Search results for the GEO ID: GSE8882  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM225023 | GPL85 |
|
rat liver without treatment, rep1
|
rat liver without treatment
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were not treated with chemicals
|
| Sample_geo_accession | GSM225023
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of saturated sucrose (control) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225023/suppl/GSM225023.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225024 | GPL85 |
|
rat liver without treatment, rep2
|
rat liver without treatment
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were not treated with chemicals
|
| Sample_geo_accession | GSM225024
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of saturated sucrose (control) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225024/suppl/GSM225024.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225025 | GPL85 |
|
rat liver without treatment, rep3
|
rat liver without treatment
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were not treated with chemicals
|
| Sample_geo_accession | GSM225025
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of saturated sucrose (control) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225025/suppl/GSM225025.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225026 | GPL85 |
|
rat liver without treatment, rep4
|
rat liver without treatment
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were not treated with chemicals
|
| Sample_geo_accession | GSM225026
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of saturated sucrose (control) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225026/suppl/GSM225026.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225027 | GPL85 |
|
rat liver treated with D3T, rep1
|
rat liver treated with D3T
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were treated with D3T
|
| Sample_geo_accession | GSM225027
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 3H-1,2-dithiole-3-thione (D3T) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225027/suppl/GSM225027.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225028 | GPL85 |
|
rat liver treated with D3T, rep2
|
rat liver treated with D3T
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were treated with D3T
|
| Sample_geo_accession | GSM225028
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 3H-1,2-dithiole-3-thione (D3T) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225028/suppl/GSM225028.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225029 | GPL85 |
|
rat liver treated with D3T, rep3
|
rat liver treated with D3T
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were treated with D3T
|
| Sample_geo_accession | GSM225029
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 3H-1,2-dithiole-3-thione (D3T) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225029/suppl/GSM225029.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225030 | GPL85 |
|
rat liver treated with D3T, rep4
|
rat liver treated with D3T
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were treated with D3T
|
| Sample_geo_accession | GSM225030
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 3H-1,2-dithiole-3-thione (D3T) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225030/suppl/GSM225030.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225031 | GPL85 |
|
rat liver treated with OLT, rep1
|
rat liver treated with OLT
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were treated with OLT
|
| Sample_geo_accession | GSM225031
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 4-methyl-5-pyrazinyl-3H-1,2-dithiole-3-thione (OLT) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225031/suppl/GSM225031.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225032 | GPL85 |
|
rat liver treated with OLT, rep2
|
rat liver treated with OLT
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were treated with OLT
|
| Sample_geo_accession | GSM225032
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 4-methyl-5-pyrazinyl-3H-1,2-dithiole-3-thione (OLT) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225032/suppl/GSM225032.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225033 | GPL85 |
|
rat liver treated with OLT, rep3
|
rat liver treated with OLT
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were treated with OLT
|
| Sample_geo_accession | GSM225033
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 4-methyl-5-pyrazinyl-3H-1,2-dithiole-3-thione (OLT) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225033/suppl/GSM225033.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225034 | GPL85 |
|
rat liver treated with OLT, rep4
|
rat liver treated with OLT
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were treated with OLT
|
| Sample_geo_accession | GSM225034
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 4-methyl-5-pyrazinyl-3H-1,2-dithiole-3-thione (OLT) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225034/suppl/GSM225034.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
| | |
|
GSM225035 | GPL85 |
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rat liver treated with TBD, rep1
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rat liver treated with TBD
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Male Fischer F344 rats (80-100g)
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Gene expression data from livers of rats that were treated with TBD
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| Sample_geo_accession | GSM225035
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 5-tert-butyl-3H-1,2-dithiole-3-thione (TBD) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225035/suppl/GSM225035.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
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GSM225036 | GPL85 |
|
rat liver treated with TBD, rep2
|
rat liver treated with TBD
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were treated with TBD
|
| Sample_geo_accession | GSM225036
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 5-tert-butyl-3H-1,2-dithiole-3-thione (TBD) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225036/suppl/GSM225036.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
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GSM225037 | GPL85 |
|
rat liver treated with TBD, rep3
|
rat liver treated with TBD
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were treated with TBD
|
| Sample_geo_accession | GSM225037
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 5-tert-butyl-3H-1,2-dithiole-3-thione (TBD) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225037/suppl/GSM225037.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
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|
GSM225038 | GPL85 |
|
rat liver treated with TBD, rep4
|
rat liver treated with TBD
|
Male Fischer F344 rats (80-100g)
|
Gene expression data from livers of rats that were treated with TBD
|
| Sample_geo_accession | GSM225038
| | Sample_status | Public on Dec 30 2008
| | Sample_submission_date | Aug 27 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Rats were fed with Harlan Teklad diet treated with 100?l of 5-tert-butyl-3H-1,2-dithiole-3-thione (TBD) once every other day for 5 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Stat-60 extraction
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Enzo labeling kit
| | Sample_hyb_protocol | Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome U34 Array Set RG-U34A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
| | Sample_data_processing | The data were analyzed with Bioconductor using GC-RMA analysis.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Thomas,R,Sutter
| | Sample_contact_email | tsutter@memphis.edu
| | Sample_contact_phone | 901-678-8391
| | Sample_contact_laboratory | Feinstone Research Lab
| | Sample_contact_department | Biology
| | Sample_contact_institute | University of Memphis
| | Sample_contact_address | 3774 Walker Ave.
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38152
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM225nnn/GSM225038/suppl/GSM225038.CEL.gz
| | Sample_series_id | GSE8882
| | Sample_data_row_count | 8740
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