Search results for the GEO ID: GSE8762  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM217766 | GPL570 |
|
lymphocytes_ctl_F_30y
|
lymphocytes (blood)
|
Sample Group: control; Gender: female; Age: 30; Tissue: lymphocytes (blood); IT15 CAG repeats: N/A
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217766
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217766/suppl/GSM217766.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217767 | GPL570 |
|
lymphocytes_ctl_F_39y
|
lymphocytes (blood)
|
Sample Group: control; Gender: female; Age: 39; Tissue: lymphocytes (blood); IT15 CAG repeats: N/A
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217767
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217767/suppl/GSM217767.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217768 | GPL570 |
|
lymphocytes_ctl_F_51y
|
lymphocytes (blood)
|
Sample Group: control; Gender: female; Age: 51; Tissue: lymphocytes (blood); IT15 CAG repeats: N/A
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217768
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217768/suppl/GSM217768.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217769 | GPL570 |
|
lymphocytes_ctl_F_60y
|
lymphocytes (blood)
|
Sample Group: control; Gender: female; Age: 60; Tissue: lymphocytes (blood); IT15 CAG repeats: N/A
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217769
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217769/suppl/GSM217769.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217770 | GPL570 |
|
lymphocytes_ctl_F_68y
|
lymphocytes (blood)
|
Sample Group: control; Gender: female; Age: 68; Tissue: lymphocytes (blood); IT15 CAG repeats: N/A
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217770
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217770/suppl/GSM217770.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217771 | GPL570 |
|
lymphocytes_ctl_M_38y
|
lymphocytes (blood)
|
Sample Group: control; Gender: male; Age: 38; Tissue: lymphocytes (blood); IT15 CAG repeats: N/A
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217771
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217771/suppl/GSM217771.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217772 | GPL570 |
|
lymphocytes_ctl_M_42y
|
lymphocytes (blood)
|
Sample Group: control; Gender: male; Age: 42; Tissue: lymphocytes (blood); IT15 CAG repeats: N/A
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217772
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217772/suppl/GSM217772.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217773 | GPL570 |
|
lymphocytes_ctl_M_46y
|
lymphocytes (blood)
|
Sample Group: control; Gender: male; Age: 46; Tissue: lymphocytes (blood); IT15 CAG repeats: N/A
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217773
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217773/suppl/GSM217773.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217774 | GPL570 |
|
lymphocytes_ctl_M_50y
|
lymphocytes (blood)
|
Sample Group: control; Gender: male; Age: 50; Tissue: lymphocytes (blood); IT15 CAG repeats: N/A
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217774
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217774/suppl/GSM217774.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217775 | GPL570 |
|
lymphocytes_ctl_M_60y
|
lymphocytes (blood)
|
Sample Group: control; Gender: male; Age: 60; Tissue: lymphocytes (blood); IT15 CAG repeats: N/A
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217775
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217775/suppl/GSM217775.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217776 | GPL570 |
|
lymphocytes_HD_F_36y
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: female; Age: 36; Tissue: lymphocytes (blood); IT15 CAG repeats: 18/51
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217776
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217776/suppl/GSM217776.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217777 | GPL570 |
|
lymphocytes_HD_F_41y
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: female; Age: 41; Tissue: lymphocytes (blood); IT15 CAG repeats: 24/49
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217777
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217777/suppl/GSM217777.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217778 | GPL570 |
|
lymphocytes_HD_F_43y_1
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: female; Age: 43; Tissue: lymphocytes (blood); IT15 CAG repeats: 26/47
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217778
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217778/suppl/GSM217778.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217779 | GPL570 |
|
lymphocytes_HD_F_43y_2
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: female; Age: 43; Tissue: lymphocytes (blood); IT15 CAG repeats: 15/50
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217779
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217779/suppl/GSM217779.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217780 | GPL570 |
|
lymphocytes_HD_F_44y
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: female; Age: 44; Tissue: lymphocytes (blood); IT15 CAG repeats: 17/48
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217780
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217780/suppl/GSM217780.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217781 | GPL570 |
|
lymphocytes_HD_F_50y
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: female; Age: 50; Tissue: lymphocytes (blood); IT15 CAG repeats: N/A
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217781
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217781/suppl/GSM217781.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217782 | GPL570 |
|
lymphocytes_HD_F_56y
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: female; Age: 56; Tissue: lymphocytes (blood); IT15 CAG repeats: 18/43
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217782
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217782/suppl/GSM217782.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217783 | GPL570 |
|
lymphocytes_HD_F_61y
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: female; Age: 61; Tissue: lymphocytes (blood); IT15 CAG repeats: 19/44
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217783
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217783/suppl/GSM217783.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217784 | GPL570 |
|
lymphocytes_HD_M_51y
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: male; Age: 51; Tissue: lymphocytes (blood); IT15 CAG repeats: 17/45
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217784
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217784/suppl/GSM217784.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217785 | GPL570 |
|
lymphocytes_HD_M_55y
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: male; Age: 55; Tissue: lymphocytes (blood); IT15 CAG repeats: 25/43
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217785
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217785/suppl/GSM217785.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217786 | GPL570 |
|
lymphocytes_HD_M_59y
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: male; Age: 59; Tissue: lymphocytes (blood); IT15 CAG repeats: 21/45
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217786
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217786/suppl/GSM217786.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
GSM217787 | GPL570 |
|
lymphocytes_HD_M_62y
|
lymphocytes (blood)
|
Sample Group: HD patient; Gender: male; Age: 62; Tissue: lymphocytes (blood); IT15 CAG repeats: 17/47
|
Affymetrix U133 Human Genome 2.0 Plus arrays
|
| Sample_geo_accession | GSM217787
| | Sample_status | Public on Aug 15 2007
| | Sample_submission_date | Aug 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol (Invitrogen) following the manufacturer's protocol, followed by RNeasy column cleanup and ethanol precipitation.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip® IVT Labeling Kit, according to manufacturer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_hyb_protocol | Affymetrix Eukaryotic Target Hybridization protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_scan_protocol | Affymetrix® GeneChip® Scanner 3000 with GCOS software according to manufactuer's protocol (GeneChip® Expression Analysis Technical Manual 701021 Rev. 5)
| | Sample_data_processing | Probe set summarization and normalization was performed by robust multi-array averaging (RMA, including background subtraction, summarization by median polish and quantile normalization) using the R/Bioconductor package affy.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,Kuhn
| | Sample_contact_email | kuhnam@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Neurogenetics
| | Sample_contact_department | NIA
| | Sample_contact_institute | NIH
| | Sample_contact_address | 35 Convent Dr
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-3707
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM217nnn/GSM217787/suppl/GSM217787.CEL.gz
| | Sample_series_id | GSE8762
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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