Search results for the GEO ID: GSE8167 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM202197 | GPL570 |
|
Small intestinal GIST 1
|
Total RNA from human small intestinal GIST.
|
Gender: female
Age: 61
Tumor size: 3
KIT mutation: Exon 9
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202197
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202197/suppl/GSM202197.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202198 | GPL570 |
|
Gastric GIST 1
|
Total RNA from human gastric GIST.
|
Gender: female
Age: 64
Tumor size: 4
KIT mutation: Wild type
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202198
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202198/suppl/GSM202198.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202199 | GPL570 |
|
Gastric GIST 2
|
Total RNA from human gastric GIST.
|
Gender: female
Age: 64
Tumor size: 4
KIT mutation: Wild type
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202199
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202199/suppl/GSM202199.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202200 | GPL570 |
|
Gastric GIST 3
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 68
Tumor size: 19
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202200
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202200/suppl/GSM202200.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202201 | GPL570 |
|
Gastric GIST 4
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 54
Tumor size: 10
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202201
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202201/suppl/GSM202201.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202202 | GPL570 |
|
Small intestinal GIST 2
|
Total RNA from human small intestinal GIST.
|
Gender: male
Age: 68
Tumor size: 4
KIT mutation: Exon 9
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202202
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202202/suppl/GSM202202.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202203 | GPL570 |
|
Small intestinal GIST 3
|
Total RNA from human small intestinal GIST.
|
Gender: male
Age: 77
Tumor size: 4
KIT mutation: Wild type
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202203
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202203/suppl/GSM202203.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202204 | GPL570 |
|
Gastric GIST 5
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 56
Tumor size: 38
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202204
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202204/suppl/GSM202204.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202205 | GPL570 |
|
Gastric GIST 6
|
Total RNA from human gastric GIST.
|
Gender: female
Age: 40
Tumor size: 10
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202205
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202205/suppl/GSM202205.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202206 | GPL570 |
|
Gastric GIST 7
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 58
Tumor size: 13
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202206
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202206/suppl/GSM202206.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202207 | GPL570 |
|
Gastric GIST 8
|
Total RNA from human gastric GIST.
|
Gender: female
Age: 55
Tumor size: 6
KIT mutation: Wild type
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202207
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202207/suppl/GSM202207.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202208 | GPL570 |
|
Gastric GIST 9
|
Total RNA from human gastric GIST.
|
Gender: female
Age: 69
Tumor size: 20
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202208
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202208/suppl/GSM202208.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202209 | GPL570 |
|
Gastric GIST 10
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 50
Tumor size: 21
KIT mutation: Wild type
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202209
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202209/suppl/GSM202209.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202210 | GPL570 |
|
Gastric GIST 11
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 51
Tumor size: 12
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202210
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202210/suppl/GSM202210.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202211 | GPL570 |
|
Gastric GIST 12
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 71
Tumor size: 6
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202211
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202211/suppl/GSM202211.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202212 | GPL570 |
|
Gastric GIST 13
|
Total RNA from human gastric GIST.
|
Gender: female
Age: 63
Tumor size: 13
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202212
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202212/suppl/GSM202212.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202213 | GPL570 |
|
Gastric GIST 14
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 52
Tumor size: 7
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202213
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202213/suppl/GSM202213.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202214 | GPL570 |
|
Small intestinal GIST 4
|
Total RNA from human small intestinal GIST.
|
Gender: male
Age: 76
Tumor size: 7
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202214
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202214/suppl/GSM202214.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202215 | GPL570 |
|
Small intestinal GIST 5
|
Total RNA from human small intestinal GIST.
|
Gender: male
Age: 34
Tumor size: 18
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202215
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202215/suppl/GSM202215.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202216 | GPL570 |
|
Gastric GIST 15
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 81
Tumor size: 6
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202216
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202216/suppl/GSM202216.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202217 | GPL570 |
|
Gastric GIST 16
|
Total RNA from human gastric GIST.
|
Gender: female
Age: 41
Tumor size: 4
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202217
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202217/suppl/GSM202217.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202218 | GPL570 |
|
Gastric GIST 17
|
Total RNA from human gastric GIST.
|
Gender: female
Age: 52
Tumor size: 5
KIT mutation: Wild type
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202218
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202218/suppl/GSM202218.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202219 | GPL570 |
|
Small intestinal GIST 6
|
Total RNA from human small intestinal GIST.
|
Gender: male
Age: 68
Tumor size: 7
KIT mutation: Exon 9
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202219
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202219/suppl/GSM202219.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202220 | GPL570 |
|
Gastric GIST 18
|
Total RNA from human gastric GIST.
|
Gender: female
Age: 72
Tumor size: 25
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202220
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202220/suppl/GSM202220.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202221 | GPL570 |
|
Gastric GIST 19
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 68
Tumor size: 17
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202221
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202221/suppl/GSM202221.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202222 | GPL570 |
|
Small intestinal GIST 7
|
Total RNA from human small intestinal GIST.
|
Gender: male
Age: 82
Tumor size: 4
KIT mutation: Exon 9
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202222
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202222/suppl/GSM202222.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202223 | GPL570 |
|
Gastric GIST 20
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 61
Tumor size: 8
KIT mutation: Wild type
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202223
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202223/suppl/GSM202223.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202224 | GPL570 |
|
Small intestinal GIST 8
|
Total RNA from human small intestinal GIST.
|
Gender: female
Age: 61
Tumor size: 12
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202224
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202224/suppl/GSM202224.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202225 | GPL570 |
|
Gastric GIST 21
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 69
Tumor size: 7
KIT mutation: Wild type
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202225
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202225/suppl/GSM202225.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202226 | GPL570 |
|
Gastric GIST 22
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 47
Tumor size: 4
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202226
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202226/suppl/GSM202226.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202227 | GPL570 |
|
Small intestinal GIST 9
|
Total RNA from human small intestinal GIST.
|
Gender: female
Age: 68
Tumor size: 6
KIT mutation: Wild type
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202227
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202227/suppl/GSM202227.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
GSM202228 | GPL570 |
|
Gastric GIST 23
|
Total RNA from human gastric GIST.
|
Gender: male
Age: 71
Tumor size: 11
KIT mutation: Exon 11
|
Frozen tumour specimens from untreated GIST of the stomach or small intestine.
|
Sample_geo_accession | GSM202228
| Sample_status | Public on Jun 15 2008
| Sample_submission_date | Jun 18 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using IsoGen lysis buffer following manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Scanned on a GeneArray scanner.
| Sample_scan_protocol | Images were quantified using Microarray Analysis Suite version 4.0 software (Affymetrix).
| Sample_data_processing | The data were analyzed and normalized using MAS5 algorithm with the ArrayAssist 4.X. software.
| Sample_platform_id | GPL570
| Sample_contact_name | Umio,,Yamaguchi
| Sample_contact_email | umioy@yahoo.co.jp
| Sample_contact_department | Chemotherapy
| Sample_contact_institute | NCCRI
| Sample_contact_address | 5-1-1, Tsukiji
| Sample_contact_city | Chuo
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 104-0045
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM202nnn/GSM202228/suppl/GSM202228.CEL.gz
| Sample_series_id | GSE8167
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|