Search results for the GEO ID: GSE8605  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM183166 | GPL201 |
|
CaSki sample 1
|
CaSki
|
Cervical cancer cell line (HPV 16)
|
Gene expression data
|
| Sample_geo_accession | GSM183166
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183166/suppl/GSM183166.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183167 | GPL201 |
|
CaSki sample 2
|
CaSki
|
Cervical cancer cell line (HPV 16)
|
Gene expression data
|
| Sample_geo_accession | GSM183167
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183167/suppl/GSM183167.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183168 | GPL201 |
|
CC10B sample 1
|
CC10B
|
Cervical cancer cell line (HPV 45)
|
Gene expression data
|
| Sample_geo_accession | GSM183168
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183168/suppl/GSM183168.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183169 | GPL201 |
|
CC10B sample 2
|
CC10B
|
Cervical cancer cell line (HPV 45)
|
Gene expression data
|
| Sample_geo_accession | GSM183169
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183169/suppl/GSM183169.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183170 | GPL201 |
|
CSCC1 sample 1
|
CSCC1
|
Cervical cancer cell line (HPV 16)
|
Gene expression data
|
| Sample_geo_accession | GSM183170
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183170/suppl/GSM183170.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183171 | GPL201 |
|
CSCC1 sample 2
|
CSCC1
|
Cervical cancer cell line (HPV 16)
|
Gene expression data
|
| Sample_geo_accession | GSM183171
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183171/suppl/GSM183171.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183172 | GPL201 |
|
CC10A sample 1
|
CC10A
|
Cervical cancer cell line (HPV 45)
|
Gene expression data
|
| Sample_geo_accession | GSM183172
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183172/suppl/GSM183172.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183173 | GPL201 |
|
CC10A sample 2
|
CC10A
|
Cervical cancer cell line (HPV 45)
|
Gene expression data
|
| Sample_geo_accession | GSM183173
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183173/suppl/GSM183173.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183174 | GPL201 |
|
CC11- sample 1
|
CC11-
|
Cervical cancer cell line (HPV 67)
|
Gene expression data
|
| Sample_geo_accession | GSM183174
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183174/suppl/GSM183174.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183175 | GPL201 |
|
CC11- sample 2
|
CC11-
|
Cervical cancer cell line (HPV 67)
|
Gene expression data
|
| Sample_geo_accession | GSM183175
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183175/suppl/GSM183175.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183176 | GPL201 |
|
CC11+ sample 1
|
CC11+
|
Cervical cancer cell line (HPV 67)
|
Gene expression data
|
| Sample_geo_accession | GSM183176
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183176/suppl/GSM183176.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183177 | GPL201 |
|
CC11+ sample 2
|
CC11+
|
Cervical cancer cell line (HPV 67)
|
Gene expression data
|
| Sample_geo_accession | GSM183177
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183177/suppl/GSM183177.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183178 | GPL201 |
|
CSCC7 sample 1
|
CSCC7
|
Cervical cancer cell line (HPV 16)
|
Gene expression data
|
| Sample_geo_accession | GSM183178
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183178/suppl/GSM183178.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183179 | GPL201 |
|
CSCC7 sample 2
|
CSCC7
|
Cervical cancer cell line (HPV 16)
|
Gene expression data
|
| Sample_geo_accession | GSM183179
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183179/suppl/GSM183179.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183180 | GPL201 |
|
CC8 sample 1
|
CC8
|
Cervical cancer cell line (HPV 45)
|
Gene expression data
|
| Sample_geo_accession | GSM183180
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183180/suppl/GSM183180.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183181 | GPL201 |
|
CC8 sample 2
|
CC8
|
Cervical cancer cell line (HPV 45)
|
Gene expression data
|
| Sample_geo_accession | GSM183181
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183181/suppl/GSM183181.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183182 | GPL201 |
|
HeLa sample 1
|
HeLa
|
Cervical cancer cell line (HPV 18)
|
Gene expression data
|
| Sample_geo_accession | GSM183182
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183182/suppl/GSM183182.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183183 | GPL201 |
|
HeLa sample 2
|
HeLa
|
Cervical cancer cell line (HPV 18)
|
Gene expression data
|
| Sample_geo_accession | GSM183183
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183183/suppl/GSM183183.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183184 | GPL201 |
|
SiHa sample 1
|
SiHa
|
Cervical cancer cell line (HPV 16)
|
Gene expression data
|
| Sample_geo_accession | GSM183184
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183184/suppl/GSM183184.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
GSM183185 | GPL201 |
|
SiHa sample 2
|
SiHa
|
Cervical cancer cell line (HPV 16)
|
Gene expression data
|
| Sample_geo_accession | GSM183185
| | Sample_status | Public on Jul 31 2007
| | Sample_submission_date | Apr 19 2007
| | Sample_last_update_date | Jul 30 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cells were grown semiconfluent in RPMI 1640, supplemented with 10% FCS, streptomycin, and penicillin at 37ºC and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM183nnn/GSM183185/suppl/GSM183185.CEL.gz
| | Sample_series_id | GSE8605
| | Sample_data_row_count | 8793
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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