Search results for the GEO ID: GSE8642 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM214124 | GPL339 |
|
Mdr2-KO, 16 month old mouse 1
|
Mdr2-KO mouse, 16 month old mouse, liver non-tumorous tissue sample
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214124
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214124/suppl/GSM214124.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214125 | GPL339 |
|
Mdr2-KO, 16 month old mouse 2
|
Mdr2-KO mouse, 16 month old mouse, liver non-tumorous tissue sample
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214125
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214125/suppl/GSM214125.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214126 | GPL339 |
|
Mdr2-KO, 16 month old mouse 3
|
Mdr2-KO mouse, 16 month old mouse, liver non-tumorous tissue sample
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214126
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214126/suppl/GSM214126.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214127 | GPL339 |
|
Mdr2-KO, 16 month old mouse 4
|
Mdr2-KO mouse, 16 month old mouse, liver non-tumorous tissue sample
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214127
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214127/suppl/GSM214127.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214128 | GPL339 |
|
Mdr2-KO, 16 month old mouse 5
|
Mdr2-KO mouse, 16 month old mouse, liver non-tumorous tissue sample
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214128
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214128/suppl/GSM214128.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214129 | GPL339 |
|
Mdr2-KO, 16 month old mouse 6
|
Mdr2-KO mouse, 16 month old mouse, liver non-tumorous tissue sample
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214129
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214129/suppl/GSM214129.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214130 | GPL339 |
|
Mdr2-KO, 16 month old mouse 3 tumor
|
Mdr2-KO mouse, 16 month old mouse, liver tumor
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214130
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214130/suppl/GSM214130.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214131 | GPL339 |
|
Mdr2-KO, 16 month old mouse 4 tumor
|
Mdr2-KO mouse, 16 month old mouse, liver tumor
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214131
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214131/suppl/GSM214131.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214132 | GPL339 |
|
Mdr2-KO, 16 month old mouse 5 tumor 1
|
Mdr2-KO mouse, 16 month old mouse, liver tumor 1
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214132
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214132/suppl/GSM214132.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214133 | GPL339 |
|
Mdr2-KO, 16 month old mouse 5 tumor 2
|
Mdr2-KO mouse, 16 month old mouse, liver tumor 2
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214133
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214133/suppl/GSM214133.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214134 | GPL339 |
|
Mdr2-KO, 16 month old mouse 6 tumor 1
|
Mdr2-KO mouse, 16 month old mouse, liver tumor 1
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214134
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214134/suppl/GSM214134.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214135 | GPL339 |
|
Mdr2-KO, 16 month old mouse 6 tumor 2
|
Mdr2-KO mouse, 16 month old mouse, liver tumor 2
|
Genotype: Mdr2-KO homozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214135
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214135/suppl/GSM214135.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214136 | GPL339 |
|
Mdr2-KO heterozygote, 16 month old mouse 1
|
Mdr2-KO heterozygous mouse, 16 month old mouse, liver tissue sample
|
Genotype: Mdr2-KO heterozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214136
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214136/suppl/GSM214136.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214137 | GPL339 |
|
Mdr2-KO heterozygote, 16 month old mouse2
|
Mdr2-KO heterozygous mouse, 16 month old mouse, liver tissue sample
|
Genotype: Mdr2-KO heterozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214137
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214137/suppl/GSM214137.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
GSM214138 | GPL339 |
|
Mdr2-KO heterozygote, 16 month old mouse 3
|
Mdr2-KO heterozygous mouse, 16 month old mouse, liver tissue sample
|
Genotype: Mdr2-KO heterozygous mouse
Age: 16 month
|
According to paper: Molecular mechanisms of liver carcinogenesis in the Mdr2-knockout mice
|
Sample_geo_accession | GSM214138
| Sample_status | Public on Oct 10 2007
| Sample_submission_date | Jul 31 2007
| Sample_last_update_date | Aug 14 2011
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from frozen liver tissues with Trizol reagent (Invitrogen, Carlsbad, CA) as described by the manufacturer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The sample labeling was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_hyb_protocol | The sample hybridization was performed according the Affymetrix protocols: http://www.affymetrix.com/support/technical/manual/expression_manual.affx
| Sample_scan_protocol | The stained array was scanned on the Affymetrix scanner, the GCOS (Gene Operating System) generated the numerical data from the scanned intensities using the MAS 5 software (MicroArray suite 5.0; Affymetrix).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| Sample_platform_id | GPL339
| Sample_contact_name | Mark,,Katzenellenbogen
| Sample_contact_email | markbogen@gmail.com
| Sample_contact_phone | 972-3-5317119
| Sample_contact_fax | 972-3-7384097
| Sample_contact_department | THE FACULTY OF LIFE SCIENCE, BIOINFORMATICS AND MICROARRAY UNIT
| Sample_contact_institute | Bar Ilan University
| Sample_contact_address | Ramat-Gan 52900, Israel
| Sample_contact_city | Ramat-Gan
| Sample_contact_zip/postal_code | 52900
| Sample_contact_country | Israel
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM214nnn/GSM214138/suppl/GSM214138.CEL.gz
| Sample_series_id | GSE8642
| Sample_data_row_count | 22690
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|