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Process data
Search results for the GEO ID: GSE8513
(Click on the check boxes provided under "Select for analysis", to initiate grouping)
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group.
Scroll down
)
GSM ID
GPL ID
Select for analysis
Title
Source name
Description
Characteristics
GSM211436
GPL1261
tumor tissue 3 weeks post virus injection mouse 1
human breast cancer implant in nude mice
tumor implant 3 weeks post virus injection
tumor tissue 3 weeks post virus injection
GSM211437
GPL1261
tumor tissue 3 weeks post virus injection mouse 2
human breast cancer implant in nude mice
tumor implant 3 weeks post virus injection
tumor tissue 3 weeks post virus injection
GSM211438
GPL1261
tumor tissue 3 weeks post virus injection mouse 3
human breast cancer implant in nude mice
tumor implant 3 weeks post virus injection
tumor tissue 3 weeks post virus injection
GSM211439
GPL1261
tumor tissue 3 weeks post virus injection mouse 4
human breast cancer implant in nude mice
tumor implant 3 weeks post virus injection
tumor tissue 3 weeks post virus injection
GSM211440
GPL1261
tumor tissue 3 week control (mixed sample from 4 mice)
human breast cancer implant in nude mice
tumor implant 3 weeks post PBS injection
tumor tissue 3 weeks control
GSM211441
GPL1261
tumor tissue 6 weeks post virus injection mouse 1
human breast cancer implant in nude mice
tumor implant 6 weeks post virus injection
tumor tissue 6 weeks post virus injection
GSM211442
GPL1261
tumor tissue 6 weeks post virus injection mouse 2
human breast cancer implant in nude mice
tumor implant 6 weeks post virus injection
tumor tissue 6 weeks post virus injection
GSM211443
GPL1261
tumor tissue 6 weeks post virus injection mouse 3
human breast cancer implant in nude mice
tumor implant 6 weeks post virus injection
tumor tissue 6 weeks post virus injection
GSM211444
GPL1261
tumor tissue 6 weeks post virus injection mouse4
human breast cancer implant in nude mice
tumor implant 6 weeks post virus injection
tumor tissue 6 weeks post virus injection
GSM211445
GPL1261
tumor tissue 6 week control (mixed sample from 4 mice)
human breast cancer implant in nude mice
tumor implant 6 weeks post PBS injection
tumor tissue 6 weeks control
Make groups for comparisons
(2 groups will be compared at a time)
Select GSMs and click on "Add groups"
Enter the group name here:
Select expression type
Transcripts profile based on;
A. Differential status (Up/Down regulation)
Regulation type
Up
Down
Up/Down
Fold change
2
4
6
8
10
p-value
0.05
0.01
0.001
0.0001
0.00001
B. Absolute calls (Transcribed/Not-detected)
Derive calls within/across groups
Within groups
Detection status
Transcribed
Not-detected
Both
Percentage detection
10
20
30
40
50
60
70
80
90
100
Across groups
Detection status
First group:
Transcribed
Not-detected
-
Second group:
Transcribed
Not-detected
Percentage detection
First group:
10
20
30
40
50
60
70
80
90
100
-
Second group:
10
20
30
40
50
60
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80
90
100
Filter results by number of probes
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