Search results for the GEO ID: GSE9101  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM230349 | GPL570 |
|
control (unstimulated) cells, biological rep1
|
Human THP-1 macrophages, unstimulated
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230349
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230349/suppl/GSM230349.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230349/suppl/GSM230349.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
| | |
|
GSM230350 | GPL570 |
|
control (unstimulated) cells, biological rep2
|
Human THP-1 macrophages, unstimulated
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230350
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230350/suppl/GSM230350.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230350/suppl/GSM230350.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
| | |
|
GSM230351 | GPL570 |
|
control (unstimulated) cells, biological rep3
|
Human THP-1 macrophages, unstimulated
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230351
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230351/suppl/GSM230351.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230351/suppl/GSM230351.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
| | |
|
GSM230352 | GPL570 |
|
cells stimulated with lipoprotein prep 1, biological rep1
|
Human THP-1 macrophages, stimulated with lipoprotein prep1
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230352
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230352/suppl/GSM230352.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230352/suppl/GSM230352.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
| | |
|
GSM230353 | GPL570 |
|
cells stimulated with lipoprotein prep 1, biological rep2
|
Human THP-1 macrophages, stimulated with lipoprotein prep1
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230353
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230353/suppl/GSM230353.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230353/suppl/GSM230353.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
| | |
|
GSM230354 | GPL570 |
|
cells stimulated with lipoprotein prep 1, biological rep3
|
Human THP-1 macrophages, stimulated with lipoprotein prep1
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230354
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230354/suppl/GSM230354.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230354/suppl/GSM230354.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
| | |
|
GSM230355 | GPL570 |
|
cells stimulated with lipoprotein prep 2, biological rep1
|
Human THP-1 macrophages, stimulated with lipoprotein prep2
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230355
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230355/suppl/GSM230355.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230355/suppl/GSM230355.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
| | |
|
GSM230356 | GPL570 |
|
cells stimulated with lipoprotein prep 2, biological rep2
|
Human THP-1 macrophages, stimulated with lipoprotein prep2
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230356
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230356/suppl/GSM230356.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230356/suppl/GSM230356.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
| | |
|
GSM230357 | GPL570 |
|
cells stimulated with lipoprotein prep 2, biological rep3
|
Human THP-1 macrophages, stimulated with lipoprotein prep2
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230357
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230357/suppl/GSM230357.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230357/suppl/GSM230357.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
| | |
|
GSM230358 | GPL570 |
|
cells stimulated with lipoprotein prep 3, biological rep1
|
Human THP-1 macrophages, stimulated with lipoprotein prep3
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230358
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230358/suppl/GSM230358.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230358/suppl/GSM230358.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
| | |
|
GSM230359 | GPL570 |
|
cells stimulated with lipoprotein prep 3, biological rep2
|
Human THP-1 macrophages, stimulated with lipoprotein prep3
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230359
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230359/suppl/GSM230359.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230359/suppl/GSM230359.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
| | |
|
GSM230360 | GPL570 |
|
cells stimulated with lipoprotein prep 3, biological rep3
|
Human THP-1 macrophages, stimulated with lipoprotein prep3
|
Monocyte cell line, can be differentiated to macrophage, ATCC no. TIB-202
|
Gene expression data
|
| Sample_geo_accession | GSM230360
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Standard media was replaced with serum-free media containing 2% BSA, lipoproteins (in PBS) or the equivalent volume of PBS (controls) were added, incubaton was carried out for 24h, cells were then washed twice in PBS, scraped and stored at -80deg
| | Sample_growth_protocol_ch1 | Standard THP-1 cell media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | By Rneasy system (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA prepared as standard Affymetrix protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol EukGE-WS2v5_450
| | Sample_scan_protocol | Arrays were scanned using an Affymetrix GeneChip® Scanner 3000
| | Sample_data_processing | dChip (build April 15, 2005) was used for normalization and modeling using the PM-only model, Control rep1 as baseline array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Silvio,,Zaina
| | Sample_contact_department | Clinical Biochemistry
| | Sample_contact_institute | Rigshospitalet
| | Sample_contact_address | Blegdamsvej 9
| | Sample_contact_city | COPENHAGEN
| | Sample_contact_zip/postal_code | 2100
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230360/suppl/GSM230360.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230360/suppl/GSM230360.EXP.gz
| | Sample_series_id | GSE9101
| | Sample_data_row_count | 54675
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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