Search results for the GEO ID: GSE8078  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM184872 | GPL1355 |
|
Dahl Salt Sensitive Rat Lung- Control 1
|
Rat Lung
|
Genotype: Control Dahl Salt Sensitive Rats
Weights: 250-350 grams
|
Gene expression data from rat lungs exposed to Normoxia (room air).
|
| Sample_geo_accession | GSM184872
| | Sample_status | Public on Jun 15 2007
| | Sample_submission_date | Apr 26 2007
| | Sample_last_update_date | Jun 14 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At the termination of each experiment, all animals were euthanized by exsanguination under anesthesia in accordance with institutional guidelines. The pulmonary vasculature was perfused via the pulmonary artery with sterile ph
| | Sample_growth_protocol_ch1 | Not Applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GC Robust Multichip Average (RMA) module of Bioconductor package and the arrays were normalized against all of the 15 chips including those from normoxia, hypoxia, hypoxia-SU5416, and hypoxia-SU5416-so
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ankit,A,Desai
| | Sample_contact_email | adesai1@gmail.com
| | Sample_contact_phone | 312-523-7931
| | Sample_contact_fax | 773-834-2687
| | Sample_contact_laboratory | Joe G.N. Garcia Lab / Center for Integrative Science
| | Sample_contact_department | Medicine
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 929 East 57th Street, Room W403R
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184872/suppl/GSM184872.CEL.gz
| | Sample_series_id | GSE8078
| | Sample_series_id | GSE8134
| | Sample_data_row_count | 31099
| | |
|
GSM184873 | GPL1355 |
|
Dahl Salt Sensitive Rat Lung- Control 2
|
Rat Lung
|
Genotype: Control Dahl Salt Sensitive Rats
Weights: 250-350 grams
|
Gene expression data from rat lungs exposed to Normoxia (room air).
|
| Sample_geo_accession | GSM184873
| | Sample_status | Public on Jun 15 2007
| | Sample_submission_date | Apr 26 2007
| | Sample_last_update_date | Jun 14 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At the termination of each experiment, all animals were euthanized by exsanguination under anesthesia in accordance with institutional guidelines. The pulmonary vasculature was perfused via the pulmonary artery with sterile ph
| | Sample_growth_protocol_ch1 | Not Applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GC Robust Multichip Average (RMA) module of Bioconductor package and the arrays were normalized against all of the 15 chips including those from normoxia, hypoxia, hypoxia-SU5416, and hypoxia-SU5416-so
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ankit,A,Desai
| | Sample_contact_email | adesai1@gmail.com
| | Sample_contact_phone | 312-523-7931
| | Sample_contact_fax | 773-834-2687
| | Sample_contact_laboratory | Joe G.N. Garcia Lab / Center for Integrative Science
| | Sample_contact_department | Medicine
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 929 East 57th Street, Room W403R
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184873/suppl/GSM184873.CEL.gz
| | Sample_series_id | GSE8078
| | Sample_series_id | GSE8134
| | Sample_data_row_count | 31099
| | |
|
GSM184874 | GPL1355 |
|
Dahl Salt Sensitive Rat Lung- Control 3
|
Rat Lung
|
Genotype: Control Dahl Salt Sensitive Rats
Weights: 250-350 grams
|
Gene expression data from rat lungs exposed to Normoxia (room air).
|
| Sample_geo_accession | GSM184874
| | Sample_status | Public on Jun 15 2007
| | Sample_submission_date | Apr 26 2007
| | Sample_last_update_date | Jun 14 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At the termination of each experiment, all animals were euthanized by exsanguination under anesthesia in accordance with institutional guidelines. The pulmonary vasculature was perfused via the pulmonary artery with sterile ph
| | Sample_growth_protocol_ch1 | Not Applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GC Robust Multichip Average (RMA) module of Bioconductor package and the arrays were normalized against all of the 15 chips including those from normoxia, hypoxia, hypoxia-SU5416, and hypoxia-SU5416-so
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ankit,A,Desai
| | Sample_contact_email | adesai1@gmail.com
| | Sample_contact_phone | 312-523-7931
| | Sample_contact_fax | 773-834-2687
| | Sample_contact_laboratory | Joe G.N. Garcia Lab / Center for Integrative Science
| | Sample_contact_department | Medicine
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 929 East 57th Street, Room W403R
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184874/suppl/GSM184874.CEL.gz
| | Sample_series_id | GSE8078
| | Sample_series_id | GSE8134
| | Sample_data_row_count | 31099
| | |
|
GSM184875 | GPL1355 |
|
Dahl Salt Sensitive Rat Lung- Control 4
|
Rat Lung
|
Genotype: Control Dahl Salt Sensitive Rats
Weights: 250-350 grams
|
Gene expression data from rat lungs exposed to Normoxia (room air).
|
| Sample_geo_accession | GSM184875
| | Sample_status | Public on Jun 15 2007
| | Sample_submission_date | Apr 26 2007
| | Sample_last_update_date | Jun 14 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At the termination of each experiment, all animals were euthanized by exsanguination under anesthesia in accordance with institutional guidelines. The pulmonary vasculature was perfused via the pulmonary artery with sterile ph
| | Sample_growth_protocol_ch1 | Not Applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GC Robust Multichip Average (RMA) module of Bioconductor package and the arrays were normalized against all of the 15 chips including those from normoxia, hypoxia, hypoxia-SU5416, and hypoxia-SU5416-so
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ankit,A,Desai
| | Sample_contact_email | adesai1@gmail.com
| | Sample_contact_phone | 312-523-7931
| | Sample_contact_fax | 773-834-2687
| | Sample_contact_laboratory | Joe G.N. Garcia Lab / Center for Integrative Science
| | Sample_contact_department | Medicine
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 929 East 57th Street, Room W403R
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184875/suppl/GSM184875.CEL.gz
| | Sample_series_id | GSE8078
| | Sample_series_id | GSE8134
| | Sample_data_row_count | 31099
| | |
|
GSM184876 | GPL1355 |
|
Dahl Salt Sensitive Rat Lung- Hypoxia alone rep1
|
Rat Lung
|
Genotype: Dahl Salt Sensitive Rats with Hypoxia alone
Weights: 250-350 grams
|
Gene expression data from rat lungs exposed to FiO2 of ~9.5% (hypoxia).
|
| Sample_geo_accession | GSM184876
| | Sample_status | Public on Jun 15 2007
| | Sample_submission_date | Apr 26 2007
| | Sample_last_update_date | Jun 14 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At the termination of each experiment, all animals were euthanized by exsanguination under anesthesia in accordance with institutional guidelines. The pulmonary vasculature was perfused via the pulmonary artery with sterile ph
| | Sample_growth_protocol_ch1 | Not Applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GC Robust Multichip Average (RMA) module of Bioconductor package and the arrays were normalized against all of the 15 chips including those from normoxia, hypoxia, hypoxia-SU5416, and hypoxia-SU5416-so
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ankit,A,Desai
| | Sample_contact_email | adesai1@gmail.com
| | Sample_contact_phone | 312-523-7931
| | Sample_contact_fax | 773-834-2687
| | Sample_contact_laboratory | Joe G.N. Garcia Lab / Center for Integrative Science
| | Sample_contact_department | Medicine
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 929 East 57th Street, Room W403R
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184876/suppl/GSM184876.CEL.gz
| | Sample_series_id | GSE8078
| | Sample_series_id | GSE8134
| | Sample_data_row_count | 31099
| | |
|
GSM184877 | GPL1355 |
|
Dahl Salt Sensitive Rat Lung- Hypoxia alone rep2
|
Rat Lung
|
Genotype: Dahl Salt Sensitive Rats with Hypoxia alone
Weights: 250-350 grams
|
Gene expression data from rat lungs exposed to FiO2 of ~9.5% (hypoxia).
|
| Sample_geo_accession | GSM184877
| | Sample_status | Public on Jun 15 2007
| | Sample_submission_date | Apr 26 2007
| | Sample_last_update_date | Jun 14 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At the termination of each experiment, all animals were euthanized by exsanguination under anesthesia in accordance with institutional guidelines. The pulmonary vasculature was perfused via the pulmonary artery with sterile ph
| | Sample_growth_protocol_ch1 | Not Applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GC Robust Multichip Average (RMA) module of Bioconductor package and the arrays were normalized against all of the 15 chips including those from normoxia, hypoxia, hypoxia-SU5416, and hypoxia-SU5416-so
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ankit,A,Desai
| | Sample_contact_email | adesai1@gmail.com
| | Sample_contact_phone | 312-523-7931
| | Sample_contact_fax | 773-834-2687
| | Sample_contact_laboratory | Joe G.N. Garcia Lab / Center for Integrative Science
| | Sample_contact_department | Medicine
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 929 East 57th Street, Room W403R
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184877/suppl/GSM184877.CEL.gz
| | Sample_series_id | GSE8078
| | Sample_series_id | GSE8134
| | Sample_data_row_count | 31099
| | |
|
GSM184878 | GPL1355 |
|
Dahl Salt Sensitive Rat Lung- Hypoxia alone rep3
|
Rat Lung
|
Genotype: Dahl Salt Sensitive Rats with Hypoxia alone
Weights: 250-350 grams
|
Gene expression data from rat lungs exposed to FiO2 of ~9.5% (hypoxia).
|
| Sample_geo_accession | GSM184878
| | Sample_status | Public on Jun 15 2007
| | Sample_submission_date | Apr 26 2007
| | Sample_last_update_date | Jun 14 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At the termination of each experiment, all animals were euthanized by exsanguination under anesthesia in accordance with institutional guidelines. The pulmonary vasculature was perfused via the pulmonary artery with sterile ph
| | Sample_growth_protocol_ch1 | Not Applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GC Robust Multichip Average (RMA) module of Bioconductor package and the arrays were normalized against all of the 15 chips including those from normoxia, hypoxia, hypoxia-SU5416, and hypoxia-SU5416-so
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ankit,A,Desai
| | Sample_contact_email | adesai1@gmail.com
| | Sample_contact_phone | 312-523-7931
| | Sample_contact_fax | 773-834-2687
| | Sample_contact_laboratory | Joe G.N. Garcia Lab / Center for Integrative Science
| | Sample_contact_department | Medicine
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 929 East 57th Street, Room W403R
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184878/suppl/GSM184878.CEL.gz
| | Sample_series_id | GSE8078
| | Sample_series_id | GSE8134
| | Sample_data_row_count | 31099
| | |
|
GSM184879 | GPL1355 |
|
Dahl Salt Sensitive Rat Lung- Hypoxia alone rep4
|
Rat Lung
|
Genotype: Dahl Salt Sensitive Rats with Hypoxia alone
Weights: 250-350 grams
|
Gene expression data from rat lungs exposed to FiO2 of ~9.5% (hypoxia).
|
| Sample_geo_accession | GSM184879
| | Sample_status | Public on Jun 15 2007
| | Sample_submission_date | Apr 26 2007
| | Sample_last_update_date | Jun 14 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At the termination of each experiment, all animals were euthanized by exsanguination under anesthesia in accordance with institutional guidelines. The pulmonary vasculature was perfused via the pulmonary artery with sterile ph
| | Sample_growth_protocol_ch1 | Not Applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GC Robust Multichip Average (RMA) module of Bioconductor package and the arrays were normalized against all of the 15 chips including those from normoxia, hypoxia, hypoxia-SU5416, and hypoxia-SU5416-so
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ankit,A,Desai
| | Sample_contact_email | adesai1@gmail.com
| | Sample_contact_phone | 312-523-7931
| | Sample_contact_fax | 773-834-2687
| | Sample_contact_laboratory | Joe G.N. Garcia Lab / Center for Integrative Science
| | Sample_contact_department | Medicine
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 929 East 57th Street, Room W403R
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184879/suppl/GSM184879.CEL.gz
| | Sample_series_id | GSE8078
| | Sample_series_id | GSE8134
| | Sample_data_row_count | 31099
| | |
|
GSM184880 | GPL1355 |
|
Dahl Salt Sensitive Rat Lung- Hypoxia with SU-5416 rep1
|
Rat Lung
|
Genotype: Dahl Salt Sensitive Rats with Hypoxia and SU-5416
Weights: 250-350 grams
|
Gene expression data from rat lungs exposed to FiO2 of ~9.5% and SU-5416 (hypoxia-SU-5416).
|
| Sample_geo_accession | GSM184880
| | Sample_status | Public on Jun 15 2007
| | Sample_submission_date | Apr 26 2007
| | Sample_last_update_date | Jun 14 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At the termination of each experiment, all animals were euthanized by exsanguination under anesthesia in accordance with institutional guidelines. The pulmonary vasculature was perfused via the pulmonary artery with sterile ph
| | Sample_growth_protocol_ch1 | Not Applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GC Robust Multichip Average (RMA) module of Bioconductor package and the arrays were normalized against all of the 15 chips including those from normoxia, hypoxia, hypoxia-SU5416, and hypoxia-SU5416-so
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ankit,A,Desai
| | Sample_contact_email | adesai1@gmail.com
| | Sample_contact_phone | 312-523-7931
| | Sample_contact_fax | 773-834-2687
| | Sample_contact_laboratory | Joe G.N. Garcia Lab / Center for Integrative Science
| | Sample_contact_department | Medicine
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 929 East 57th Street, Room W403R
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184880/suppl/GSM184880.CEL.gz
| | Sample_series_id | GSE8078
| | Sample_series_id | GSE8134
| | Sample_data_row_count | 31099
| | |
|
GSM184881 | GPL1355 |
|
Dahl Salt Sensitive Rat Lung- Hypoxia with SU-5416 rep2
|
Rat Lung
|
Genotype: Dahl Salt Sensitive Rats with Hypoxia and SU-5416
Weights: 250-350 grams
|
Gene expression data from rat lungs exposed to FiO2 of ~9.5% and SU-5416 (hypoxia-SU-5416).
|
| Sample_geo_accession | GSM184881
| | Sample_status | Public on Jun 15 2007
| | Sample_submission_date | Apr 26 2007
| | Sample_last_update_date | Jun 14 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At the termination of each experiment, all animals were euthanized by exsanguination under anesthesia in accordance with institutional guidelines. The pulmonary vasculature was perfused via the pulmonary artery with sterile ph
| | Sample_growth_protocol_ch1 | Not Applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GC Robust Multichip Average (RMA) module of Bioconductor package and the arrays were normalized against all of the 15 chips including those from normoxia, hypoxia, hypoxia-SU5416, and hypoxia-SU5416-so
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ankit,A,Desai
| | Sample_contact_email | adesai1@gmail.com
| | Sample_contact_phone | 312-523-7931
| | Sample_contact_fax | 773-834-2687
| | Sample_contact_laboratory | Joe G.N. Garcia Lab / Center for Integrative Science
| | Sample_contact_department | Medicine
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 929 East 57th Street, Room W403R
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184881/suppl/GSM184881.CEL.gz
| | Sample_series_id | GSE8078
| | Sample_series_id | GSE8134
| | Sample_data_row_count | 31099
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GSM184882 | GPL1355 |
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Dahl Salt Sensitive Rat Lung- Hypoxia with SU-5416 rep3
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Rat Lung
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Genotype: Dahl Salt Sensitive Rats with Hypoxia and SU-5416
Weights: 250-350 grams
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Gene expression data from rat lungs exposed to FiO2 of ~9.5% and SU-5416 (hypoxia-SU-5416).
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| Sample_geo_accession | GSM184882
| | Sample_status | Public on Jun 15 2007
| | Sample_submission_date | Apr 26 2007
| | Sample_last_update_date | Jun 14 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | At the termination of each experiment, all animals were euthanized by exsanguination under anesthesia in accordance with institutional guidelines. The pulmonary vasculature was perfused via the pulmonary artery with sterile ph
| | Sample_growth_protocol_ch1 | Not Applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GC Robust Multichip Average (RMA) module of Bioconductor package and the arrays were normalized against all of the 15 chips including those from normoxia, hypoxia, hypoxia-SU5416, and hypoxia-SU5416-so
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ankit,A,Desai
| | Sample_contact_email | adesai1@gmail.com
| | Sample_contact_phone | 312-523-7931
| | Sample_contact_fax | 773-834-2687
| | Sample_contact_laboratory | Joe G.N. Garcia Lab / Center for Integrative Science
| | Sample_contact_department | Medicine
| | Sample_contact_institute | The University of Chicago
| | Sample_contact_address | 929 East 57th Street, Room W403R
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM184nnn/GSM184882/suppl/GSM184882.CEL.gz
| | Sample_series_id | GSE8078
| | Sample_series_id | GSE8134
| | Sample_data_row_count | 31099
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