Search results for the GEO ID: GSE8023 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM198042 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 11.40.2 grown serum-free, CD34 purified, replicate 1
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from long-term serum-free cultures of AML1-ETO-transduced cord blood cells, CD34 selected
|
Sample_geo_accession | GSM198042
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198042/suppl/GSM198042.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
| |
|
GSM198043 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 11.40.2 grown serum-free, CD34 purified, replicate 2
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from long-term serum-free cultures of AML1-ETO-transduced cord blood cells, CD34 selected
|
Sample_geo_accession | GSM198043
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198043/suppl/GSM198043.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
| |
|
GSM198044 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 11.40.2 grown serum-free, CD34 purified, replicate 3
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from long-term serum-free cultures of AML1-ETO-transduced cord blood cells, CD34 selected
|
Sample_geo_accession | GSM198044
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198044/suppl/GSM198044.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
| |
|
GSM198045 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 13.2 grown serum-free, CD34 purified, replicate 1
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from long-term serum-free cultures of AML1-ETO-transduced cord blood cells, CD34 selected
|
Sample_geo_accession | GSM198045
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198045/suppl/GSM198045.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
| |
|
GSM198046 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 13.2 grown serum-free, CD34 purified, replicate 2
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from long-term serum-free cultures of AML1-ETO-transduced cord blood cells, CD34 selected
|
Sample_geo_accession | GSM198046
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198046/suppl/GSM198046.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
| |
|
GSM198047 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 9 grown serum-free, CD34 purified, replicate 1
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from long-term serum-free cultures of AML1-ETO-transduced cord blood cells, CD34 selected
|
Sample_geo_accession | GSM198047
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198047/suppl/GSM198047.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
| |
|
GSM198048 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 9 grown serum-free, CD34 purified, replicate 2
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from long-term serum-free cultures of AML1-ETO-transduced cord blood cells, CD34 selected
|
Sample_geo_accession | GSM198048
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198048/suppl/GSM198048.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
| |
|
GSM198049 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 9 grown serum-free, CD34 purified, replicate 3
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from long-term serum-free cultures of AML1-ETO-transduced cord blood cells, CD34 selected
|
Sample_geo_accession | GSM198049
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198049/suppl/GSM198049.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
| |
|
GSM198050 | GPL570 |
|
AML1-ETO expressing cord blood cell, clone 9 grown serum-free, CD34 purified, replicate 4
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from long-term serum-free cultures of AML1-ETO-transduced cord blood cells, CD34 selected
|
Sample_geo_accession | GSM198050
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198050/suppl/GSM198050.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
| |
|
GSM198051 | GPL570 |
|
Cord blood cells, grown serum-free, CD34 purified, replicate 1
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from long-term serum-free cultures of CD34+ cord blood cells, CD34 selected
|
Sample_geo_accession | GSM198051
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198051/suppl/GSM198051.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
| |
|
GSM198052 | GPL570 |
|
Cord blood cells, grown serum-free, CD34 purified, replicate 2
|
Human CD34+ cord blood cells
|
normal donors
|
Gene expression data from long-term serum-free cultures of CD34+ cord blood cells, CD34 selected
|
Sample_geo_accession | GSM198052
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198052/suppl/GSM198052.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
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GSM198053 | GPL570 |
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Cord blood cells, grown serum-free, CD34 purified, replicate 3
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Human CD34+ cord blood cells
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normal donors
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Gene expression data from long-term serum-free cultures of CD34+ cord blood cells, CD34 selected
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Sample_geo_accession | GSM198053
| Sample_status | Public on Dec 20 2007
| Sample_submission_date | Jun 05 2007
| Sample_last_update_date | Dec 20 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA from cells was extracted using the Rneasy Mini Kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | For cDNA generation, and cRNA labeling we used the ëOne-cycle target labelingí protocol as described by the respective Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_hyb_protocol | All hybridization, staining and washing steps were carried out as specified by the Affymetrix technical manual. (http://www.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G with GeneChip Operating Software Version 1.4.0.036 (Affymetrix)
| Sample_data_processing | Data were pre-processed with Microarray Suite version 5.0 function of Bioconductor package (R) using default settings
| Sample_platform_id | GPL570
| Sample_contact_name | James,,Mulloy
| Sample_contact_email | james.mulloy@cchmc.org
| Sample_contact_phone | (513) 636-1844
| Sample_contact_fax | 513-636-3768
| Sample_contact_laboratory | ML7013
| Sample_contact_department | Experimental Hematology
| Sample_contact_institute | Cincinnati Children's Hospital Research Foundation
| Sample_contact_address | 3333 Burnet Ave
| Sample_contact_city | Cincinnati
| Sample_contact_state | OH
| Sample_contact_zip/postal_code | 45229
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.cincinnatichildrens.org/research/div/exp-hematology/labs/genotox/mulloy/
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM198nnn/GSM198053/suppl/GSM198053.CEL.gz
| Sample_series_id | GSE8023
| Sample_data_row_count | 54675
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