Search results for the GEO ID: GSE9118  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM230899 | GPL96 |
|
Melanocytes, no treatment
|
Primary culture from normal cells
|
Normal cells
|
Expression data with no treatment
|
| Sample_geo_accession | GSM230899
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230899/suppl/GSM230899.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230899/suppl/GSM230899.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230899/suppl/GSM230899.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230900 | GPL96 |
|
Melanocytes, 48h treatment with 5 AzadC
|
Primary culture from normal cells
|
Normal cells
|
Expression data after reversal of DNA methylation
|
| Sample_geo_accession | GSM230900
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230900/suppl/GSM230900.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230900/suppl/GSM230900.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230900/suppl/GSM230900.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230901 | GPL96 |
|
MelJuSo, no treatment
|
MelJuSo cell line
|
Melanoma cells
|
Expression data with no treatment
|
| Sample_geo_accession | GSM230901
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230901/suppl/GSM230901.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230901/suppl/GSM230901.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230901/suppl/GSM230901.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230902 | GPL96 |
|
MelJuSo, 48h treatment with 5 AzadC
|
MelJuSo cell line
|
Melanoma cells
|
Expression data after reversal of DNA methylation
|
| Sample_geo_accession | GSM230902
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230902/suppl/GSM230902.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230902/suppl/GSM230902.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230902/suppl/GSM230902.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230903 | GPL96 |
|
UACC903, no treatment
|
UACC903 cell line
|
Melanoma cells
|
Expression data with no treatment
|
| Sample_geo_accession | GSM230903
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230903/suppl/GSM230903.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230903/suppl/GSM230903.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230903/suppl/GSM230903.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230904 | GPL96 |
|
UACC903, 48h treatment with 5 AzadC
|
UACC903 cell line
|
Melanoma cells
|
Expression data after reversal of DNA methylation
|
| Sample_geo_accession | GSM230904
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230904/suppl/GSM230904.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230904/suppl/GSM230904.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230904/suppl/GSM230904.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230905 | GPL96 |
|
C8161, no treatment
|
C8161 cell line
|
Melanoma cells
|
Expression data with no treatment
|
| Sample_geo_accession | GSM230905
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230905/suppl/GSM230905.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230905/suppl/GSM230905.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230905/suppl/GSM230905.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230906 | GPL96 |
|
C8161, 48h treatment with 5 AzadC
|
C8161 cell line
|
Melanoma cells
|
Expression data after reversal of DNA methylation
|
| Sample_geo_accession | GSM230906
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230906/suppl/GSM230906.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230906/suppl/GSM230906.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230906/suppl/GSM230906.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230907 | GPL96 |
|
Neo6, no treatment
|
Neo6 cell line
|
Melanoma cells
|
Expression data with no treatment
|
| Sample_geo_accession | GSM230907
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230907/suppl/GSM230907.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230907/suppl/GSM230907.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230907/suppl/GSM230907.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230908 | GPL96 |
|
Neo6, 48h treatment with 5 AzadC
|
Neo6 cell line
|
Melanoma cells
|
Expression data after reversal of DNA methylation
|
| Sample_geo_accession | GSM230908
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230908/suppl/GSM230908.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230908/suppl/GSM230908.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230908/suppl/GSM230908.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230909 | GPL96 |
|
WM1205, no treatment
|
WM1205 cell line
|
Melanoma cells
|
Expression data with no treatment
|
| Sample_geo_accession | GSM230909
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230909/suppl/GSM230909.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230909/suppl/GSM230909.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230909/suppl/GSM230909.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230910 | GPL96 |
|
WM1205, 48h treatment with 5 AzadC
|
WM1205 cell line
|
Melanoma cells
|
Expression data after reversal of DNA methylation
|
| Sample_geo_accession | GSM230910
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230910/suppl/GSM230910.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230910/suppl/GSM230910.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230910/suppl/GSM230910.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230911 | GPL96 |
|
WM35, no treatment
|
WM35 cell line
|
Melanoma cells
|
Expression data with no treatment
|
| Sample_geo_accession | GSM230911
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230911/suppl/GSM230911.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230911/suppl/GSM230911.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230911/suppl/GSM230911.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
|
GSM230912 | GPL96 |
|
WM35, 48h treatment with 5 AzadC
|
WM35 cell line
|
Melanoma cells
|
Expression data after reversal of DNA methylation
|
| Sample_geo_accession | GSM230912
| | Sample_status | Public on Sep 21 2007
| | Sample_submission_date | Sep 20 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with 5uM 5AzadC for 48 hours
| | Sample_growth_protocol_ch1 | Cells were grown in suitable growth media (Cascade Biologics Medium 254 for melanocytes and DMEM F12 with 5% serum for all cell lines)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated using Qiagen Rneasy kit according to manufacturers' recommendations
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to Affymetrix instructions
| | Sample_hyb_protocol | Hybridizations were according to Affymetrix instructions
| | Sample_scan_protocol | The chips were scanned on a Hewlett Packard G2500A scanner
| | Sample_data_processing | Microarray Suite 5.0 (MAS 5.0; Affymetrix) software was used to analyze the HG-U133A arrays. All the arrays were normalized to a target signal intensity value of 500.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Viswanathan,,Muthusamy
| | Sample_contact_email | viswanathan.muthusamy@med.uvm.edu
| | Sample_contact_phone | 802 656 0914
| | Sample_contact_fax | 802 656 8892
| | Sample_contact_department | Pathology
| | Sample_contact_institute | University of Vermont
| | Sample_contact_address | 323A HSRF, 149 Beaumont Ave
| | Sample_contact_city | Burlington
| | Sample_contact_state | VT
| | Sample_contact_zip/postal_code | 05405
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230912/suppl/GSM230912.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230912/suppl/GSM230912.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM230nnn/GSM230912/suppl/GSM230912.EXP.gz
| | Sample_series_id | GSE9118
| | Sample_data_row_count | 22283
| | |
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