Search results for the GEO ID: GSE8157  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM201542 | GPL570 |
|
Muscle PCOS pioglitazone 101
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201542
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 15 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201542/suppl/GSM201542.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201543 | GPL570 |
|
Muscle PCOS pioglitazone 121
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201543
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 15 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201543/suppl/GSM201543.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201544 | GPL570 |
|
Muscle PCOS pioglitazone 161
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201544
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 15 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201544/suppl/GSM201544.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201545 | GPL570 |
|
Muscle PCOS pioglitazone 201
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201545
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 15 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201545/suppl/GSM201545.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201829 | GPL570 |
|
Muscle PCOS pioglitazone 231
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201829
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201829/suppl/GSM201829.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201830 | GPL570 |
|
Muscle PCOS pioglitazon 251
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201830
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201830/suppl/GSM201830.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201831 | GPL570 |
|
Muscle PCOS pioglitazone 271
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201831
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201831/suppl/GSM201831.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201832 | GPL570 |
|
Muscle PCOS pioglitazone 31
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201832
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201832/suppl/GSM201832.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201833 | GPL570 |
|
Muscle PCOS pioglitazone 41
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201833
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201833/suppl/GSM201833.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201834 | GPL570 |
|
Muscle PCOS pioglitazone 81
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201834
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201834/suppl/GSM201834.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201835 | GPL570 |
|
Muscle PCOS after pioglitazone 102
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201835
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201835/suppl/GSM201835.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201836 | GPL570 |
|
Muscle PCOS after pioglitazone 122
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201836
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201836/suppl/GSM201836.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201838 | GPL570 |
|
Muscle PCOS after pioglitazone 202
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201838
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201838/suppl/GSM201838.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201839 | GPL570 |
|
Muscle PCOS after pioglitazone 232
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201839
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201839/suppl/GSM201839.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201840 | GPL570 |
|
Muscle PCOS after pioglitazone 252
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201840
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201840/suppl/GSM201840.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201841 | GPL570 |
|
Muscle PCOS after pioglitazone 272
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201841
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201841/suppl/GSM201841.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201842 | GPL570 |
|
Muscle PCOS after pioglitazone 32
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201842
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201842/suppl/GSM201842.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201843 | GPL570 |
|
Muscle PCOS after pioglitazone 42
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201843
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 16 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201843/suppl/GSM201843.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201849 | GPL570 |
|
Muscle PCOS control 2
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201849
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201849/suppl/GSM201849.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201850 | GPL570 |
|
Muscle PCOS control 3
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201850
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201850/suppl/GSM201850.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201851 | GPL570 |
|
Muscle PCOS control 6
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201851
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201851/suppl/GSM201851.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201852 | GPL570 |
|
Muscle PCOS control 7
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201852
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201852/suppl/GSM201852.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201853 | GPL570 |
|
Muscle PCOS control 8
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201853
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201853/suppl/GSM201853.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201854 | GPL570 |
|
Muscle PCOS control 9
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201854
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201854/suppl/GSM201854.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201855 | GPL570 |
|
Muscle PCOS control 10
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201855
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201855/suppl/GSM201855.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201856 | GPL570 |
|
Muscle PCOS control 11
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201856
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201856/suppl/GSM201856.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201857 | GPL570 |
|
Muscle PCOS control 12
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201857
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201857/suppl/GSM201857.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201858 | GPL570 |
|
Muscle PCOS control 13
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201858
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201858/suppl/GSM201858.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201859 | GPL570 |
|
Muscle PCOS control 15
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201859
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201859/suppl/GSM201859.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201861 | GPL570 |
|
Muscle PCOS control 17
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201861
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201861/suppl/GSM201861.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201862 | GPL570 |
|
Muscle PCOS control 18
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201862
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201862/suppl/GSM201862.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201863 | GPL570 |
|
Muscle PCOS case 31
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201863
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201863/suppl/GSM201863.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201864 | GPL570 |
|
Muscle PCOS case 41
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201864
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201864/suppl/GSM201864.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201865 | GPL570 |
|
Muscle PCOS case 81
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201865
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 17 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201865/suppl/GSM201865.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201866 | GPL570 |
|
Muscle PCOS case 101
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201866
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201866/suppl/GSM201866.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201867 | GPL570 |
|
Muscle PCOS case 121
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201867
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201867/suppl/GSM201867.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201868 | GPL570 |
|
Muscle PCOS case 161
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201868
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201868/suppl/GSM201868.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201869 | GPL570 |
|
Muscle PCOS case 201
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201869
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201869/suppl/GSM201869.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201870 | GPL570 |
|
Muscle PCOS case 231
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201870
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201870/suppl/GSM201870.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201871 | GPL570 |
|
Muscle PCOS case 251
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201871
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201871/suppl/GSM201871.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
|
GSM201872 | GPL570 |
|
Muscle PCOS case 271
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
Vastus lateralis muscle
|
| Sample_geo_accession | GSM201872
| | Sample_status | Public on Nov 10 2008
| | Sample_submission_date | Jun 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Frozen muscle tissue was homogenized in Trizol with a Polytron Homogenizer and total RNA was purified using TRIzol Reagent including an extra step after phase separation with chloroform. Briefly, 1 volume of phenol-chloroform-isoamylalcohol (25-24-1) was added to the aqueous phase and spun at 10.000 x g for 10 minutes at 4˚C. Then, 1 volume of chloroform was added to the aqueous phase and spun at 12.000 x g for 20 minutes at 4˚C before RNA precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | One µg purified total RNA was converted to biotin-labeled aRNA using the MessageAmpTM II-Biotin single round aRNA amplification kit.
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | The R statistical software was applied for data analysis. The RMA method was used for global background correction and constant normalization was used for normalization. Gene expression index calculation was done using model based index calculation (MBEI). Only perfect match probes were included in data analysis. Welch two sample t-test for paired data was used to calculate p-values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vibe,,Skov
| | Sample_contact_email | vibe.skov@ouh.regionsyddanmark.dk
| | Sample_contact_phone | +4565412837
| | Sample_contact_department | Biochemistry, Genetics, and Pharmacology
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Sdr. Boulevard 29
| | Sample_contact_city | Odense C
| | Sample_contact_zip/postal_code | 5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM201nnn/GSM201872/suppl/GSM201872.CEL.gz
| | Sample_series_id | GSE8157
| | Sample_data_row_count | 54675
| | |
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(2 groups will be compared at a time) |
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