Search results for the GEO ID: GSE8977  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM227514 | GPL570 |
|
Stroma normal breast (NS1)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227514
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227514/suppl/GSM227514.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227514/suppl/GSM227514.dcp.gz
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227515 | GPL570 |
|
Stroma normal breast (NS10)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227515
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227515/suppl/GSM227515.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227515/suppl/GSM227515.dcp.gz
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227516 | GPL570 |
|
Stroma normal breast (NS2)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227516
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227516/suppl/GSM227516.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227516/suppl/GSM227516.dcp.gz
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227517 | GPL570 |
|
Stroma normal breast (NS3)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227517
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227517/suppl/GSM227517.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227517/suppl/GSM227517.dcp.gz
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227518 | GPL570 |
|
Stroma normal breast (NS4)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227518
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227518/suppl/GSM227518.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227518/suppl/GSM227518.dcp.gz
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227519 | GPL570 |
|
Stroma normal breast (NS5)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227519
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227519/suppl/GSM227519.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227519/suppl/GSM227519.dcp.gz
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227520 | GPL570 |
|
Stroma normal breast (NS6)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227520
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227520/suppl/GSM227520.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227520/suppl/GSM227520.dcp.gz
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227521 | GPL570 |
|
Stroma normal breast (NS7)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227521
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227521/suppl/GSM227521.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227521/suppl/GSM227521.dcp.gz
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227522 | GPL570 |
|
Stroma normal breast (NS768)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227522
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227522/suppl/GSM227522.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227522/suppl/GSM227522.dcp.gz
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227523 | GPL570 |
|
Stroma normal breast (NS8)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227523
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227523/suppl/GSM227523.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227523/suppl/GSM227523.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227524 | GPL570 |
|
Stroma normal breast (NS817)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227524
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227524/suppl/GSM227524.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227524/suppl/GSM227524.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227525 | GPL570 |
|
Stroma normal breast (NS9)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227525
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227525/suppl/GSM227525.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227525/suppl/GSM227525.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227526 | GPL570 |
|
Stroma normal breast (Nstr101904)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227526
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227526/suppl/GSM227526.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227526/suppl/GSM227526.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227527 | GPL570 |
|
Stroma normal breast (Nstr112204)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227527
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227527/suppl/GSM227527.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227527/suppl/GSM227527.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227528 | GPL570 |
|
Stroma normal breast (Nstr122204)
|
stroma
|
normal
|
expression of breast tissue
|
| Sample_geo_accession | GSM227528
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227528/suppl/GSM227528.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227528/suppl/GSM227528.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227529 | GPL570 |
|
Stroma tumor (TS718)
|
stroma
|
tumor
|
expression of breast tissue
|
| Sample_geo_accession | GSM227529
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227529/suppl/GSM227529.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227529/suppl/GSM227529.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227530 | GPL570 |
|
Stroma tumor (TS795)
|
stroma
|
tumor
|
expression of breast tissue
|
| Sample_geo_accession | GSM227530
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227530/suppl/GSM227530.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227530/suppl/GSM227530.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227531 | GPL570 |
|
Stroma tumor (TS816)
|
stroma
|
tumor
|
expression of breast tissue
|
| Sample_geo_accession | GSM227531
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227531/suppl/GSM227531.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227531/suppl/GSM227531.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227532 | GPL570 |
|
Stroma tumor (TS817)
|
stroma
|
tumor
|
expression of breast tissue
|
| Sample_geo_accession | GSM227532
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227532/suppl/GSM227532.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227532/suppl/GSM227532.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227533 | GPL570 |
|
Stroma tumor (TS818)
|
stroma
|
tumor
|
expression of breast tissue
|
| Sample_geo_accession | GSM227533
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227533/suppl/GSM227533.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227533/suppl/GSM227533.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
| | |
|
GSM227534 | GPL570 |
|
Stroma tumor (TS820)
|
stroma
|
tumor
|
expression of breast tissue
|
| Sample_geo_accession | GSM227534
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227534/suppl/GSM227534.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227534/suppl/GSM227534.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
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GSM227535 | GPL570 |
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Stroma tumor (TS838)
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stroma
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tumor
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expression of breast tissue
|
| Sample_geo_accession | GSM227535
| | Sample_status | Public on Oct 05 2007
| | Sample_submission_date | Sep 06 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_growth_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA extraction, cRNA sythesis and Hyb performed according to J. Clin. Invest. 110(2002), pp. 633-641 and Cancer Res. 64(2004), pp. 64-71
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotynylated cRNA were prepared according to the standard affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45c on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the affymetrix fludics station 400
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanncer G2500A
| | Sample_data_processing | dCHIP with default settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Richardson
| | Sample_contact_email | arichardson@partners.org
| | Sample_contact_phone | 617-732-4764
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Brigham and Women's Hospital
| | Sample_contact_address | 75 Francis Street
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227535/suppl/GSM227535.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM227nnn/GSM227535/suppl/GSM227535.dcp.gz
| | Sample_relation | Reanalyzed by: GSE20125
| | Sample_series_id | GSE8977
| | Sample_data_row_count | 54675
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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