421/suppl/GSM194421.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194422 | GPL570 |
|
Non-BLC (T175)
|
T175
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194422
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194422/suppl/GSM194422.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194423 | GPL570 |
|
Non-BLC (T178)
|
T178
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194423
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194423/suppl/GSM194423.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194424 | GPL570 |
|
Non-BLC (T74)
|
T74
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194424
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194424/suppl/GSM194424.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194425 | GPL570 |
|
Non-BLC (T162)
|
T162
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194425
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194425/suppl/GSM194425.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194426 | GPL570 |
|
Non-BLC (T145)
|
T145
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194426
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194426/suppl/GSM194426.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194427 | GPL570 |
|
Non-BLC (T119)
|
T119
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194427
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194427/suppl/GSM194427.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194428 | GPL570 |
|
Non-BLC (T188)
|
T188
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194428
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194428/suppl/GSM194428.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194429 | GPL570 |
|
Non-BLC (T37)
|
T37
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194429
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194429/suppl/GSM194429.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194430 | GPL570 |
|
Non-BLC (T30)
|
T30
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194430
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194430/suppl/GSM194430.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194431 | GPL570 |
|
Non-BLC (T84)
|
T84
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194431
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194431/suppl/GSM194431.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194432 | GPL570 |
|
Non-BLC (T81)
|
T81
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194432
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194432/suppl/GSM194432.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194433 | GPL570 |
|
Non-BLC (T50)
|
T50
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194433
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194433/suppl/GSM194433.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194434 | GPL570 |
|
Non-BLC (T4)
|
T4
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194434
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194434/suppl/GSM194434.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194435 | GPL570 |
|
Non-BLC (T41)
|
T41
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194435
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194435/suppl/GSM194435.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194436 | GPL570 |
|
Non-BLC (T73)
|
T73
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194436
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194436/suppl/GSM194436.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194437 | GPL570 |
|
Non-BLC (T92)
|
T92
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194437
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194437/suppl/GSM194437.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194438 | GPL570 |
|
Non-BLC (T161)
|
T161
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194438
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194438/suppl/GSM194438.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194439 | GPL570 |
|
Non-BLC (T44)
|
T44
|
non-BLC
|
no additional info
none
|
| Sample_geo_accession | GSM194439
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194439/suppl/GSM194439.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194440 | GPL570 |
|
Normal organelle (NE9)
|
NE9
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194440
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194440/suppl/GSM194440.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194441 | GPL570 |
|
Normal organelle (NE1)
|
NE1
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194441
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194441/suppl/GSM194441.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194442 | GPL570 |
|
Normal organelle (NE2)
|
NE2
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194442
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194442/suppl/GSM194442.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194443 | GPL570 |
|
Normal organelle (NE3)
|
NE3
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194443
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194443/suppl/GSM194443.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194444 | GPL570 |
|
Normal organelle (NE4)
|
NE4
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194444
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194444/suppl/GSM194444.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194445 | GPL570 |
|
Normal organelle (NE5)
|
NE5
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194445
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194445/suppl/GSM194445.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194446 | GPL570 |
|
Normal organelle (NE6)
|
NE6
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194446
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194446/suppl/GSM194446.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194447 | GPL570 |
|
Normal organelle (NE7)
|
NE7
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194447
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194447/suppl/GSM194447.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194448 | GPL570 |
|
Normal organelle (NE8)
|
NE8
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194448
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194448/suppl/GSM194448.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194449 | GPL570 |
|
Normal organelle (NE10)
|
NE10
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194449
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194449/suppl/GSM194449.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194450 | GPL570 |
|
Normal organelle (NE768)
|
NE768
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194450
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194450/suppl/GSM194450.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194451 | GPL570 |
|
Normal organelle (NE817)
|
NE817
|
NO
|
no additional info
none
|
| Sample_geo_accession | GSM194451
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194451/suppl/GSM194451.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194452 | GPL570 |
|
Normal breast (B42)
|
B42
|
NB
|
no additional info
none
|
| Sample_geo_accession | GSM194452
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194452/suppl/GSM194452.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194453 | GPL570 |
|
Normal breast (B58)
|
B58
|
NB
|
no additional info
none
|
| Sample_geo_accession | GSM194453
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194453/suppl/GSM194453.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194454 | GPL570 |
|
Normal breast (B60)
|
B60
|
NB
|
no additional info
none
|
| Sample_geo_accession | GSM194454
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194454/suppl/GSM194454.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194455 | GPL570 |
|
Normal breast (B64)
|
B64
|
NB
|
no additional info
none
|
| Sample_geo_accession | GSM194455
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194455/suppl/GSM194455.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194456 | GPL570 |
|
Normal breast (B69)
|
B69
|
NB
|
no additional info
none
|
| Sample_geo_accession | GSM194456
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194456/suppl/GSM194456.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194457 | GPL570 |
|
Normal breast (B83)
|
B83
|
NB
|
no additional info
none
|
| Sample_geo_accession | GSM194457
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194457/suppl/GSM194457.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
GSM194458 | GPL570 |
|
Normal breast (B87)
|
B87
|
NB
|
no additional info
none
|
| Sample_geo_accession | GSM194458
| | Sample_status | Public on May 30 2007
| | Sample_submission_date | May 25 2007
| | Sample_last_update_date | May 29 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-72
| | Sample_growth_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extration, cRNA synthesis and hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64 (2004), pp. 64-73
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with dchip with default normalization settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM194nnn/GSM194458/suppl/GSM194458.CEL.gz
| | Sample_series_id | GSE7904
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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