Search results for the GEO ID: GSE8013  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM197832 | GPL341 |
|
Primary hepatocyte control, biological rep 1
|
primary hepatocyte in culture from rat 1
|
agent: control
|
gene expression data from primary rat hepatocyte in culture
|
| Sample_geo_accession | GSM197832
| | Sample_status | Public on Feb 25 2009
| | Sample_submission_date | Jun 04 2007
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Primary rat hepatocytes in culture are incubated with low concentration of cadmium chloride (4μM) for 3 hours or nothing (culture media only).
| | Sample_growth_protocol_ch1 | Primary rat heaptocytes were isolated, plated in culture dishes and incubated overnight prior to treatment of either control group (culture media) or cadmium group.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 μg total RNA (Expression Analysis Technical Manual, 701022 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 μg of cRNA were hybridized for 16 hrs at 45°C on RAE 230A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Susan,R,Stapleton
| | Sample_contact_email | susan.stapleton@wmich.edu
| | Sample_contact_phone | 269-387-2853
| | Sample_contact_fax | 269-387-2909
| | Sample_contact_department | Chemistry
| | Sample_contact_institute | Western Michigan University
| | Sample_contact_address | 3425 Wood Hall
| | Sample_contact_city | Kalamazoo
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49008
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197832/suppl/GSM197832.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197832/suppl/GSM197832.EXP.gz
| | Sample_series_id | GSE8013
| | Sample_data_row_count | 15923
| | |
|
GSM197833 | GPL341 |
|
Primary hepatocyte control, biological rep 2
|
primary hepatocyte in culture from rat 2
|
agent: control
|
gene expression data from primary rat hepatocyte in culture
|
| Sample_geo_accession | GSM197833
| | Sample_status | Public on Feb 25 2009
| | Sample_submission_date | Jun 04 2007
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Primary rat hepatocytes in culture are incubated with low concentration of cadmium chloride (4μM) for 3 hours or nothing (culture media only).
| | Sample_growth_protocol_ch1 | Primary rat heaptocytes were isolated, plated in culture dishes and incubated overnight prior to treatment of either control group (culture media) or cadmium group.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 μg total RNA (Expression Analysis Technical Manual, 701022 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 μg of cRNA were hybridized for 16 hrs at 45°C on RAE 230A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Susan,R,Stapleton
| | Sample_contact_email | susan.stapleton@wmich.edu
| | Sample_contact_phone | 269-387-2853
| | Sample_contact_fax | 269-387-2909
| | Sample_contact_department | Chemistry
| | Sample_contact_institute | Western Michigan University
| | Sample_contact_address | 3425 Wood Hall
| | Sample_contact_city | Kalamazoo
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49008
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197833/suppl/GSM197833.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197833/suppl/GSM197833.EXP.gz
| | Sample_series_id | GSE8013
| | Sample_data_row_count | 15923
| | |
|
GSM197834 | GPL341 |
|
Primary hepatocyte control, biological rep 3
|
primary hepatocyte in culture from rat 3
|
agent: control
|
gene expression data from primary rat hepatocyte in culture
|
| Sample_geo_accession | GSM197834
| | Sample_status | Public on Feb 25 2009
| | Sample_submission_date | Jun 04 2007
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Primary rat hepatocytes in culture are incubated with low concentration of cadmium chloride (4μM) for 3 hours or nothing (culture media only).
| | Sample_growth_protocol_ch1 | Primary rat heaptocytes were isolated, plated in culture dishes and incubated overnight prior to treatment of either control group (culture media) or cadmium group.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 μg total RNA (Expression Analysis Technical Manual, 701022 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 μg of cRNA were hybridized for 16 hrs at 45°C on RAE 230A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Susan,R,Stapleton
| | Sample_contact_email | susan.stapleton@wmich.edu
| | Sample_contact_phone | 269-387-2853
| | Sample_contact_fax | 269-387-2909
| | Sample_contact_department | Chemistry
| | Sample_contact_institute | Western Michigan University
| | Sample_contact_address | 3425 Wood Hall
| | Sample_contact_city | Kalamazoo
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49008
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197834/suppl/GSM197834.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197834/suppl/GSM197834.EXP.gz
| | Sample_series_id | GSE8013
| | Sample_data_row_count | 15923
| | |
|
GSM197835 | GPL341 |
|
Primary hepatocyte control, biological rep 4
|
primary hepatocyte in culture from rat 4
|
agent: control
|
gene expression data from primary rat hepatocyte in culture
|
| Sample_geo_accession | GSM197835
| | Sample_status | Public on Feb 25 2009
| | Sample_submission_date | Jun 04 2007
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Primary rat hepatocytes in culture are incubated with low concentration of cadmium chloride (4μM) for 3 hours or nothing (culture media only).
| | Sample_growth_protocol_ch1 | Primary rat heaptocytes were isolated, plated in culture dishes and incubated overnight prior to treatment of either control group (culture media) or cadmium group.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 μg total RNA (Expression Analysis Technical Manual, 701022 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 μg of cRNA were hybridized for 16 hrs at 45°C on RAE 230A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Susan,R,Stapleton
| | Sample_contact_email | susan.stapleton@wmich.edu
| | Sample_contact_phone | 269-387-2853
| | Sample_contact_fax | 269-387-2909
| | Sample_contact_department | Chemistry
| | Sample_contact_institute | Western Michigan University
| | Sample_contact_address | 3425 Wood Hall
| | Sample_contact_city | Kalamazoo
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49008
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197835/suppl/GSM197835.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197835/suppl/GSM197835.EXP.gz
| | Sample_series_id | GSE8013
| | Sample_data_row_count | 15923
| | |
|
GSM197836 | GPL341 |
|
Primary hepatocyte cadmium, biological rep 1
|
primary hepatocyte in culture from rat 1
|
agent: cadmium
dose: 4μM
time: 3hrs
|
gene expression data from primary rat hepatocyte in culture
|
| Sample_geo_accession | GSM197836
| | Sample_status | Public on Feb 25 2009
| | Sample_submission_date | Jun 04 2007
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Primary rat hepatocytes in culture are incubated with low concentration of cadmium chloride (4μM) for 3 hours or nothing (culture media only).
| | Sample_growth_protocol_ch1 | Primary rat heaptocytes were isolated, plated in culture dishes and incubated overnight prior to treatment of either control group (culture media) or cadmium group.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 μg total RNA (Expression Analysis Technical Manual, 701022 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 μg of cRNA were hybridized for 16 hrs at 45°C on RAE 230A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Susan,R,Stapleton
| | Sample_contact_email | susan.stapleton@wmich.edu
| | Sample_contact_phone | 269-387-2853
| | Sample_contact_fax | 269-387-2909
| | Sample_contact_department | Chemistry
| | Sample_contact_institute | Western Michigan University
| | Sample_contact_address | 3425 Wood Hall
| | Sample_contact_city | Kalamazoo
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49008
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197836/suppl/GSM197836.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197836/suppl/GSM197836.EXP.gz
| | Sample_series_id | GSE8013
| | Sample_data_row_count | 15923
| | |
|
GSM197837 | GPL341 |
|
Primary hepatocyte cadmium, biological rep 2
|
primary hepatocyte in culture from rat 2
|
agent: cadmium
dose: 4μM
time: 3hrs
|
gene expression data from primary rat hepatocyte in culture
|
| Sample_geo_accession | GSM197837
| | Sample_status | Public on Feb 25 2009
| | Sample_submission_date | Jun 04 2007
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Primary rat hepatocytes in culture are incubated with low concentration of cadmium chloride (4μM) for 3 hours or nothing (culture media only).
| | Sample_growth_protocol_ch1 | Primary rat heaptocytes were isolated, plated in culture dishes and incubated overnight prior to treatment of either control group (culture media) or cadmium group.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 μg total RNA (Expression Analysis Technical Manual, 701022 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 μg of cRNA were hybridized for 16 hrs at 45°C on RAE 230A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Susan,R,Stapleton
| | Sample_contact_email | susan.stapleton@wmich.edu
| | Sample_contact_phone | 269-387-2853
| | Sample_contact_fax | 269-387-2909
| | Sample_contact_department | Chemistry
| | Sample_contact_institute | Western Michigan University
| | Sample_contact_address | 3425 Wood Hall
| | Sample_contact_city | Kalamazoo
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49008
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197837/suppl/GSM197837.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197837/suppl/GSM197837.EXP.gz
| | Sample_series_id | GSE8013
| | Sample_data_row_count | 15923
| | |
|
GSM197838 | GPL341 |
|
Primary hepatocyte cadmium, biological rep 3
|
primary hepatocyte in culture from rat 3
|
agent: cadmium
dose: 4μM
time: 3hrs
|
gene expression data from primary rat hepatocyte in culture
|
| Sample_geo_accession | GSM197838
| | Sample_status | Public on Feb 25 2009
| | Sample_submission_date | Jun 04 2007
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Primary rat hepatocytes in culture are incubated with low concentration of cadmium chloride (4μM) for 3 hours or nothing (culture media only).
| | Sample_growth_protocol_ch1 | Primary rat heaptocytes were isolated, plated in culture dishes and incubated overnight prior to treatment of either control group (culture media) or cadmium group.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 μg total RNA (Expression Analysis Technical Manual, 701022 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 μg of cRNA were hybridized for 16 hrs at 45°C on RAE 230A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Susan,R,Stapleton
| | Sample_contact_email | susan.stapleton@wmich.edu
| | Sample_contact_phone | 269-387-2853
| | Sample_contact_fax | 269-387-2909
| | Sample_contact_department | Chemistry
| | Sample_contact_institute | Western Michigan University
| | Sample_contact_address | 3425 Wood Hall
| | Sample_contact_city | Kalamazoo
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49008
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197838/suppl/GSM197838.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197838/suppl/GSM197838.EXP.gz
| | Sample_series_id | GSE8013
| | Sample_data_row_count | 15923
| | |
|
GSM197839 | GPL341 |
|
Primary hepatocyte cadmium, biological rep 4
|
primary hepatocyte in culture from rat 4
|
agent: cadmium
dose: 4μM
time: 3hrs
|
gene expression data from primary rat hepatocyte in culture
|
| Sample_geo_accession | GSM197839
| | Sample_status | Public on Feb 25 2009
| | Sample_submission_date | Jun 04 2007
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Primary rat hepatocytes in culture are incubated with low concentration of cadmium chloride (4μM) for 3 hours or nothing (culture media only).
| | Sample_growth_protocol_ch1 | Primary rat heaptocytes were isolated, plated in culture dishes and incubated overnight prior to treatment of either control group (culture media) or cadmium group.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 μg total RNA (Expression Analysis Technical Manual, 701022 Rev. 2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 μg of cRNA were hybridized for 16 hrs at 45°C on RAE 230A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Susan,R,Stapleton
| | Sample_contact_email | susan.stapleton@wmich.edu
| | Sample_contact_phone | 269-387-2853
| | Sample_contact_fax | 269-387-2909
| | Sample_contact_department | Chemistry
| | Sample_contact_institute | Western Michigan University
| | Sample_contact_address | 3425 Wood Hall
| | Sample_contact_city | Kalamazoo
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 49008
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197839/suppl/GSM197839.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM197nnn/GSM197839/suppl/GSM197839.EXP.gz
| | Sample_series_id | GSE8013
| | Sample_data_row_count | 15923
| | |
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