Search results for the GEO ID: GSE8341 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM206437 | GPL1355 |
|
mRNA quantitation of normal rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a normal heart
|
LV myocytes of normal rat was hybridized.
|
Sample_geo_accession | GSM206437
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 29 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by RNeasy mini spin column (Qiagen, Inc).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cDNA were prepared according to the Ovation Biotin RNA Amplification and Labeling System, NuGEN Technologies, Inc.
| Sample_hyb_protocol | 2 ug of cDNA were hybridized for 18 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean value for the internal control probe sets (defined by Affymetrix) was set to be 500.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206437/suppl/GSM206437.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206437/suppl/GSM206437.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206750 | GPL1355 |
|
mRNA quantitation of failed heart
|
19 weeks Dahl rat with a high-sodium diet
|
LV myocytes isolated from Dahl rat with a failed heart
|
LV myocytes of CHF rat was hybridized.
|
Sample_geo_accession | GSM206750
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by RNeasy mini spin column (Qiagen, Inc).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cDNA were prepared according to the Ovation Biotin RNA Amplification and Labeling System, NuGEN Technologies, Inc.
| Sample_hyb_protocol | 2 ug of cDNA were hybridized for 18 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean value for the internal control probe sets (defined by Affymetrix) was set to be 500.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206750/suppl/GSM206750.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206750/suppl/GSM206750.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206751 | GPL1355 |
|
Pre-IP genomic DNA of normal rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a normal heart
|
Pre-IP gemomic DNA of Dahl rat with a normal heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206751
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by a standard protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C on GeneChip Human Genome Array, and processed with the protocols of Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206751/suppl/GSM206751.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206751/suppl/GSM206751.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206752 | GPL1355 |
|
Pre-IP genomic DNA of failed rat heart
|
19 week old Dahl rat
|
LV myocytes isolated from Dahl rat with a failed heart
|
Pre-IP gemomic DNA of Dahl rat with a failed heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206752
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by a standard protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols of Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206752/suppl/GSM206752.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206752/suppl/GSM206752.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206753 | GPL1355 |
|
ChIP-on-chip with anti-H3 acetylation
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a normal heart
|
Anti-acetyalted H3 ChIP products of Dahl rat with a normal heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206753
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for acetylated H3.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206753/suppl/GSM206753.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206753/suppl/GSM206753.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206754 | GPL1355 |
|
ChIP-on-chip for anti-acetylated H4 products of normal rat heart
|
Pre-IP genomic DNA of normal rat heart
|
LV myocytes isolated from Dahl rat with a normal heart
|
Anti-acetyalted H4 ChIP products of Dahl rat with a normal heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206754
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for acetylated H4.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206754/suppl/GSM206754.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206754/suppl/GSM206754.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206755 | GPL1355 |
|
ChIP-on-chip for anti-dimethylated K4 products of normal rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a normal heart
|
Anti-dimethylated K4 ChIP products of Dahl rat with a normal heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206755
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for dimethylated K4.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206755/suppl/GSM206755.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206755/suppl/GSM206755.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206756 | GPL1355 |
|
ChIP-on-chip for anti-trimethylated K4 products of normal rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a normal heart
|
Anti-trimethylated K4 ChIP products of Dahl rat with a normal heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206756
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for trimethylated K4.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206756/suppl/GSM206756.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206756/suppl/GSM206756.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206757 | GPL1355 |
|
ChIP-on-chip for anti-dimethylated K9 products of normal rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a normal heart
|
Anti-dimethylated K9 ChIP products of Dahl rat with a normal heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206757
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for dimethylated K9.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206757/suppl/GSM206757.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206757/suppl/GSM206757.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206758 | GPL1355 |
|
ChIP-on-chip for anti-trimethylated K9 products of normal rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a normal heart
|
Anti-trimethylated K9 ChIP products of Dahl rat with a normal heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206758
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for trimethylated K9.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206758/suppl/GSM206758.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206758/suppl/GSM206758.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206759 | GPL1355 |
|
ChIP-on-chip for anti-trimethylated K20 products of normal rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a normal heart
|
Anti-trimethylated K20 ChIP products of Dahl rat with a normal heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206759
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for trimethylated K20.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206759/suppl/GSM206759.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206759/suppl/GSM206759.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206760 | GPL1355 |
|
ChIP-on-chip for anti-dimethylated K27 products of normal rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a normal heart
|
Anti-dimethylated K27 ChIP products of Dahl rat with a normal heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206760
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for dimethylated K27.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206760/suppl/GSM206760.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206760/suppl/GSM206760.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206761 | GPL1355 |
|
ChIP-on-chip for anti-acetylated H3 products of failed rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a failed heart
|
Anti-acetylated H3 ChIP products of Dahl rat with a failed heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206761
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for acetylated H3.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206761/suppl/GSM206761.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206761/suppl/GSM206761.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206762 | GPL1355 |
|
ChIP-on-chip for anti-acetylated H4 products of failed rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a failed heart
|
Anti-acetylated H4 ChIP products of Dahl rat with a failed heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206762
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for acetylated H4.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206762/suppl/GSM206762.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206762/suppl/GSM206762.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206763 | GPL1355 |
|
ChIP-on-chip for anti-dimethylated K4 products of failed rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a failed heart
|
Anti-dimethylated K4 ChIP products of Dahl rat with a failed heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206763
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for dimethylated K4.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206763/suppl/GSM206763.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206763/suppl/GSM206763.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206764 | GPL1355 |
|
ChIP-on-chip for anti-trimethylated K4 products of failed rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a failed heart
|
Anti-trimethylated K4 ChIP products of Dahl rat with a failed heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206764
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for trimethylated K4.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206764/suppl/GSM206764.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206764/suppl/GSM206764.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206765 | GPL1355 |
|
ChIP-on-chip for anti-dimethylated K9 products of failed rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a failed heart
|
Anti-dimethylated K9 ChIP products of Dahl rat with a failed heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206765
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for dimethylated K9.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206765/suppl/GSM206765.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206765/suppl/GSM206765.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206767 | GPL1355 |
|
ChIP-on-chip for anti-trimethylated K9 products of failed rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a failed heart
|
Anti-trimethylated K9 ChIP products of Dahl rat with a failed heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206767
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for trimethylated K9.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206767/suppl/GSM206767.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206767/suppl/GSM206767.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206768 | GPL1355 |
|
ChIP-on-chip for anti-trimethylated K20 products of failed rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a failed heart
|
Anti-trimethylated K20 ChIP products of Dahl rat with a failed heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206768
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for trimethylated K20.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206768/suppl/GSM206768.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206768/suppl/GSM206768.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
GSM206769 | GPL1355 |
|
ChIP-on-chip for anti-dimethylated K27 products of failed rat heart
|
19w Dahl rat
|
LV myocytes isolated from Dahl rat with a failed heart
|
Anti-dimethylated K27 ChIP products of Dahl rat with a failed heart was hybridized to Rat Genome 230 2.0 arrays.
|
Sample_geo_accession | GSM206769
| Sample_status | Public on Feb 19 2009
| Sample_submission_date | Jun 30 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | genomic
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | genomic DNA
| Sample_extract_protocol_ch1 | Genomic DNA was isolated by chromatin immunoprecipitation for dimethylated K27.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | DNA was fragmented, amplified with T7 RNA polymerase by in vitro trasncription, and labeled by Affymetrix labeling kit.
| Sample_hyb_protocol | Hybridized for 16 hr at 48C, and processed with the protocols for Affymetrix Encode arrays.
| Sample_scan_protocol | GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | The mean signal intenstiy for all probe sets were set to be 500 units.
| Sample_platform_id | GPL1355
| Sample_contact_name | Hiroyuki,,Mano
| Sample_contact_email | hmano@jichi.ac.jp
| Sample_contact_phone | +81-285-58-7449
| Sample_contact_fax | +81-285-44-7322
| Sample_contact_department | Division of Functional Genomics
| Sample_contact_institute | Jichi Medical University
| Sample_contact_address | 3311-1 Yakushiji
| Sample_contact_city | Shimotsukeshi
| Sample_contact_state | Tochigi
| Sample_contact_zip/postal_code | 329-0498
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206769/suppl/GSM206769.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM206nnn/GSM206769/suppl/GSM206769.CHP.gz
| Sample_series_id | GSE8341
| Sample_data_row_count | 31099
| |
|
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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