Search results for the GEO ID: GSE9263  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM234943 | GPL1355 |
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NOR-F1
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Rat left ventricle non-infarction area
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NOR-F1:sham operated rats, number F1
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NOR-F1:sham operated rats, number F1
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| Sample_geo_accession | GSM234943
| | Sample_status | Public on Oct 18 2007
| | Sample_submission_date | Oct 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was extracted from non-infarcted region of left ventricle by trizol reagent (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | After reverse transcription, an in vitro transcription (IVT) reaction was then done to produce biotin-labeled cRNA from the cDNA.
| | Sample_hyb_protocol | The cRNA was fragmented and hybridized to the chips
| | Sample_scan_protocol | probe arrays were scanned under the control of Affymetrix GeneChip 5.0 software.
| | Sample_data_processing | Data sets on each GeneChip were normalized by scaling total chip fluorescence intensities to a common value of 500 before comparison via GCOS1.3 software (Affymetrix). Selected and clustered candidate genes had to be present on all of the three chips in vehicle, rhNRG-1 treated or sham operated groups, with at least a 1.5-fold change in expression level compared with any another groups as implemented in GeneSpring 7.31(Agilent). 1-Way ANOVA Tukey analysis was done at the same time, all of the clustered genes were p-value <0.05
| | Sample_platform_id | GPL1355
| | Sample_contact_name | zensun,,biology
| | Sample_contact_email | sun-xbin@163.com
| | Sample_contact_institute | zensun biology
| | Sample_contact_address | shanghai zhangjiang
| | Sample_contact_city | shanghai
| | Sample_contact_zip/postal_code | 200023
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM234nnn/GSM234943/suppl/GSM234943.CEL.gz
| | Sample_series_id | GSE9263
| | Sample_data_row_count | 31042
| | |
|
GSM234944 | GPL1355 |
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NOR-F4
|
Rat left ventricle non-infarction area
|
NOR-F4:sham operated rats,number F4
|
NOR-F4:sham operated rats,number F4
|
| Sample_geo_accession | GSM234944
| | Sample_status | Public on Oct 18 2007
| | Sample_submission_date | Oct 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was extracted from non-infarcted region of left ventricle by trizol reagent (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | After reverse transcription, an in vitro transcription (IVT) reaction was then done to produce biotin-labeled cRNA from the cDNA.
| | Sample_hyb_protocol | The cRNA was fragmented and hybridized to the chips
| | Sample_scan_protocol | probe arrays were scanned under the control of Affymetrix GeneChip 5.0 software.
| | Sample_data_processing | Data sets on each GeneChip were normalized by scaling total chip fluorescence intensities to a common value of 500 before comparison via GCOS1.3 software (Affymetrix). Selected and clustered candidate genes had to be present on all of the three chips in vehicle, rhNRG-1 treated or sham operated groups, with at least a 1.5-fold change in expression level compared with any another groups as implemented in GeneSpring 7.31(Agilent). 1-Way ANOVA Tukey analysis was done at the same time, all of the clustered genes were p-value <0.05
| | Sample_platform_id | GPL1355
| | Sample_contact_name | zensun,,biology
| | Sample_contact_email | sun-xbin@163.com
| | Sample_contact_institute | zensun biology
| | Sample_contact_address | shanghai zhangjiang
| | Sample_contact_city | shanghai
| | Sample_contact_zip/postal_code | 200023
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM234nnn/GSM234944/suppl/GSM234944.CEL.gz
| | Sample_series_id | GSE9263
| | Sample_data_row_count | 31042
| | |
|
GSM234945 | GPL1355 |
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NOR-F8
|
Rat left ventricle non-infarction area
|
NOR-F8:sham operated rats, number F8
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NOR-F8:sham operated rats, number F8
|
| Sample_geo_accession | GSM234945
| | Sample_status | Public on Oct 18 2007
| | Sample_submission_date | Oct 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was extracted from non-infarcted region of left ventricle by trizol reagent (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | After reverse transcription, an in vitro transcription (IVT) reaction was then done to produce biotin-labeled cRNA from the cDNA.
| | Sample_hyb_protocol | The cRNA was fragmented and hybridized to the chips
| | Sample_scan_protocol | probe arrays were scanned under the control of Affymetrix GeneChip 5.0 software.
| | Sample_data_processing | Data sets on each GeneChip were normalized by scaling total chip fluorescence intensities to a common value of 500 before comparison via GCOS1.3 software (Affymetrix). Selected and clustered candidate genes had to be present on all of the three chips in vehicle, rhNRG-1 treated or sham operated groups, with at least a 1.5-fold change in expression level compared with any another groups as implemented in GeneSpring 7.31(Agilent). 1-Way ANOVA Tukey analysis was done at the same time, all of the clustered genes were p-value <0.05
| | Sample_platform_id | GPL1355
| | Sample_contact_name | zensun,,biology
| | Sample_contact_email | sun-xbin@163.com
| | Sample_contact_institute | zensun biology
| | Sample_contact_address | shanghai zhangjiang
| | Sample_contact_city | shanghai
| | Sample_contact_zip/postal_code | 200023
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM234nnn/GSM234945/suppl/GSM234945.CEL.gz
| | Sample_series_id | GSE9263
| | Sample_data_row_count | 31042
| | |
|
GSM234946 | GPL1355 |
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HFP-F1
|
Rat left ventricle non-infarction area
|
HFP-F1:vehicle rat, number F1
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HFP-F1:vehicle rat, number F1
|
| Sample_geo_accession | GSM234946
| | Sample_status | Public on Oct 18 2007
| | Sample_submission_date | Oct 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was extracted from non-infarcted region of left ventricle by trizol reagent (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | After reverse transcription, an in vitro transcription (IVT) reaction was then done to produce biotin-labeled cRNA from the cDNA.
| | Sample_hyb_protocol | The cRNA was fragmented and hybridized to the chips
| | Sample_scan_protocol | probe arrays were scanned under the control of Affymetrix GeneChip 5.0 software.
| | Sample_data_processing | Data sets on each GeneChip were normalized by scaling total chip fluorescence intensities to a common value of 500 before comparison via GCOS1.3 software (Affymetrix). Selected and clustered candidate genes had to be present on all of the three chips in vehicle, rhNRG-1 treated or sham operated groups, with at least a 1.5-fold change in expression level compared with any another groups as implemented in GeneSpring 7.31(Agilent). 1-Way ANOVA Tukey analysis was done at the same time, all of the clustered genes were p-value <0.05
| | Sample_platform_id | GPL1355
| | Sample_contact_name | zensun,,biology
| | Sample_contact_email | sun-xbin@163.com
| | Sample_contact_institute | zensun biology
| | Sample_contact_address | shanghai zhangjiang
| | Sample_contact_city | shanghai
| | Sample_contact_zip/postal_code | 200023
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM234nnn/GSM234946/suppl/GSM234946.CEL.gz
| | Sample_series_id | GSE9263
| | Sample_data_row_count | 31042
| | |
|
GSM234947 | GPL1355 |
|
HFP-F2
|
Rat left ventricle non-infarction area
|
HFP-F2:vehicle rat, number F2
|
HFP-F2:vehicle rat, number F2
|
| Sample_geo_accession | GSM234947
| | Sample_status | Public on Oct 18 2007
| | Sample_submission_date | Oct 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was extracted from non-infarcted region of left ventricle by trizol reagent (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | After reverse transcription, an in vitro transcription (IVT) reaction was then done to produce biotin-labeled cRNA from the cDNA.
| | Sample_hyb_protocol | The cRNA was fragmented and hybridized to the chips
| | Sample_scan_protocol | probe arrays were scanned under the control of Affymetrix GeneChip 5.0 software.
| | Sample_data_processing | Data sets on each GeneChip were normalized by scaling total chip fluorescence intensities to a common value of 500 before comparison via GCOS1.3 software (Affymetrix). Selected and clustered candidate genes had to be present on all of the three chips in vehicle, rhNRG-1 treated or sham operated groups, with at least a 1.5-fold change in expression level compared with any another groups as implemented in GeneSpring 7.31(Agilent). 1-Way ANOVA Tukey analysis was done at the same time, all of the clustered genes were p-value <0.05
| | Sample_platform_id | GPL1355
| | Sample_contact_name | zensun,,biology
| | Sample_contact_email | sun-xbin@163.com
| | Sample_contact_institute | zensun biology
| | Sample_contact_address | shanghai zhangjiang
| | Sample_contact_city | shanghai
| | Sample_contact_zip/postal_code | 200023
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM234nnn/GSM234947/suppl/GSM234947.CEL.gz
| | Sample_series_id | GSE9263
| | Sample_data_row_count | 31042
| | |
|
GSM234948 | GPL1355 |
|
HFP-F4
|
Rat left ventricle non-infarction area
|
HFP-F4:vehicle rat, number F4
|
HFP-F4:vehicle rat, number F4
|
| Sample_geo_accession | GSM234948
| | Sample_status | Public on Oct 18 2007
| | Sample_submission_date | Oct 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was extracted from non-infarcted region of left ventricle by trizol reagent (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | After reverse transcription, an in vitro transcription (IVT) reaction was then done to produce biotin-labeled cRNA from the cDNA.
| | Sample_hyb_protocol | The cRNA was fragmented and hybridized to the chips
| | Sample_scan_protocol | probe arrays were scanned under the control of Affymetrix GeneChip 5.0 software.
| | Sample_data_processing | Data sets on each GeneChip were normalized by scaling total chip fluorescence intensities to a common value of 500 before comparison via GCOS1.3 software (Affymetrix). Selected and clustered candidate genes had to be present on all of the three chips in vehicle, rhNRG-1 treated or sham operated groups, with at least a 1.5-fold change in expression level compared with any another groups as implemented in GeneSpring 7.31(Agilent). 1-Way ANOVA Tukey analysis was done at the same time, all of the clustered genes were p-value <0.05
| | Sample_platform_id | GPL1355
| | Sample_contact_name | zensun,,biology
| | Sample_contact_email | sun-xbin@163.com
| | Sample_contact_institute | zensun biology
| | Sample_contact_address | shanghai zhangjiang
| | Sample_contact_city | shanghai
| | Sample_contact_zip/postal_code | 200023
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM234nnn/GSM234948/suppl/GSM234948.CEL.gz
| | Sample_series_id | GSE9263
| | Sample_data_row_count | 31042
| | |
|
GSM234949 | GPL1355 |
|
HFP-N2
|
Rat left ventricle non-infarction area
|
HFP-N2:vehicle rat teated with rhNRG-1(recombinant human neuregulin-1), number 2
|
HFP-N2:vehicle rat teated with rhNRG-1(recombinant human neuregulin-1), number 2
|
| Sample_geo_accession | GSM234949
| | Sample_status | Public on Oct 18 2007
| | Sample_submission_date | Oct 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was extracted from non-infarcted region of left ventricle by trizol reagent (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | After reverse transcription, an in vitro transcription (IVT) reaction was then done to produce biotin-labeled cRNA from the cDNA.
| | Sample_hyb_protocol | The cRNA was fragmented and hybridized to the chips
| | Sample_scan_protocol | probe arrays were scanned under the control of Affymetrix GeneChip 5.0 software.
| | Sample_data_processing | Data sets on each GeneChip were normalized by scaling total chip fluorescence intensities to a common value of 500 before comparison via GCOS1.3 software (Affymetrix). Selected and clustered candidate genes had to be present on all of the three chips in vehicle, rhNRG-1 treated or sham operated groups, with at least a 1.5-fold change in expression level compared with any another groups as implemented in GeneSpring 7.31(Agilent). 1-Way ANOVA Tukey analysis was done at the same time, all of the clustered genes were p-value <0.05
| | Sample_platform_id | GPL1355
| | Sample_contact_name | zensun,,biology
| | Sample_contact_email | sun-xbin@163.com
| | Sample_contact_institute | zensun biology
| | Sample_contact_address | shanghai zhangjiang
| | Sample_contact_city | shanghai
| | Sample_contact_zip/postal_code | 200023
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM234nnn/GSM234949/suppl/GSM234949.CEL.gz
| | Sample_series_id | GSE9263
| | Sample_data_row_count | 31042
| | |
|
GSM234950 | GPL1355 |
|
HFP-N3
|
Rat left ventricle non-infarction area
|
HFP-N3:vehicle rat teated with rhNRG-1(recombinant human neuregulin-1), number 3
|
HFP-N3:vehicle rat teated with rhNRG-1(recombinant human neuregulin-1), number 3
|
| Sample_geo_accession | GSM234950
| | Sample_status | Public on Oct 18 2007
| | Sample_submission_date | Oct 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was extracted from non-infarcted region of left ventricle by trizol reagent (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | After reverse transcription, an in vitro transcription (IVT) reaction was then done to produce biotin-labeled cRNA from the cDNA.
| | Sample_hyb_protocol | The cRNA was fragmented and hybridized to the chips
| | Sample_scan_protocol | probe arrays were scanned under the control of Affymetrix GeneChip 5.0 software.
| | Sample_data_processing | Data sets on each GeneChip were normalized by scaling total chip fluorescence intensities to a common value of 500 before comparison via GCOS1.3 software (Affymetrix). Selected and clustered candidate genes had to be present on all of the three chips in vehicle, rhNRG-1 treated or sham operated groups, with at least a 1.5-fold change in expression level compared with any another groups as implemented in GeneSpring 7.31(Agilent). 1-Way ANOVA Tukey analysis was done at the same time, all of the clustered genes were p-value <0.05
| | Sample_platform_id | GPL1355
| | Sample_contact_name | zensun,,biology
| | Sample_contact_email | sun-xbin@163.com
| | Sample_contact_institute | zensun biology
| | Sample_contact_address | shanghai zhangjiang
| | Sample_contact_city | shanghai
| | Sample_contact_zip/postal_code | 200023
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM234nnn/GSM234950/suppl/GSM234950.CEL.gz
| | Sample_series_id | GSE9263
| | Sample_data_row_count | 31042
| | |
|
GSM234951 | GPL1355 |
|
HFP-N4
|
Rat left ventricle non-infarction area
|
HFP-N4:vehicle rat teated with rhNRG-1(recombinant human neuregulin-1), number 4
|
HFP-N4:vehicle rat teated with rhNRG-1(recombinant human neuregulin-1), number 4
|
| Sample_geo_accession | GSM234951
| | Sample_status | Public on Oct 18 2007
| | Sample_submission_date | Oct 08 2007
| | Sample_last_update_date | Aug 14 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was extracted from non-infarcted region of left ventricle by trizol reagent (Invitrogen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | After reverse transcription, an in vitro transcription (IVT) reaction was then done to produce biotin-labeled cRNA from the cDNA.
| | Sample_hyb_protocol | The cRNA was fragmented and hybridized to the chips
| | Sample_scan_protocol | probe arrays were scanned under the control of Affymetrix GeneChip 5.0 software.
| | Sample_data_processing | Data sets on each GeneChip were normalized by scaling total chip fluorescence intensities to a common value of 500 before comparison via GCOS1.3 software (Affymetrix). Selected and clustered candidate genes had to be present on all of the three chips in vehicle, rhNRG-1 treated or sham operated groups, with at least a 1.5-fold change in expression level compared with any another groups as implemented in GeneSpring 7.31(Agilent). 1-Way ANOVA Tukey analysis was done at the same time, all of the clustered genes were p-value <0.05
| | Sample_platform_id | GPL1355
| | Sample_contact_name | zensun,,biology
| | Sample_contact_email | sun-xbin@163.com
| | Sample_contact_institute | zensun biology
| | Sample_contact_address | shanghai zhangjiang
| | Sample_contact_city | shanghai
| | Sample_contact_zip/postal_code | 200023
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM234nnn/GSM234951/suppl/GSM234951.CEL.gz
| | Sample_series_id | GSE9263
| | Sample_data_row_count | 31042
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