Search results for the GEO ID: GSE9128  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM231005 | GPL96 |
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Control pool 3 (n=5)
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Healthy donors
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Age (mean +- SE)
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Gene expression data from controls
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| Sample_geo_accession | GSM231005
| | Sample_status | Public on Sep 22 2007
| | Sample_submission_date | Sep 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 11 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip U133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with was performed by using customized R language-based script using the Bioconductor packages for quality control analysis, data normalization, hierarchical clusters and identification of differentially expressed transcripts.
| | Sample_platform_id | GPL96
| | Sample_contact_name | diego,,arcelli
| | Sample_contact_email | diego.arcelli@gmail.com
| | Sample_contact_laboratory | Laboratory of Immunology
| | Sample_contact_institute | Regina Elena National Cancer Institute
| | Sample_contact_address | Via delle Messi d'Oro 156
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00158
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM231nnn/GSM231005/suppl/GSM231005.CEL.gz
| | Sample_series_id | GSE9128
| | Sample_data_row_count | 22185
| | |
|
GSM231008 | GPL96 |
|
NICM pool 3 (n=4)
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CHF NYHA III-IV pts
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Age (mean +- SE)
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Gene expression data from NICM NYHA III-IV CHF patients
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| Sample_geo_accession | GSM231008
| | Sample_status | Public on Sep 22 2007
| | Sample_submission_date | Sep 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 11 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip U133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with was performed by using customized R language-based script using the Bioconductor packages for quality control analysis, data normalization, hierarchical clusters and identification of differentially expressed transcripts.
| | Sample_platform_id | GPL96
| | Sample_contact_name | diego,,arcelli
| | Sample_contact_email | diego.arcelli@gmail.com
| | Sample_contact_laboratory | Laboratory of Immunology
| | Sample_contact_institute | Regina Elena National Cancer Institute
| | Sample_contact_address | Via delle Messi d'Oro 156
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00158
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM231nnn/GSM231008/suppl/GSM231008.CEL.gz
| | Sample_series_id | GSE9128
| | Sample_data_row_count | 22185
| | |
|
GSM231009 | GPL96 |
|
NICM pool 4 (n=4)
|
CHF NYHA III-IV pts
|
Age (mean +- SE)
|
Gene expression data from NICM NYHA III-IV CHF patients
|
| Sample_geo_accession | GSM231009
| | Sample_status | Public on Sep 22 2007
| | Sample_submission_date | Sep 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 11 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip U133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with was performed by using customized R language-based script using the Bioconductor packages for quality control analysis, data normalization, hierarchical clusters and identification of differentially expressed transcripts.
| | Sample_platform_id | GPL96
| | Sample_contact_name | diego,,arcelli
| | Sample_contact_email | diego.arcelli@gmail.com
| | Sample_contact_laboratory | Laboratory of Immunology
| | Sample_contact_institute | Regina Elena National Cancer Institute
| | Sample_contact_address | Via delle Messi d'Oro 156
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00158
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM231nnn/GSM231009/suppl/GSM231009.CEL.gz
| | Sample_series_id | GSE9128
| | Sample_data_row_count | 22185
| | |
|
GSM231010 | GPL96 |
|
ICM pool 1 (n=2)
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CHF NYHA III-IV pts
|
Age (mean +- SE)
|
Gene expression data from ICM NYHA III-IV CHF patients
|
| Sample_geo_accession | GSM231010
| | Sample_status | Public on Sep 22 2007
| | Sample_submission_date | Sep 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 11 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip U133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with was performed by using customized R language-based script using the Bioconductor packages for quality control analysis, data normalization, hierarchical clusters and identification of differentially expressed transcripts.
| | Sample_platform_id | GPL96
| | Sample_contact_name | diego,,arcelli
| | Sample_contact_email | diego.arcelli@gmail.com
| | Sample_contact_laboratory | Laboratory of Immunology
| | Sample_contact_institute | Regina Elena National Cancer Institute
| | Sample_contact_address | Via delle Messi d'Oro 156
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00158
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM231nnn/GSM231010/suppl/GSM231010.CEL.gz
| | Sample_series_id | GSE9128
| | Sample_data_row_count | 22185
| | |
|
GSM231011 | GPL96 |
|
ICM pool 2 (n=2)
|
CHF NYHA III-IV pts
|
Age (mean +- SE)
|
Gene expression data from ICM NYHA III-IV CHF patients
|
| Sample_geo_accession | GSM231011
| | Sample_status | Public on Sep 22 2007
| | Sample_submission_date | Sep 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 11 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip U133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with was performed by using customized R language-based script using the Bioconductor packages for quality control analysis, data normalization, hierarchical clusters and identification of differentially expressed transcripts.
| | Sample_platform_id | GPL96
| | Sample_contact_name | diego,,arcelli
| | Sample_contact_email | diego.arcelli@gmail.com
| | Sample_contact_laboratory | Laboratory of Immunology
| | Sample_contact_institute | Regina Elena National Cancer Institute
| | Sample_contact_address | Via delle Messi d'Oro 156
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00158
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM231nnn/GSM231011/suppl/GSM231011.CEL.gz
| | Sample_series_id | GSE9128
| | Sample_data_row_count | 22185
| | |
|
GSM231012 | GPL96 |
|
ICM pool 3 (n=4)
|
CHF NYHA III-IV pts
|
Age (mean +- SE)
|
Gene expression data from ICM NYHA III-IV CHF patients
|
| Sample_geo_accession | GSM231012
| | Sample_status | Public on Sep 22 2007
| | Sample_submission_date | Sep 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 11 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip U133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with was performed by using customized R language-based script using the Bioconductor packages for quality control analysis, data normalization, hierarchical clusters and identification of differentially expressed transcripts.
| | Sample_platform_id | GPL96
| | Sample_contact_name | diego,,arcelli
| | Sample_contact_email | diego.arcelli@gmail.com
| | Sample_contact_laboratory | Laboratory of Immunology
| | Sample_contact_institute | Regina Elena National Cancer Institute
| | Sample_contact_address | Via delle Messi d'Oro 156
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00158
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM231nnn/GSM231012/suppl/GSM231012.CEL.gz
| | Sample_series_id | GSE9128
| | Sample_data_row_count | 22185
| | |
|
GSM231013 | GPL96 |
|
ICM pool 4 (n=4)
|
CHF NYHA III-IV pts
|
Age (mean +- SE)
|
Gene expression data from ICM NYHA III-IV CHF patients
|
| Sample_geo_accession | GSM231013
| | Sample_status | Public on Sep 22 2007
| | Sample_submission_date | Sep 21 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 11 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human GeneChip U133A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with was performed by using customized R language-based script using the Bioconductor packages for quality control analysis, data normalization, hierarchical clusters and identification of differentially expressed transcripts.
| | Sample_platform_id | GPL96
| | Sample_contact_name | diego,,arcelli
| | Sample_contact_email | diego.arcelli@gmail.com
| | Sample_contact_laboratory | Laboratory of Immunology
| | Sample_contact_institute | Regina Elena National Cancer Institute
| | Sample_contact_address | Via delle Messi d'Oro 156
| | Sample_contact_city | Rome
| | Sample_contact_zip/postal_code | 00158
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM231nnn/GSM231013/suppl/GSM231013.CEL.gz
| | Sample_series_id | GSE9128
| | Sample_data_row_count | 22185
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