Search results for the GEO ID: GSE8880  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM225003 | GPL1355 |
|
control, rep1
|
Rat Liver without treatment
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were not treated with chemicals
|
| Sample_geo_accession | GSM225003
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, 4% mash diet (control)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225003/suppl/GSM225003.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225004 | GPL1355 |
|
control, rep2
|
Rat Liver without treatment
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were not treated with chemicals
|
| Sample_geo_accession | GSM225004
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, 4% mash diet (control)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225004/suppl/GSM225004.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225005 | GPL1355 |
|
control, rep3
|
Rat Liver without treatment
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were not treated with chemicals
|
| Sample_geo_accession | GSM225005
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, 4% mash diet (control)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225005/suppl/GSM225005.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225006 | GPL1355 |
|
control - rep4
|
Rat Liver without treatment
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were not treated with chemicals
|
| Sample_geo_accession | GSM225006
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, 4% mash diet (control)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225006/suppl/GSM225006.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225007 | GPL1355 |
|
control, rep5
|
Rat Liver without treatment
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were not treated with chemicals
|
| Sample_geo_accession | GSM225007
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, 4% mash diet (control)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225007/suppl/GSM225007.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225008 | GPL1355 |
|
bnf, rep1
|
Rat Liver treated with BNF
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with BNF
|
| Sample_geo_accession | GSM225008
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 5,6-benzoflavone BNF (1650mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225008/suppl/GSM225008.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225009 | GPL1355 |
|
bnf, rep2
|
Rat Liver treated with BNF
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with BNF
|
| Sample_geo_accession | GSM225009
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 5,6-benzoflavone BNF (1650mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225009/suppl/GSM225009.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225010 | GPL1355 |
|
bnf, rep3
|
Rat Liver treated with BNF
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with BNF
|
| Sample_geo_accession | GSM225010
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 5,6-benzoflavone BNF (1650mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225010/suppl/GSM225010.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225011 | GPL1355 |
|
bnf, rep4
|
Rat Liver treated with BNF
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with BNF
|
| Sample_geo_accession | GSM225011
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 5,6-benzoflavone BNF (1650mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225011/suppl/GSM225011.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225012 | GPL1355 |
|
bnf, rep5
|
Rat Liver treated with BNF
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with BNF
|
| Sample_geo_accession | GSM225012
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 5,6-benzoflavone BNF (1650mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225012/suppl/GSM225012.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225013 | GPL1355 |
|
d3t, rep1
|
Rat Liver treated with D3T
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with D3T
|
| Sample_geo_accession | GSM225013
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 3H-1,2-dithiole-3-thione (D3T 600mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225013/suppl/GSM225013.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225014 | GPL1355 |
|
d3t, rep2
|
Rat Liver treated with D3T
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with D3T
|
| Sample_geo_accession | GSM225014
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 3H-1,2-dithiole-3-thione (D3T 600mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225014/suppl/GSM225014.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225015 | GPL1355 |
|
d3t, rep3
|
Rat Liver treated with D3T
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with D3T
|
| Sample_geo_accession | GSM225015
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 3H-1,2-dithiole-3-thione (D3T 600mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225015/suppl/GSM225015.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225016 | GPL1355 |
|
d3t, rep4
|
Rat Liver treated with D3T
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with D3T
|
| Sample_geo_accession | GSM225016
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 3H-1,2-dithiole-3-thione (D3T 600mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225016/suppl/GSM225016.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225017 | GPL1355 |
|
d3t, rep5
|
Rat Liver treated with D3T
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with D3T
|
| Sample_geo_accession | GSM225017
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 3H-1,2-dithiole-3-thione (D3T 600mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225017/suppl/GSM225017.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225018 | GPL1355 |
|
olt, rep1
|
Rat Liver treated with OLT
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with OLT
|
| Sample_geo_accession | GSM225018
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 4-methyl-5-pyrazinyl-3H-1,2-dithiole-3-thione (OLT 500mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225018/suppl/GSM225018.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225019 | GPL1355 |
|
olt, rep2
|
Rat Liver treated with OLT
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with OLT
|
| Sample_geo_accession | GSM225019
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 4-methyl-5-pyrazinyl-3H-1,2-dithiole-3-thione (OLT 500mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225019/suppl/GSM225019.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225020 | GPL1355 |
|
olt, rep3
|
Rat Liver treated with OLT
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with OLT
|
| Sample_geo_accession | GSM225020
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 4-methyl-5-pyrazinyl-3H-1,2-dithiole-3-thione (OLT 500mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225020/suppl/GSM225020.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225021 | GPL1355 |
|
olt, rep4
|
Rat Liver treated with OLT
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with OLT
|
| Sample_geo_accession | GSM225021
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 4-methyl-5-pyrazinyl-3H-1,2-dithiole-3-thione (OLT 500mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225021/suppl/GSM225021.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
GSM225022 | GPL1355 |
|
olt, rep5
|
Rat Liver treated with OLT
|
Female Sprague Dawley rats
|
Gene expression data from livers of rats that were treated with OLT
|
| Sample_geo_accession | GSM225022
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad Rodent diet, containing 4-methyl-5-pyrazinyl-3H-1,2-dithiole-3-thione (OLT 500mg/kg diet)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225022/suppl/GSM225022.CEL.gz
| | Sample_series_id | GSE8880
| | Sample_data_row_count | 31042
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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