Search results for the GEO ID: GSE9212  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM233040 | GPL570 |
|
Control_rep1
|
Empty vector control
|
puromycin-selected
|
Gene expression data from cell-lines not transfected with any transcription factor.
|
| Sample_geo_accession | GSM233040
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233040/suppl/GSM233040.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233040/suppl/GSM233040.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233041 | GPL570 |
|
PAX9_rep1
|
Transfectant cells overexpressing PAX9
|
puromycin-selected
|
Gene expression data from cell-lines transfected by PAX9.
|
| Sample_geo_accession | GSM233041
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233041/suppl/GSM233041.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233041/suppl/GSM233041.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233042 | GPL570 |
|
TTF1_rep1
|
Transfectant cells overexpressing TTF1
|
puromycin-selected
|
Gene expression data from cell-lines transfected by TTF1.
|
| Sample_geo_accession | GSM233042
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233042/suppl/GSM233042.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233042/suppl/GSM233042.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233043 | GPL570 |
|
NKX2-8_rep1
|
Transfectant cells overexpressing NKX2-8
|
puromycin-selected
|
Gene expression data from cell-lines transfected by NKX2-8.
|
| Sample_geo_accession | GSM233043
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233043/suppl/GSM233043.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233043/suppl/GSM233043.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233044 | GPL570 |
|
Control_rep2
|
Empty vector control
|
puromycin-selected
|
Gene expression data from cell-lines not transfected with any transcription factor.
|
| Sample_geo_accession | GSM233044
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233044/suppl/GSM233044.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233044/suppl/GSM233044.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233045 | GPL570 |
|
PAX9_rep2
|
Transfectant cells overexpressing PAX9
|
puromycin-selected
|
Gene expression data from cell-lines transfected by PAX9.
|
| Sample_geo_accession | GSM233045
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233045/suppl/GSM233045.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233045/suppl/GSM233045.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233046 | GPL570 |
|
TTF1_rep2
|
Transfectant cells overexpressing TTF1
|
puromycin-selected
|
Gene expression data from cell-lines transfected by TTF1.
|
| Sample_geo_accession | GSM233046
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233046/suppl/GSM233046.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233046/suppl/GSM233046.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233047 | GPL570 |
|
NKX2-8_rep2
|
Transfectant cells overexpressing NKX2-8
|
puromycin-selected
|
Gene expression data from cell-lines transfected by NKX2-8.
|
| Sample_geo_accession | GSM233047
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233047/suppl/GSM233047.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233047/suppl/GSM233047.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233048 | GPL570 |
|
Control_rep3
|
Empty vector control
|
puromycin-selected
|
Gene expression data from cell-lines not transfected with any transcription factor.
|
| Sample_geo_accession | GSM233048
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233048/suppl/GSM233048.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233048/suppl/GSM233048.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233049 | GPL570 |
|
PAX9_rep3
|
Transfectant cells overexpressing PAX9
|
puromycin-selected
|
Gene expression data from cell-lines transfected by PAX9.
|
| Sample_geo_accession | GSM233049
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233049/suppl/GSM233049.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233049/suppl/GSM233049.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233050 | GPL570 |
|
TTF1_rep3
|
Transfectant cells overexpressing TTF1
|
puromycin-selected
|
Gene expression data from cell-lines transfected by TTF1.
|
| Sample_geo_accession | GSM233050
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233050/suppl/GSM233050.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233050/suppl/GSM233050.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233051 | GPL570 |
|
NKX2-8_rep3
|
Transfectant cells overexpressing NKX2-8
|
puromycin-selected
|
Gene expression data from cell-lines transfected by NKX2-8.
|
| Sample_geo_accession | GSM233051
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233051/suppl/GSM233051.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233051/suppl/GSM233051.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233052 | GPL570 |
|
Control_rep4
|
Empty vector control
|
Blasticidin-selected
|
Gene expression data from cell-lines not transfected with any transcription factor.
|
| Sample_geo_accession | GSM233052
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233052/suppl/GSM233052.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233052/suppl/GSM233052.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233053 | GPL570 |
|
PAX9_rep4
|
Transfectant cells overexpressing PAX9
|
Blasticidin-selected
|
Gene expression data from cell-lines transfected by PAX9.
|
| Sample_geo_accession | GSM233053
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233053/suppl/GSM233053.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233053/suppl/GSM233053.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233054 | GPL570 |
|
TTF1_rep4
|
Transfectant cells overexpressing TTF1
|
Blasticidin-selected
|
Gene expression data from cell-lines transfected by TTF1.
|
| Sample_geo_accession | GSM233054
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233054/suppl/GSM233054.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233054/suppl/GSM233054.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233055 | GPL570 |
|
NKX2-8_rep4
|
Transfectant cells overexpressing NKX2-8
|
Blasticidin-selected
|
Gene expression data from cell-lines transfected by NKX2-8.
|
| Sample_geo_accession | GSM233055
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233055/suppl/GSM233055.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233055/suppl/GSM233055.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233056 | GPL570 |
|
Control_rep5
|
Empty vector control
|
Blasticidin-selected
|
Gene expression data from cell-lines not transfected with any transcription factor.
|
| Sample_geo_accession | GSM233056
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233056/suppl/GSM233056.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233056/suppl/GSM233056.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233057 | GPL570 |
|
PAX9_rep5
|
Transfectant cells overexpressing PAX9
|
Blasticidin-selected
|
Gene expression data from cell-lines transfected by PAX9.
|
| Sample_geo_accession | GSM233057
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233057/suppl/GSM233057.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233057/suppl/GSM233057.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233058 | GPL570 |
|
TTF1_rep5
|
Transfectant cells overexpressing TTF1
|
Blasticidin-selected
|
Gene expression data from cell-lines transfected by TTF1.
|
| Sample_geo_accession | GSM233058
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233058/suppl/GSM233058.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233058/suppl/GSM233058.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233059 | GPL570 |
|
NKX2-8_rep5
|
Transfectant cells overexpressing NKX2-8
|
Blasticidin-selected
|
Gene expression data from cell-lines transfected by NKX2-8.
|
| Sample_geo_accession | GSM233059
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233059/suppl/GSM233059.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233059/suppl/GSM233059.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233060 | GPL570 |
|
Control_rep6
|
Empty vector control
|
Hygromycin-selected
|
Gene expression data from cell-lines not transfected with any transcription factor.
|
| Sample_geo_accession | GSM233060
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233060/suppl/GSM233060.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233060/suppl/GSM233060.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233061 | GPL570 |
|
PAX9_rep6
|
Transfectant cells overexpressing PAX9
|
Hygromycin-selected
|
Gene expression data from cell-lines transfected by PAX9.
|
| Sample_geo_accession | GSM233061
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233061/suppl/GSM233061.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233061/suppl/GSM233061.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233062 | GPL570 |
|
TTF1_rep6
|
Transfectant cells overexpressing TTF1
|
Hygromycin-selected
|
Gene expression data from cell-lines transfected by TTF1.
|
| Sample_geo_accession | GSM233062
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233062/suppl/GSM233062.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233062/suppl/GSM233062.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
GSM233063 | GPL570 |
|
NKX2-8_rep6
|
Transfectant cells overexpressing NKX2-8
|
Hygromycin-selected
|
Gene expression data from cell-lines transfected by NKX2-8.
|
| Sample_geo_accession | GSM233063
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 02 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from stable transfectant cells over-expressing individual transcription factors was extracted using the QiaShredder and Qiagen RNeasy Mini kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The resulting biotin-labeled RNA samples were then hybridized with Affymetrix U133 Plus 2.0 GeneChip arrays according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed using Stratagene's ArrayAssist Enterprise using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Chaitanya,Ramanuj,Acharya
| | Sample_contact_email | c.acharya@duke.edu
| | Sample_contact_laboratory | Potti Lab
| | Sample_contact_department | IGSP
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 101 Science Dr, Rm#2211
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27705
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233063/suppl/GSM233063.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM233nnn/GSM233063/suppl/GSM233063.CHP.gz
| | Sample_series_id | GSE9212
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
