Search results for the GEO ID: GSE9031  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM229038 | GPL570 |
|
OciLy7 - mAdbID:66126
|
OciLy7
|
Cell type: GCB-DLBCL
|
mAdb experiment ID: 66126
|
| Sample_geo_accession | GSM229038
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229038/suppl/GSM229038.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229039 | GPL570 |
|
OciLy19 - mAdbID:66127
|
OciLy19
|
Cell type: GCB-DLBCL
|
mAdb experiment ID: 66127
|
| Sample_geo_accession | GSM229039
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229039/suppl/GSM229039.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229040 | GPL570 |
|
LB84-1 - mAdbID:68988
|
LB84-1
|
Cell type: Myeloma
|
mAdb experiment ID: 68988
|
| Sample_geo_accession | GSM229040
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229040/suppl/GSM229040.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229041 | GPL570 |
|
H1112 - mAdbID:68990
|
H1112
|
Cell type: Myeloma
|
mAdb experiment ID: 68990
|
| Sample_geo_accession | GSM229041
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229041/suppl/GSM229041.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229042 | GPL570 |
|
KMS11 - mAdbID:68991
|
KMS11
|
Cell type: Myeloma
|
mAdb experiment ID: 68991
|
| Sample_geo_accession | GSM229042
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229042/suppl/GSM229042.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229043 | GPL570 |
|
KMS12 - mAdbID:68992
|
KMS12
|
Cell type: Myeloma
|
mAdb experiment ID: 68992
|
| Sample_geo_accession | GSM229043
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229043/suppl/GSM229043.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229044 | GPL570 |
|
JIM3 - mAdbID:68994
|
Jim3
|
Cell type: Myeloma
|
mAdb experiment ID: 68994
|
| Sample_geo_accession | GSM229044
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229044/suppl/GSM229044.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229045 | GPL570 |
|
DB - mAdbID:69800
|
DB
|
Cell type: GCB-DLBCL
|
mAdb experiment ID: 69800
|
| Sample_geo_accession | GSM229045
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229045/suppl/GSM229045.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229046 | GPL570 |
|
BJAB - mAdbID:69818
|
BJAB
|
Cell type: GCB-DLBCL
|
mAdb experiment ID: 69818
|
| Sample_geo_accession | GSM229046
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229046/suppl/GSM229046.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229047 | GPL570 |
|
Mino - mAdbID:76647
|
Mino
|
Cell type: MCL
|
mAdb experiment ID: 76647
|
| Sample_geo_accession | GSM229047
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229047/suppl/GSM229047.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229048 | GPL570 |
|
Z138 - mAdbID:76648
|
Z138
|
Cell type: MCL
|
mAdb experiment ID: 76648
|
| Sample_geo_accession | GSM229048
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229048/suppl/GSM229048.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229049 | GPL570 |
|
UPN1 - mAdbID:76649
|
UPN1
|
Cell type: MCL
|
mAdb experiment ID: 76649
|
| Sample_geo_accession | GSM229049
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229049/suppl/GSM229049.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229050 | GPL570 |
|
Jeko - mAdbID:76650
|
Jeko
|
Cell type: MCL
|
mAdb experiment ID: 76650
|
| Sample_geo_accession | GSM229050
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229050/suppl/GSM229050.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229051 | GPL570 |
|
JJN3 - mAdbID:79766
|
JJN3
|
Cell type: Myeloma
|
mAdb experiment ID: 79766
|
| Sample_geo_accession | GSM229051
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229051/suppl/GSM229051.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
|
GSM229052 | GPL570 |
|
LP1 - mAdbID:79769
|
LP1
|
Cell type: Myeloma
|
mAdb experiment ID: 79769
|
| Sample_geo_accession | GSM229052
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Sep 13 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol Total RNA
| | Sample_extract_protocol_ch1 | Extraction method: trizol
| | Sample_extract_protocol_ch1 | Other: Total RNA was extracted using Trizol according to manufacturer's instructions (Invitrogen, Carlsbad, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix Labeling Protocol
| | Sample_label_protocol_ch1 | Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg mRNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Affymetrix Hybridization Protocol
| | Sample_hyb_protocol | Other: Following fragmentation, 20 micrograms of cRNA were hybridized for 16 hours at 45C on LymphDX Custom Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Affy Scanning Protocol
| | Sample_scan_protocol | Other: Scanning was performed by the Affymetrix 3000 Scanner.
| | Sample_data_processing | MAS 5.0 Data Processing Protocol
| | Sample_data_processing | Calculation Method: The data were analyzed with Microarray Suite version 5.0 (MA S 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Louis,M.,Staudt
| | Sample_contact_email | lstaudt@mail.nih.gov
| | Sample_contact_phone | 301-402-1892
| | Sample_contact_fax | 301-496-9956
| | Sample_contact_laboratory | Louis M Staudt
| | Sample_contact_department | Metabolism Branch
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 9000 Rockville Pike, Bldg 10, Rm 4N114
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM229nnn/GSM229052/suppl/GSM229052.CEL.gz
| | Sample_series_id | GSE9031
| | Sample_data_row_count | 54675
| | |
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