Search results for the GEO ID: GSE9090  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM230280 | GPL570 |
|
H1 embryonic stem cells - GFP (stromal cell study)
|
H1 undifferentiated embryonic stem cells - GFP
|
derived from H1-GFP labeled
|
H1-ES
|
| Sample_geo_accession | GSM230280
| | Sample_status | Public on Nov 01 2007
| | Sample_submission_date | Sep 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_growth_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNAeasy kiit and was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr.
| | Sample_scan_protocol | Once the probe array has been hybridized, washed, and stained, it is scanned.
| | Sample_data_processing | The data were analyzed with Robust Multi-Chip Analysis (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,A,Hipp
| | Sample_contact_email | jenhipp@wfubmc.edu
| | Sample_contact_laboratory | Atala
| | Sample_contact_department | Institute for Regenerative Medicine
| | Sample_contact_institute | Wake Forest School of Medicine
| | Sample_contact_address | Medical Center Blvd
| | Sample_contact_city | Winston-Salem
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27157
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230280/suppl/GSM230280_H1.CEL.gz
| | Sample_relation | Reanalysis of: GSM225042
| | Sample_series_id | GSE9090
| | Sample_series_id | GSE9196
| | Sample_data_row_count | 54675
| | |
|
GSM230281 | GPL570 |
|
H1 embryoid bodies - GFP (stromal cell study)
|
H1 day3.5 embryoid bodies - GFP
|
derived from H1-GFP labeled
|
H1-EB
|
| Sample_geo_accession | GSM230281
| | Sample_status | Public on Nov 01 2007
| | Sample_submission_date | Sep 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_growth_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNAeasy kiit and was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr.
| | Sample_scan_protocol | Once the probe array has been hybridized, washed, and stained, it is scanned.
| | Sample_data_processing | The data were analyzed with Robust Multi-Chip Analysis (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,A,Hipp
| | Sample_contact_email | jenhipp@wfubmc.edu
| | Sample_contact_laboratory | Atala
| | Sample_contact_department | Institute for Regenerative Medicine
| | Sample_contact_institute | Wake Forest School of Medicine
| | Sample_contact_address | Medical Center Blvd
| | Sample_contact_city | Winston-Salem
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27157
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230281/suppl/GSM230281_EB.CEL.gz
| | Sample_relation | Reanalysis of: GSM225043
| | Sample_series_id | GSE9090
| | Sample_series_id | GSE9196
| | Sample_data_row_count | 54675
| | |
|
GSM230282 | GPL570 |
|
H1 blast cells - GFP (stromal study)
|
H1 blast cells - GFP
|
derived from H1-GFP labeled
|
H1-BL
|
| Sample_geo_accession | GSM230282
| | Sample_status | Public on Nov 01 2007
| | Sample_submission_date | Sep 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_growth_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNAeasy kiit and was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr.
| | Sample_scan_protocol | Once the probe array has been hybridized, washed, and stained, it is scanned.
| | Sample_data_processing | The data were analyzed with Robust Multi-Chip Analysis (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,A,Hipp
| | Sample_contact_email | jenhipp@wfubmc.edu
| | Sample_contact_laboratory | Atala
| | Sample_contact_department | Institute for Regenerative Medicine
| | Sample_contact_institute | Wake Forest School of Medicine
| | Sample_contact_address | Medical Center Blvd
| | Sample_contact_city | Winston-Salem
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27157
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230282/suppl/GSM230282_BL.CEL.gz
| | Sample_relation | Reanalysis of: GSM225044
| | Sample_series_id | GSE9090
| | Sample_series_id | GSE9196
| | Sample_data_row_count | 54675
| | |
|
GSM230283 | GPL570 |
|
H9 embryonic stem cells (stromal cell study)
|
H9 undifferentiated embryonic stem cells
|
derived from H9
|
H9-ES
|
| Sample_geo_accession | GSM230283
| | Sample_status | Public on Nov 01 2007
| | Sample_submission_date | Sep 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_growth_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNAeasy kiit and was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr.
| | Sample_scan_protocol | Once the probe array has been hybridized, washed, and stained, it is scanned.
| | Sample_data_processing | The data were analyzed with Robust Multi-Chip Analysis (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,A,Hipp
| | Sample_contact_email | jenhipp@wfubmc.edu
| | Sample_contact_laboratory | Atala
| | Sample_contact_department | Institute for Regenerative Medicine
| | Sample_contact_institute | Wake Forest School of Medicine
| | Sample_contact_address | Medical Center Blvd
| | Sample_contact_city | Winston-Salem
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27157
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230283/suppl/GSM230283_H9-ES.CEL.gz
| | Sample_relation | Reanalysis of: GSM225045
| | Sample_series_id | GSE9090
| | Sample_series_id | GSE9196
| | Sample_data_row_count | 54675
| | |
|
GSM230284 | GPL570 |
|
H9 embryoid bodies (stromal cell study)
|
H9 day3.5 embryoid bodies
|
derived from H10
|
H9-EB
|
| Sample_geo_accession | GSM230284
| | Sample_status | Public on Nov 01 2007
| | Sample_submission_date | Sep 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_growth_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNAeasy kiit and was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr.
| | Sample_scan_protocol | Once the probe array has been hybridized, washed, and stained, it is scanned.
| | Sample_data_processing | The data were analyzed with Robust Multi-Chip Analysis (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,A,Hipp
| | Sample_contact_email | jenhipp@wfubmc.edu
| | Sample_contact_laboratory | Atala
| | Sample_contact_department | Institute for Regenerative Medicine
| | Sample_contact_institute | Wake Forest School of Medicine
| | Sample_contact_address | Medical Center Blvd
| | Sample_contact_city | Winston-Salem
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27157
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230284/suppl/GSM230284_H9-EBS.CEL.gz
| | Sample_relation | Reanalysis of: GSM225046
| | Sample_series_id | GSE9090
| | Sample_series_id | GSE9196
| | Sample_data_row_count | 54675
| | |
|
GSM230285 | GPL570 |
|
H9 blast cells (stromal cell study)
|
H9 blast cells
|
derived from H11
|
H9-BL
|
| Sample_geo_accession | GSM230285
| | Sample_status | Public on Nov 01 2007
| | Sample_submission_date | Sep 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_growth_protocol_ch1 | see supplementary information Lu et.al, Nature Methods, 2007 Jun;4(6):501-9.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNAeasy kiit and was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr.
| | Sample_scan_protocol | Once the probe array has been hybridized, washed, and stained, it is scanned.
| | Sample_data_processing | The data were analyzed with Robust Multi-Chip Analysis (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,A,Hipp
| | Sample_contact_email | jenhipp@wfubmc.edu
| | Sample_contact_laboratory | Atala
| | Sample_contact_department | Institute for Regenerative Medicine
| | Sample_contact_institute | Wake Forest School of Medicine
| | Sample_contact_address | Medical Center Blvd
| | Sample_contact_city | Winston-Salem
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27157
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230285/suppl/GSM230285_H9-BL.CEL.gz
| | Sample_relation | Reanalysis of: GSM225047
| | Sample_series_id | GSE9090
| | Sample_series_id | GSE9196
| | Sample_data_row_count | 54675
| | |
|
GSM230286 | GPL570 |
|
CD49a+ rep1 (stromal cell study)
|
normal prostate
|
CD49a+ MACS sorted cells
|
Prostate stromal fibromuscular cells
|
| Sample_geo_accession | GSM230286
| | Sample_status | Public on Nov 01 2007
| | Sample_submission_date | Sep 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 200 ng of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA of .cel files with Genespring 7.2
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,A,Hipp
| | Sample_contact_email | jenhipp@wfubmc.edu
| | Sample_contact_laboratory | Atala
| | Sample_contact_department | Institute for Regenerative Medicine
| | Sample_contact_institute | Wake Forest School of Medicine
| | Sample_contact_address | Medical Center Blvd
| | Sample_contact_city | Winston-Salem
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27157
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230286/suppl/GSM230286_CD49a_01-26-04.CEL.gz
| | Sample_relation | Reanalysis of: GSM91308
| | Sample_series_id | GSE9090
| | Sample_series_id | GSE9196
| | Sample_data_row_count | 54675
| | |
|
GSM230287 | GPL570 |
|
CD49a+ rep2 (stromal cell study)
|
normal prostate
|
CD49a+ MACS sorted cells
|
Prostate stromal fibromuscular cells
|
| Sample_geo_accession | GSM230287
| | Sample_status | Public on Nov 01 2007
| | Sample_submission_date | Sep 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 200 ng of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA of .cel files with Genespring 7.2
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,A,Hipp
| | Sample_contact_email | jenhipp@wfubmc.edu
| | Sample_contact_laboratory | Atala
| | Sample_contact_department | Institute for Regenerative Medicine
| | Sample_contact_institute | Wake Forest School of Medicine
| | Sample_contact_address | Medical Center Blvd
| | Sample_contact_city | Winston-Salem
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27157
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230287/suppl/GSM230287_CD49a_03-23-04.CEL.gz
| | Sample_relation | Reanalysis of: GSM91309
| | Sample_series_id | GSE9090
| | Sample_series_id | GSE9196
| | Sample_data_row_count | 54675
| | |
|
GSM230288 | GPL570 |
|
CD49a+ rep3 (stromal cell study)
|
normal prostate
|
CD49a+ MACS sorted cells
|
Prostate stromal fibromuscular cells
|
| Sample_geo_accession | GSM230288
| | Sample_status | Public on Nov 01 2007
| | Sample_submission_date | Sep 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 200 ng of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA of .cel files with Genespring 7.2
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,A,Hipp
| | Sample_contact_email | jenhipp@wfubmc.edu
| | Sample_contact_laboratory | Atala
| | Sample_contact_department | Institute for Regenerative Medicine
| | Sample_contact_institute | Wake Forest School of Medicine
| | Sample_contact_address | Medical Center Blvd
| | Sample_contact_city | Winston-Salem
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27157
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230288/suppl/GSM230288_CD49a_03-04-04.CEL.gz
| | Sample_relation | Reanalysis of: GSM91310
| | Sample_series_id | GSE9090
| | Sample_series_id | GSE9196
| | Sample_data_row_count | 54675
| | |
|
GSM230289 | GPL570 |
|
CD49a+ rep4 (stromal cell study)
|
normal prostate
|
CD49a+ MACS sorted cells
|
Prostate stromal fibromuscular cells
|
| Sample_geo_accession | GSM230289
| | Sample_status | Public on Nov 01 2007
| | Sample_submission_date | Sep 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 200 ng of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA of .cel files with Genespring 7.2
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,A,Hipp
| | Sample_contact_email | jenhipp@wfubmc.edu
| | Sample_contact_laboratory | Atala
| | Sample_contact_department | Institute for Regenerative Medicine
| | Sample_contact_institute | Wake Forest School of Medicine
| | Sample_contact_address | Medical Center Blvd
| | Sample_contact_city | Winston-Salem
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27157
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230289/suppl/GSM230289_20040701_01_CD49a-1_06-02-04.CEL.gz
| | Sample_relation | Reanalysis of: GSM91317
| | Sample_series_id | GSE9090
| | Sample_series_id | GSE9196
| | Sample_data_row_count | 54675
| | |
|
GSM230290 | GPL570 |
|
CD49a+ rep5 (stromal cell study)
|
normal prostate
|
CD49a+ MACS sorted cells
|
Prostate stromal fibromuscular cells
|
| Sample_geo_accession | GSM230290
| | Sample_status | Public on Nov 01 2007
| | Sample_submission_date | Sep 18 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Prostate tissue was MACS sorted for positive cells. Total RNA was extracted from the cell lysate using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 200 ng of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA of .cel files with Genespring 7.2
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennifer,A,Hipp
| | Sample_contact_email | jenhipp@wfubmc.edu
| | Sample_contact_laboratory | Atala
| | Sample_contact_department | Institute for Regenerative Medicine
| | Sample_contact_institute | Wake Forest School of Medicine
| | Sample_contact_address | Medical Center Blvd
| | Sample_contact_city | Winston-Salem
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27157
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230290/suppl/GSM230290_20040701_02_CD49a-4_06-02-04.CEL.gz
| | Sample_relation | Reanalysis of: GSM91318
| | Sample_series_id | GSE9090
| | Sample_series_id | GSE9196
| | Sample_data_row_count | 54675
| | |
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