Search results for the GEO ID: GSE8700  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM215572 | GPL1355 |
|
Diet Induced Obese rat C1
|
epididymal fat
|
Long Evans, 16-26 weeks, DIO (diet induced obese) group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215572
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215572/suppl/GSM215572.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215573 | GPL1355 |
|
Diet Induced Obese rat C2
|
epididymal fat
|
Long Evans, 16-26 weeks, DIO (diet induced obese) group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215573
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215573/suppl/GSM215573.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215574 | GPL1355 |
|
Diet Induced Obese rat C3
|
epididymal fat
|
Long Evans, 16-26 weeks, DIO (diet induced obese) group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215574
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215574/suppl/GSM215574.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215575 | GPL1355 |
|
Diet Induced Obese rat C5
|
epididymal fat
|
Long Evans, 16-26 weeks, DIO (diet induced obese) group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215575
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215575/suppl/GSM215575.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215576 | GPL1355 |
|
Diet Induced Obese rat C6
|
epididymal fat
|
Long Evans, 16-26 weeks, DIO (diet induced obese) group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215576
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215576/suppl/GSM215576.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215577 | GPL1355 |
|
Diet Induced Obese rat C7
|
epididymal fat
|
Long Evans, 16-26 weeks, DIO (diet induced obese) group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215577
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215577/suppl/GSM215577.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215578 | GPL1355 |
|
Diet Induced Obese rat C8
|
epididymal fat
|
Long Evans, 16-26 weeks, DIO (diet induced obese) group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215578
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215578/suppl/GSM215578.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215579 | GPL1355 |
|
control lean rat A1
|
epididymal fat
|
Long Evans, 16-26 weeks, control lean group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215579
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215579/suppl/GSM215579.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215580 | GPL1355 |
|
control lean rat A2
|
epididymal fat
|
Long Evans, 16-26 weeks, control lean group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215580
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215580/suppl/GSM215580.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215581 | GPL1355 |
|
control lean rat A3
|
epididymal fat
|
Long Evans, 16-26 weeks, control lean group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215581
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215581/suppl/GSM215581.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215582 | GPL1355 |
|
control lean rat A4
|
epididymal fat
|
Long Evans, 16-26 weeks, control lean group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215582
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215582/suppl/GSM215582.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215583 | GPL1355 |
|
control lean rat A5
|
epididymal fat
|
Long Evans, 16-26 weeks, control lean group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215583
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215583/suppl/GSM215583.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215584 | GPL1355 |
|
control lean rat A6
|
epididymal fat
|
Long Evans, 16-26 weeks, control lean group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215584
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215584/suppl/GSM215584.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215585 | GPL1355 |
|
control lean rat A7
|
epididymal fat
|
Long Evans, 16-26 weeks, control lean group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215585
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215585/suppl/GSM215585.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
|
GSM215586 | GPL1355 |
|
control lean rat A8
|
epididymal fat
|
Long Evans, 16-26 weeks, control lean group
|
Gene expression data from epididymal fat tissues.
|
| Sample_geo_accession | GSM215586
| | Sample_status | Public on Aug 07 2007
| | Sample_submission_date | Aug 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Epididymal fat tissues were isolated and placed on ice in the Trizol solution
| | Sample_growth_protocol_ch1 | Animals were maintained on a 12:12-hour light-dark photoperiod (light on 10:00 PM).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 microg of cRNA were hybridized on R230_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Dan,,Li
| | Sample_contact_email | li_shuyu_dan@lilly.com
| | Sample_contact_phone | 317-651-9923
| | Sample_contact_institute | Eli Lilly & Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM215nnn/GSM215586/suppl/GSM215586.CEL.gz
| | Sample_series_id | GSE8700
| | Sample_data_row_count | 31099
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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