Search results for the GEO ID: GSE8218  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM203261 | GPL96 |
|
R421P00048
|
prostate cancer sample
|
Percentage of Tumor: 55%
Percentage of Stroma: 25%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203261
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203261/suppl/GSM203261.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203262 | GPL96 |
|
R422P00092
|
prostate cancer sample
|
Percentage of Tumor: 50%
Percentage of Stroma: 40%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 15%
|
prostate
|
| Sample_geo_accession | GSM203262
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203262/suppl/GSM203262.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203263 | GPL96 |
|
R423P00094
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 40%
Percentage of BPH: 40%
Percentage of Atrophic Gland: 20%
|
prostate
|
| Sample_geo_accession | GSM203263
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203263/suppl/GSM203263.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203264 | GPL96 |
|
R424P00100
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 50%
Percentage of BPH: 50%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203264
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203264/suppl/GSM203264.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203265 | GPL96 |
|
R425P00102
|
prostate cancer sample
|
Percentage of Tumor: 60%
Percentage of Stroma: 30%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203265
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203265/suppl/GSM203265.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203266 | GPL96 |
|
R426P00145
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 86%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203266
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203266/suppl/GSM203266.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203267 | GPL96 |
|
R427P00146
|
prostate cancer sample
|
Percentage of Tumor: 50%
Percentage of Stroma: 40%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 2%
|
prostate
|
| Sample_geo_accession | GSM203267
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203267/suppl/GSM203267.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203268 | GPL96 |
|
R428P00155
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 82%
Percentage of BPH: 10%
Percentage of Atrophic Gland: 7%
|
prostate
|
| Sample_geo_accession | GSM203268
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203268/suppl/GSM203268.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203269 | GPL96 |
|
R429P00163
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 100%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203269
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203269/suppl/GSM203269.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203270 | GPL96 |
|
R430P00182
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 67%
Percentage of BPH: 27%
Percentage of Atrophic Gland: 2%
|
prostate
|
| Sample_geo_accession | GSM203270
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203270/suppl/GSM203270.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203271 | GPL96 |
|
R431P00183
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 90%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 2%
|
prostate
|
| Sample_geo_accession | GSM203271
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203271/suppl/GSM203271.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203272 | GPL96 |
|
R432P00185
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 68%
Percentage of BPH: 31%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203272
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203272/suppl/GSM203272.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203273 | GPL96 |
|
R433P00224
|
prostate cancer sample
|
Percentage of Tumor: 80%
Percentage of Stroma: 4%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203273
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203273/suppl/GSM203273.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203274 | GPL96 |
|
R434P00230
|
prostate cancer sample
|
Percentage of Tumor: 50%
Percentage of Stroma: 50%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203274
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203274/suppl/GSM203274.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203275 | GPL96 |
|
R435P00262
|
prostate cancer sample
|
Percentage of Tumor: 35%
Percentage of Stroma: 45%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 20%
|
prostate
|
| Sample_geo_accession | GSM203275
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203275/suppl/GSM203275.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203276 | GPL96 |
|
R436P00056
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 55%
Percentage of BPH: 37%
Percentage of Atrophic Gland: 5%
|
prostate
|
| Sample_geo_accession | GSM203276
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203276/suppl/GSM203276.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203277 | GPL96 |
|
R437P00057
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 55%
Percentage of BPH: 40%
Percentage of Atrophic Gland: 2%
|
prostate
|
| Sample_geo_accession | GSM203277
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203277/suppl/GSM203277.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203278 | GPL96 |
|
R438P00060
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 98%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 12%
|
prostate
|
| Sample_geo_accession | GSM203278
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203278/suppl/GSM203278.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203279 | GPL96 |
|
R439P00089
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 94%
Percentage of BPH: 4%
Percentage of Atrophic Gland: 2%
|
prostate
|
| Sample_geo_accession | GSM203279
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203279/suppl/GSM203279.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203280 | GPL96 |
|
R440P00121
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 63%
Percentage of BPH: 26%
Percentage of Atrophic Gland: 8%
|
prostate
|
| Sample_geo_accession | GSM203280
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203280/suppl/GSM203280.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203281 | GPL96 |
|
R441P00225
|
prostate cancer sample
|
Percentage of Tumor: 70%
Percentage of Stroma: 20%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203281
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203281/suppl/GSM203281.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203282 | GPL96 |
|
R442P00227
|
prostate cancer sample
|
Percentage of Tumor: 70%
Percentage of Stroma: 25%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203282
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203282/suppl/GSM203282.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203283 | GPL96 |
|
R456P00301
|
normal prostate sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 80%
Percentage of BPH: 10%
Percentage of Atrophic Gland: 8%
|
prostate
|
| Sample_geo_accession | GSM203283
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203283/suppl/GSM203283.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203284 | GPL96 |
|
R457P00303
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 46%
Percentage of BPH: 46%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203284
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203284/suppl/GSM203284.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203285 | GPL96 |
|
R458P00307
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 96%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203285
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203285/suppl/GSM203285.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203286 | GPL96 |
|
R459P00309
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 66%
Percentage of BPH: 29%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203286
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203286/suppl/GSM203286.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203287 | GPL96 |
|
R460P00321
|
prostate cancer sample
|
Percentage of Tumor: 21%
Percentage of Stroma: 59%
Percentage of BPH: 16%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203287
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203287/suppl/GSM203287.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203288 | GPL96 |
|
R461P00322
|
prostate cancer sample
|
Percentage of Tumor: 3%
Percentage of Stroma: 85%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 8%
|
prostate
|
| Sample_geo_accession | GSM203288
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203288/suppl/GSM203288.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203289 | GPL96 |
|
R462P00324
|
prostate cancer sample
|
Percentage of Tumor: 8%
Percentage of Stroma: 74%
Percentage of BPH: 5%
Percentage of Atrophic Gland: 13%
|
prostate
|
| Sample_geo_accession | GSM203289
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203289/suppl/GSM203289.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203290 | GPL96 |
|
R463P00344
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 53%
Percentage of BPH: 35%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203290
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203290/suppl/GSM203290.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203291 | GPL96 |
|
R464P00422
|
prostate cancer sample
|
Percentage of Tumor: 57%
Percentage of Stroma: 35%
Percentage of BPH: 4%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203291
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203291/suppl/GSM203291.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203292 | GPL96 |
|
R465P00426
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 92%
Percentage of BPH: 4%
Percentage of Atrophic Gland: 2%
|
prostate
|
| Sample_geo_accession | GSM203292
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203292/suppl/GSM203292.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203293 | GPL96 |
|
R466P00431
|
prostate cancer sample
|
Percentage of Tumor: 14%
Percentage of Stroma: 71%
Percentage of BPH: 5%
Percentage of Atrophic Gland: 9%
|
prostate
|
| Sample_geo_accession | GSM203293
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203293/suppl/GSM203293.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203294 | GPL96 |
|
R467P00436
|
prostate cancer sample
|
Percentage of Tumor: 73%
Percentage of Stroma: 22%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203294
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203294/suppl/GSM203294.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203295 | GPL96 |
|
R468P00438
|
prostate cancer sample
|
Percentage of Tumor: 70%
Percentage of Stroma: 29%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203295
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203295/suppl/GSM203295.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203296 | GPL96 |
|
R469P00501
|
prostate cancer sample
|
Percentage of Tumor: 59%
Percentage of Stroma: 34%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203296
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203296/suppl/GSM203296.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203297 | GPL96 |
|
R481P00302
|
normal prostate sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 63%
Percentage of BPH: 26%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203297
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203297/suppl/GSM203297.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203298 | GPL96 |
|
R482P00304
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 75%
Percentage of BPH: 19%
Percentage of Atrophic Gland: 5%
|
prostate
|
| Sample_geo_accession | GSM203298
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203298/suppl/GSM203298.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203299 | GPL96 |
|
R483P00305
|
prostate cancer sample
|
Percentage of Tumor: 20%
Percentage of Stroma: 72%
Percentage of BPH: 5%
Percentage of Atrophic Gland: 2%
|
prostate
|
| Sample_geo_accession | GSM203299
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203299/suppl/GSM203299.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203300 | GPL96 |
|
R484P00306
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 78%
Percentage of BPH: 14%
Percentage of Atrophic Gland: 9%
|
prostate
|
| Sample_geo_accession | GSM203300
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203300/suppl/GSM203300.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203301 | GPL96 |
|
R485P00308
|
prostate cancer sample
|
Percentage of Tumor: 34%
Percentage of Stroma: 57%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203301
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203301/suppl/GSM203301.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203302 | GPL96 |
|
R487P00311
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 72%
Percentage of BPH: 24%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203302
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203302/suppl/GSM203302.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203303 | GPL96 |
|
R488P00312
|
prostate cancer sample
|
Percentage of Tumor: 9%
Percentage of Stroma: 78%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 12%
|
prostate
|
| Sample_geo_accession | GSM203303
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203303/suppl/GSM203303.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203304 | GPL96 |
|
R489P00323
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 84%
Percentage of BPH: 12%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203304
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203304/suppl/GSM203304.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203305 | GPL96 |
|
R490P00325
|
prostate cancer sample
|
Percentage of Tumor: 43%
Percentage of Stroma: 50%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 2%
|
prostate
|
| Sample_geo_accession | GSM203305
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203305/suppl/GSM203305.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203306 | GPL96 |
|
R491P00345
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 84%
Percentage of BPH: 13%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203306
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203306/suppl/GSM203306.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203307 | GPL96 |
|
R492P00424
|
prostate cancer sample
|
Percentage of Tumor: 46%
Percentage of Stroma: 45%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203307
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203307/suppl/GSM203307.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203308 | GPL96 |
|
R493P00433
|
prostate cancer sample
|
Percentage of Tumor: 5%
Percentage of Stroma: 70%
Percentage of BPH: 7%
Percentage of Atrophic Gland: 15%
|
prostate
|
| Sample_geo_accession | GSM203308
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203308/suppl/GSM203308.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203309 | GPL96 |
|
R494P00442
|
prostate cancer sample
|
Percentage of Tumor: 70%
Percentage of Stroma: 26%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203309
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203309/suppl/GSM203309.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203310 | GPL96 |
|
R495P00447
|
prostate cancer sample
|
Percentage of Tumor: 46%
Percentage of Stroma: 45%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203310
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203310/suppl/GSM203310.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203311 | GPL96 |
|
R496P00521
|
prostate cancer sample
|
Percentage of Tumor: 48%
Percentage of Stroma: 36%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 9%
|
prostate
|
| Sample_geo_accession | GSM203311
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203311/suppl/GSM203311.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203312 | GPL96 |
|
R521P00428
|
prostate cancer sample
|
Percentage of Tumor: 9%
Percentage of Stroma: 67%
Percentage of BPH: 14%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203312
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203312/suppl/GSM203312.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203313 | GPL96 |
|
R522P00584
|
prostate cancer sample
|
Percentage of Tumor: 33%
Percentage of Stroma: 60%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203313
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203313/suppl/GSM203313.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203314 | GPL96 |
|
R523P00585
|
prostate cancer sample
|
Percentage of Tumor: 67%
Percentage of Stroma: 24%
Percentage of BPH: 9%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203314
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203314/suppl/GSM203314.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203315 | GPL96 |
|
R524P00603
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 68%
Percentage of BPH: 21%
Percentage of Atrophic Gland: 8%
|
prostate
|
| Sample_geo_accession | GSM203315
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203315/suppl/GSM203315.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203316 | GPL96 |
|
R525P00604
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 69%
Percentage of BPH: 22%
Percentage of Atrophic Gland: 6%
|
prostate
|
| Sample_geo_accession | GSM203316
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203316/suppl/GSM203316.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203317 | GPL96 |
|
R526P00605
|
prostate cancer sample
|
Percentage of Tumor: 26%
Percentage of Stroma: 57%
Percentage of BPH: 6%
Percentage of Atrophic Gland: 7%
|
prostate
|
| Sample_geo_accession | GSM203317
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203317/suppl/GSM203317.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203318 | GPL96 |
|
R527P00606
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 62%
Percentage of BPH: 37%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203318
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203318/suppl/GSM203318.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203319 | GPL96 |
|
R528P00607
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 50%
Percentage of BPH: 38%
Percentage of Atrophic Gland: 11%
|
prostate
|
| Sample_geo_accession | GSM203319
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203319/suppl/GSM203319.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203320 | GPL96 |
|
R529P00609
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 58%
Percentage of BPH: 37%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203320
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203320/suppl/GSM203320.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203321 | GPL96 |
|
R530P00643
|
prostate cancer sample
|
Percentage of Tumor: 34%
Percentage of Stroma: 56%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203321
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203321/suppl/GSM203321.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203322 | GPL96 |
|
R531P00647
|
prostate cancer sample
|
Percentage of Tumor: 44%
Percentage of Stroma: 39%
Percentage of BPH: 8%
Percentage of Atrophic Gland: 7%
|
prostate
|
| Sample_geo_accession | GSM203322
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203322/suppl/GSM203322.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203323 | GPL96 |
|
R532P00648
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 68%
Percentage of BPH: 19%
Percentage of Atrophic Gland: 11%
|
prostate
|
| Sample_geo_accession | GSM203323
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203323/suppl/GSM203323.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203324 | GPL96 |
|
R533P00403
|
prostate cancer sample
|
Percentage of Tumor: 56%
Percentage of Stroma: 41%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203324
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203324/suppl/GSM203324.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203325 | GPL96 |
|
R534P00429
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 80%
Percentage of BPH: 9%
Percentage of Atrophic Gland: 8%
|
prostate
|
| Sample_geo_accession | GSM203325
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203325/suppl/GSM203325.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203326 | GPL96 |
|
R535P00441
|
prostate cancer sample
|
Percentage of Tumor: 38%
Percentage of Stroma: 53%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 5%
|
prostate
|
| Sample_geo_accession | GSM203326
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203326/suppl/GSM203326.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203327 | GPL96 |
|
R536P00445
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 59%
Percentage of BPH: 29%
Percentage of Atrophic Gland: 11%
|
prostate
|
| Sample_geo_accession | GSM203327
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203327/suppl/GSM203327.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203328 | GPL96 |
|
R537P00446
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 59%
Percentage of BPH: 29%
Percentage of Atrophic Gland: 11%
|
prostate
|
| Sample_geo_accession | GSM203328
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203328/suppl/GSM203328.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203329 | GPL96 |
|
R538P00541
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 88%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203329
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203329/suppl/GSM203329.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203330 | GPL96 |
|
R539P00546
|
prostate cancer sample
|
Percentage of Tumor: 6%
Percentage of Stroma: 65%
Percentage of BPH: 20%
Percentage of Atrophic Gland: 8%
|
prostate
|
| Sample_geo_accession | GSM203330
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203330/suppl/GSM203330.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203331 | GPL96 |
|
R540P00550
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 70%
Percentage of BPH: 20%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203331
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203331/suppl/GSM203331.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203332 | GPL96 |
|
R541P00728
|
prostate cancer sample
|
Percentage of Tumor: 11%
Percentage of Stroma: 68%
Percentage of BPH: 12%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203332
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203332/suppl/GSM203332.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203333 | GPL96 |
|
R561P00761
|
prostate cancer sample
|
Percentage of Tumor: 80%
Percentage of Stroma: 20%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203333
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203333/suppl/GSM203333.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203334 | GPL96 |
|
R562P00726
|
prostate cancer sample
|
Percentage of Tumor: 62%
Percentage of Stroma: 32%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 2%
|
prostate
|
| Sample_geo_accession | GSM203334
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203334/suppl/GSM203334.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203335 | GPL96 |
|
R563P00723
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 71%
Percentage of BPH: 10%
Percentage of Atrophic Gland: 16%
|
prostate
|
| Sample_geo_accession | GSM203335
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203335/suppl/GSM203335.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203336 | GPL96 |
|
R564P00721
|
prostate cancer sample
|
Percentage of Tumor: 24%
Percentage of Stroma: 51%
Percentage of BPH: 11%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203336
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203336/suppl/GSM203336.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203337 | GPL96 |
|
R565P00156
|
prostate cancer sample
|
Percentage of Tumor: 28%
Percentage of Stroma: 58%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 6%
|
prostate
|
| Sample_geo_accession | GSM203337
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203337/suppl/GSM203337.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203338 | GPL96 |
|
R566P00154
|
prostate cancer sample
|
Percentage of Tumor: 53%
Percentage of Stroma: 42%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203338
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203338/suppl/GSM203338.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203339 | GPL96 |
|
R567P00147
|
prostate cancer sample
|
Percentage of Tumor: 38%
Percentage of Stroma: 61%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203339
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203339/suppl/GSM203339.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203340 | GPL96 |
|
R568P00766
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 93%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203340
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203340/suppl/GSM203340.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203341 | GPL96 |
|
R569P00764
|
prostate cancer sample
|
Percentage of Tumor: 75%
Percentage of Stroma: 23%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203341
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203341/suppl/GSM203341.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203342 | GPL96 |
|
R570P00762
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 70%
Percentage of BPH: 22%
Percentage of Atrophic Gland: 2%
|
prostate
|
| Sample_geo_accession | GSM203342
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203342/suppl/GSM203342.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203343 | GPL96 |
|
R581P01061
|
prostate cancer sample
|
Percentage of Tumor: 24%
Percentage of Stroma: 58%
Percentage of BPH: 10%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203343
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203343/suppl/GSM203343.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203344 | GPL96 |
|
R582P01062
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 73%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 12%
|
prostate
|
| Sample_geo_accession | GSM203344
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203344/suppl/GSM203344.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203345 | GPL96 |
|
R583P01063
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 62%
Percentage of BPH: 19%
Percentage of Atrophic Gland: 9%
|
prostate
|
| Sample_geo_accession | GSM203345
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203345/suppl/GSM203345.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203346 | GPL96 |
|
R584P01064
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 62%
Percentage of BPH: 30%
Percentage of Atrophic Gland: 5%
|
prostate
|
| Sample_geo_accession | GSM203346
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203346/suppl/GSM203346.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203347 | GPL96 |
|
R585P01065
|
prostate cancer sample
|
Percentage of Tumor: 70%
Percentage of Stroma: 29%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203347
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203347/suppl/GSM203347.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203348 | GPL96 |
|
R586P01066
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 74%
Percentage of BPH: 20%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203348
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203348/suppl/GSM203348.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203349 | GPL96 |
|
R587P01067
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 82%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203349
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203349/suppl/GSM203349.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203350 | GPL96 |
|
R588P01069
|
prostate cancer sample
|
Percentage of Tumor: 2%
Percentage of Stroma: 63%
Percentage of BPH: 13%
Percentage of Atrophic Gland: 12%
|
prostate
|
| Sample_geo_accession | GSM203350
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203350/suppl/GSM203350.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203351 | GPL96 |
|
R589P01070
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 82%
Percentage of BPH: 5%
Percentage of Atrophic Gland: 12%
|
prostate
|
| Sample_geo_accession | GSM203351
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203351/suppl/GSM203351.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203352 | GPL96 |
|
R590P01071
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 80%
Percentage of BPH: 9%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203352
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203352/suppl/GSM203352.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203353 | GPL96 |
|
R591P01072
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 84%
Percentage of BPH: 7%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203353
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203353/suppl/GSM203353.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203354 | GPL96 |
|
R592P01081
|
normal prostate sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 72%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 17%
|
prostate
|
| Sample_geo_accession | GSM203354
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203354/suppl/GSM203354.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203355 | GPL96 |
|
R601P01083
|
normal prostate sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 92%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203355
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203355/suppl/GSM203355.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203356 | GPL96 |
|
R621P01206
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 81%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 9%
|
prostate
|
| Sample_geo_accession | GSM203356
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203356/suppl/GSM203356.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203357 | GPL96 |
|
R622P01005
|
prostate cancer sample
|
Percentage of Tumor: 9%
Percentage of Stroma: 78%
Percentage of BPH: 5%
Percentage of Atrophic Gland: 6%
|
prostate
|
| Sample_geo_accession | GSM203357
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203357/suppl/GSM203357.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203358 | GPL96 |
|
R623P01188
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 92%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203358
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203358/suppl/GSM203358.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203359 | GPL96 |
|
R624P00744
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 100%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203359
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203359/suppl/GSM203359.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203360 | GPL96 |
|
R625P00906
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 53%
Percentage of BPH: 32%
Percentage of Atrophic Gland: 13%
|
prostate
|
| Sample_geo_accession | GSM203360
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203360/suppl/GSM203360.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203361 | GPL96 |
|
R626P01184
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 64%
Percentage of BPH: 26%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203361
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203361/suppl/GSM203361.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203362 | GPL96 |
|
R641P00801
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 70%
Percentage of BPH: 19%
Percentage of Atrophic Gland: 6%
|
prostate
|
| Sample_geo_accession | GSM203362
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203362/suppl/GSM203362.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203363 | GPL96 |
|
R642P00802
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 70%
Percentage of BPH: 21%
Percentage of Atrophic Gland: 6%
|
prostate
|
| Sample_geo_accession | GSM203363
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203363/suppl/GSM203363.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203364 | GPL96 |
|
R643P00803
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 76%
Percentage of BPH: 14%
Percentage of Atrophic Gland: 7%
|
prostate
|
| Sample_geo_accession | GSM203364
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203364/suppl/GSM203364.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203365 | GPL96 |
|
R644P00804
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 76%
Percentage of BPH: 10%
Percentage of Atrophic Gland: 13%
|
prostate
|
| Sample_geo_accession | GSM203365
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203365/suppl/GSM203365.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203366 | GPL96 |
|
R645P00805
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 76%
Percentage of BPH: 17%
Percentage of Atrophic Gland: 5%
|
prostate
|
| Sample_geo_accession | GSM203366
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203366/suppl/GSM203366.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203367 | GPL96 |
|
R646P00806
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 88%
Percentage of BPH: 5%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203367
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203367/suppl/GSM203367.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203368 | GPL96 |
|
R647P01068
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 64%
Percentage of BPH: 31%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203368
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203368/suppl/GSM203368.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203369 | GPL96 |
|
R648P01085
|
prostate cancer sample
|
Percentage of Tumor: 35%
Percentage of Stroma: 52%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 12%
|
prostate
|
| Sample_geo_accession | GSM203369
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203369/suppl/GSM203369.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203370 | GPL96 |
|
R649P01087
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 67%
Percentage of BPH: 15%
Percentage of Atrophic Gland: 18%
|
prostate
|
| Sample_geo_accession | GSM203370
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203370/suppl/GSM203370.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203371 | GPL96 |
|
R650P01104
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 99%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
|
prostate
|
| Sample_geo_accession | GSM203371
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203371/suppl/GSM203371.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203372 | GPL96 |
|
R651P01105
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 70%
Percentage of BPH: 17%
Percentage of Atrophic Gland: 13%
|
prostate
|
| Sample_geo_accession | GSM203372
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203372/suppl/GSM203372.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203373 | GPL96 |
|
R652P01186
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 87%
Percentage of BPH: 9%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203373
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203373/suppl/GSM203373.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203374 | GPL96 |
|
R653P01205
|
prostate cancer sample
|
Percentage of Tumor: 61%
Percentage of Stroma: 36%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203374
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203374/suppl/GSM203374.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203375 | GPL96 |
|
R661P00807
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 88%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 9%
|
prostate
|
| Sample_geo_accession | GSM203375
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203375/suppl/GSM203375.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203376 | GPL96 |
|
R662P00808
|
prostate cancer sample
|
Percentage of Tumor: 67%
Percentage of Stroma: 31%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203376
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203376/suppl/GSM203376.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203377 | GPL96 |
|
R663P00904
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 97%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 2%
|
prostate
|
| Sample_geo_accession | GSM203377
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203377/suppl/GSM203377.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203378 | GPL96 |
|
R664P01207
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 75%
Percentage of BPH: 14%
Percentage of Atrophic Gland: 7%
|
prostate
|
| Sample_geo_accession | GSM203378
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203378/suppl/GSM203378.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203379 | GPL96 |
|
R668P01211
|
prostate cancer sample
|
Percentage of Tumor: 13%
Percentage of Stroma: 69%
Percentage of BPH: 11%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203379
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203379/suppl/GSM203379.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203380 | GPL96 |
|
R681P00686
|
prostate cancer sample
|
Percentage of Tumor: 14%
Percentage of Stroma: 54%
Percentage of BPH: 24%
Percentage of Atrophic Gland: 10%
|
prostate
|
| Sample_geo_accession | GSM203380
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203380/suppl/GSM203380.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203381 | GPL96 |
|
R682P00687
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 47%
Percentage of BPH: 46%
Percentage of Atrophic Gland: 7%
|
prostate
|
| Sample_geo_accession | GSM203381
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203381/suppl/GSM203381.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203382 | GPL96 |
|
R683P01102
|
prostate cancer sample
|
Percentage of Tumor: 41%
Percentage of Stroma: 40%
Percentage of BPH: 8%
Percentage of Atrophic Gland: 8%
|
prostate
|
| Sample_geo_accession | GSM203382
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203382/suppl/GSM203382.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203383 | GPL96 |
|
R684P01106
|
prostate cancer sample
|
Percentage of Tumor: 58%
Percentage of Stroma: 29%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 13%
|
prostate
|
| Sample_geo_accession | GSM203383
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203383/suppl/GSM203383.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203384 | GPL96 |
|
R685P01201
|
prostate cancer sample
|
Percentage of Tumor: 32%
Percentage of Stroma: 54%
Percentage of BPH: 9%
Percentage of Atrophic Gland: 5%
|
prostate
|
| Sample_geo_accession | GSM203384
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203384/suppl/GSM203384.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203385 | GPL96 |
|
R686P01236
|
prostate cancer sample
|
Percentage of Tumor: 34%
Percentage of Stroma: 47%
Percentage of BPH: 10%
Percentage of Atrophic Gland: 6%
|
prostate
|
| Sample_geo_accession | GSM203385
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203385/suppl/GSM203385.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203386 | GPL96 |
|
R701P01101
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 61%
Percentage of BPH: 27%
Percentage of Atrophic Gland: 11%
|
prostate
|
| Sample_geo_accession | GSM203386
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203386/suppl/GSM203386.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203387 | GPL96 |
|
R702P01103
|
prostate cancer sample
|
Percentage of Tumor: 0%
Percentage of Stroma: 85%
Percentage of BPH: 7%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203387
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203387/suppl/GSM203387.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203388 | GPL96 |
|
R703P01230
|
prostate cancer sample
|
Percentage of Tumor: 36%
Percentage of Stroma: 54%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 6%
|
prostate
|
| Sample_geo_accession | GSM203388
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203388/suppl/GSM203388.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203389 | GPL96 |
|
R704P01242
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203389
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203389/suppl/GSM203389.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203390 | GPL96 |
|
R705P01282
|
prostate cancer sample
|
Percentage of Tumor: 47%
Percentage of Stroma: 44%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 6%
|
prostate
|
| Sample_geo_accession | GSM203390
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203390/suppl/GSM203390.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203391 | GPL96 |
|
R706P01301
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203391
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203391/suppl/GSM203391.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203392 | GPL96 |
|
R707P01302
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203392
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203392/suppl/GSM203392.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203393 | GPL96 |
|
R708P01308
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203393
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203393/suppl/GSM203393.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203394 | GPL96 |
|
R721P00481
|
prostate cancer sample
|
Percentage of Tumor: 38%
Percentage of Stroma: 49%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 11%
|
prostate
|
| Sample_geo_accession | GSM203394
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203394/suppl/GSM203394.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203395 | GPL96 |
|
R722P00829
|
prostate cancer sample
|
Percentage of Tumor: 28%
Percentage of Stroma: 69%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203395
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203395/suppl/GSM203395.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203396 | GPL96 |
|
R723P00881
|
prostate cancer sample
|
Percentage of Tumor: 69%
Percentage of Stroma: 22%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 4%
|
prostate
|
| Sample_geo_accession | GSM203396
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203396/suppl/GSM203396.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203397 | GPL96 |
|
R724P00901
|
prostate cancer sample
|
Percentage of Tumor: 48%
Percentage of Stroma: 30%
Percentage of BPH: 17%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203397
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203397/suppl/GSM203397.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203398 | GPL96 |
|
R725P00941
|
prostate cancer sample
|
Percentage of Tumor: 78%
Percentage of Stroma: 13%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 5%
|
prostate
|
| Sample_geo_accession | GSM203398
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203398/suppl/GSM203398.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203399 | GPL96 |
|
R726P01003
|
prostate cancer sample
|
Percentage of Tumor: 33%
Percentage of Stroma: 66%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 1%
|
prostate
|
| Sample_geo_accession | GSM203399
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203399/suppl/GSM203399.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203400 | GPL96 |
|
R727P01204
|
prostate cancer sample
|
Percentage of Tumor: 62%
Percentage of Stroma: 31%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 3%
|
prostate
|
| Sample_geo_accession | GSM203400
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203400/suppl/GSM203400.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203401 | GPL96 |
|
R741P00668
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203401
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203401/suppl/GSM203401.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203402 | GPL96 |
|
R742P00670
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203402
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203402/suppl/GSM203402.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203403 | GPL96 |
|
R743P00701
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203403
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203403/suppl/GSM203403.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203404 | GPL96 |
|
R744P00748
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203404
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203404/suppl/GSM203404.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203405 | GPL96 |
|
R745P00782
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203405
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203405/suppl/GSM203405.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203406 | GPL96 |
|
R746P00821
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203406
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203406/suppl/GSM203406.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203407 | GPL96 |
|
R748P01234
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203407
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203407/suppl/GSM203407.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
GSM203408 | GPL96 |
|
R749P01262
|
prostate cancer sample
|
Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
|
prostate
|
| Sample_geo_accession | GSM203408
| | Sample_status | Public on Jun 22 2007
| | Sample_submission_date | Jun 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner.
| | Sample_data_processing | The data were analyzed and normalized with RMA.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yipeng,,Wang
| | Sample_contact_email | ywang@sdibr.org
| | Sample_contact_phone | 8585813960
| | Sample_contact_institute | Vaccine Research Institute of San Diego
| | Sample_contact_address |
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM203nnn/GSM203408/suppl/GSM203408.CEL.gz
| | Sample_series_id | GSE8218
| | Sample_data_row_count | 22283
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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