Search results for the GEO ID: GSE8823  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM219241 | GPL570 |
|
alveolar macrophages, non-smoker 001
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 41
Sex: M
Ancestry: African
Smoking status: non-smoker
|
NS-001_AM
|
| Sample_geo_accession | GSM219241
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219241/suppl/GSM219241.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219241/suppl/GSM219241.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219242 | GPL570 |
|
alveolar macrophages, non-smoker 002
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 61
Sex: M
Ancestry: European
Smoking status: non-smoker
|
NS-002_AM
|
| Sample_geo_accession | GSM219242
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219242/suppl/GSM219242.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219242/suppl/GSM219242.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219243 | GPL570 |
|
alveolar macrophages, non-smoker 003
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 37
Sex: F
Ancestry: African
Smoking status: non-smoker
|
NS-003_AM
|
| Sample_geo_accession | GSM219243
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219243/suppl/GSM219243.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219243/suppl/GSM219243.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219244 | GPL570 |
|
alveolar macrophages, non-smoker 005
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 35
Sex: M
Ancestry: African
Smoking status: non-smoker
|
NS-005_AM
|
| Sample_geo_accession | GSM219244
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219244/suppl/GSM219244.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219244/suppl/GSM219244.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219245 | GPL570 |
|
alveolar macrophages, non-smoker 006
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 47
Sex: M
Ancestry: African
Smoking status: non-smoker
|
NS-006_AM
|
| Sample_geo_accession | GSM219245
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219245/suppl/GSM219245.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219245/suppl/GSM219245.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219246 | GPL570 |
|
alveolar macrophages, non-smoker 008
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 36
Sex: M
Ancestry: European
Smoking status: non-smoker
|
NS-008_AM
|
| Sample_geo_accession | GSM219246
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219246/suppl/GSM219246.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219246/suppl/GSM219246.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219247 | GPL570 |
|
alveolar macrophages, non-smoker 013
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 45
Sex: M
Ancestry: Hispanic
Smoking status: non-smoker
|
NS-013_AM
|
| Sample_geo_accession | GSM219247
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219247/suppl/GSM219247.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219247/suppl/GSM219247.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_data_row_count | 54675
| | |
|
GSM219248 | GPL570 |
|
alveolar macrophages, non-smoker 014
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 45
Sex: M
Ancestry: European
Smoking status: non-smoker
|
NS-014_AM
|
| Sample_geo_accession | GSM219248
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219248/suppl/GSM219248.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219248/suppl/GSM219248.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219249 | GPL570 |
|
alveolar macrophages, non-smoker 019
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 49
Sex: F
Ancestry: European
Smoking status: non-smoker
|
NS-019_AM
|
| Sample_geo_accession | GSM219249
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219249/suppl/GSM219249.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219249/suppl/GSM219249.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219250 | GPL570 |
|
alveolar macrophages, non-smoker 021
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 38
Sex: M
Ancestry: Hispanic
Smoking status: non-smoker
|
NS-021_AM
|
| Sample_geo_accession | GSM219250
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219250/suppl/GSM219250.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219250/suppl/GSM219250.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219251 | GPL570 |
|
alveolar macrophages, non-smoker 035
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 45
Sex: M
Ancestry: European
Smoking status: non-smoker
|
NS-035_AM
|
| Sample_geo_accession | GSM219251
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219251/suppl/GSM219251.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219251/suppl/GSM219251.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219252 | GPL570 |
|
alveolar macrophages, smoker 001
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 37
Sex: F
Ancestry: African
Smoking status: smoker, 23 pack-years
|
S-001_AM
|
| Sample_geo_accession | GSM219252
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219252/suppl/GSM219252.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219252/suppl/GSM219252.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219253 | GPL570 |
|
alveolar macrophages, smoker 002
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 46
Sex: M
Ancestry: European
Smoking status: smoker, 21 pack-years
|
S-002_AM
|
| Sample_geo_accession | GSM219253
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219253/suppl/GSM219253.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219253/suppl/GSM219253.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_data_row_count | 54675
| | |
|
GSM219254 | GPL570 |
|
alveolar macrophages, smoker 023
|
alveolar macrophages obtained from bronchoalveolar lavage
|
age: 41
sex: M
ancestry: African
smoking status: smoker, 20 pack-years
|
S-023_AM
|
| Sample_geo_accession | GSM219254
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219254/suppl/GSM219254.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219254/suppl/GSM219254.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_data_row_count | 54675
| | |
|
GSM219255 | GPL570 |
|
alveolar macrophages, smoker 025
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 44
Sex: F
Ancestry: European
Smoking status: smoker, 30 pack-years
|
S-025_AM
|
| Sample_geo_accession | GSM219255
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219255/suppl/GSM219255.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219255/suppl/GSM219255.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_data_row_count | 54675
| | |
|
GSM219256 | GPL570 |
|
alveolar macrophages, smoker 027
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 44
Sex: M
Ancestry: European
Smoking status: smoker, 45 pack-years
|
S-027_AM
|
| Sample_geo_accession | GSM219256
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219256/suppl/GSM219256.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219256/suppl/GSM219256.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219257 | GPL570 |
|
alveolar macrophages, smoker 033
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 48
Sex: M
Ancestry: European
Smoking status: smoker, 15 pack-years
|
S-033_AM
|
| Sample_geo_accession | GSM219257
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219257/suppl/GSM219257.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219257/suppl/GSM219257.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219258 | GPL570 |
|
alveolar macrophages, smoker 040
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 40
Sex: M
Ancestry: African
Smoking status: smoker, 24 pack-years
|
S-040_AM
|
| Sample_geo_accession | GSM219258
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219258/suppl/GSM219258.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219258/suppl/GSM219258.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219259 | GPL570 |
|
alveolar macrophages, smoker 041
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 48
Sex: M
Ancestry: European
Smoking status: smoker, 20 pack-years
|
S-041_AM
|
| Sample_geo_accession | GSM219259
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219259/suppl/GSM219259.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219259/suppl/GSM219259.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219260 | GPL570 |
|
alveolar macrophages, smoker 044
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 50
Sex: M
Ancestry: European
Smoking status: smoker, 38 pack-years
|
S-044_AM
|
| Sample_geo_accession | GSM219260
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219260/suppl/GSM219260.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219260/suppl/GSM219260.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219261 | GPL570 |
|
alveolar macrophages, smoker 057
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 45
Sex: M
Ancestry: African
Smoking status: smoker, 24 pack-years
|
S-057_AM
|
| Sample_geo_accession | GSM219261
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219261/suppl/GSM219261.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219261/suppl/GSM219261.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219262 | GPL570 |
|
alveolar macrophages, smoker 058
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 56
Sex: M
Ancestry: African
Smoking status: smoker, 80 pack-years
|
S-058_AM
|
| Sample_geo_accession | GSM219262
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219262/suppl/GSM219262.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219262/suppl/GSM219262.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219263 | GPL570 |
|
alveolar macrophages, smoker 063
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 59
Sex: M
Ancestry: European
Smoking status: smoker, 60 pack-years
|
S-063_AM
|
| Sample_geo_accession | GSM219263
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219263/suppl/GSM219263.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219263/suppl/GSM219263.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM219264 | GPL570 |
|
alveolar macrophages, smoker 069
|
alveolar macrophages obtained from bronchoalveolar lavage
|
Age: 45
Sex: M
Ancestry: African
Smoking status: smoker, 70 pack-years
|
S-069_AM
|
| Sample_geo_accession | GSM219264
| | Sample_status | Public on Aug 01 2008
| | Sample_submission_date | Aug 20 2007
| | Sample_last_update_date | May 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219264/suppl/GSM219264.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM219nnn/GSM219264/suppl/GSM219264.CHP.gz
| | Sample_series_id | GSE8823
| | Sample_series_id | GSE13896
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
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